Rh2CG034900

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002685
Physical Location & Seq
Forward (+)
2683395 .. 2684298
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG034900.1

Sequence Viewer

Length: 498 bp
ATGGATAGCCGTGTGGCTTTGATGAGCTTCGTGATGGTGGCTTTGCTAATGAAGGGTGCAGCTGCTGGAATTCACACAGTCAATTGGACTGTCCCCTCCAATAAGTCAGCTTACACCACTTGGGCTAACACGAGCACTTTCTATCTCAACGACCAACTGCAATTCGGGTGGAGTGGGACGCACAATGTGGCGAATGCAACCAAGGATGAATATGATAACTGCTTAAAGACTGCCAAGGTACTAACAAGTACCTCGCTCGATCTCATCGATCTTAATACTTCTGGTCCTCTCTACTTCATATGCACCATAGACGATCACTGTGAAAGTGGCCAGAAGCTGGCTATCAACGTTACGTACCAACGTTATCGGTCCCACGTTAACTACTCCACCGCCGCCACCAAGCTCAGCTTCAGCTCTGGCTGTTGGGACTTTATTTGCAATCGTGAGCTCCATCATAGTCACATCCTTTATTTATCGTTTCATACTATACCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

165

Amino Acids

18.48

Weight (kDa)

6.68

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 29 - 111 2.4e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AciI CCGC 2 cut(s) 390, 393
AclI AACGTT 2 cut(s) 348, 361
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 394
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 3 cut(s) 240, 250, 356
AfiI CCNNNNNNNGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 8 cut(s) 27, 62, 110, 337, 403, 408, 414, 448
AluI AGCT 8 cut(s) 27, 62, 110, 337, 403, 408, 414, 448
Alw21I GWGCWC 2 cut(s) 137, 450
AlwNI CAGNNNCTG 2 cut(s) 65, 337
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 59, 62
ApoI RAATTY 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 284, 369
AvaII GGWCC 2 cut(s) 284, 369
BalI TGGCCA 1 cut(s) 330
BanII GRGCYC 1 cut(s) 450
BauI CACGAG 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 137, 450
BbvI GCAGC 2 cut(s) 49, 71
BccI CCATC 2 cut(s) 28, 459
BisI GCNGC 3 cut(s) 60, 63, 393
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 3 cut(s) 61, 64, 394
Bme18I GGWCC 2 cut(s) 284, 369
BmgT120I GGNCC 2 cut(s) 284, 369
BmiI GGNNCC 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 201, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 337
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 201, 234
BseGI GGATG 2 cut(s) 211, 462
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 418
BseXI GCAGC 2 cut(s) 49, 71
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 267
BsiHKAI GWGCWC 2 cut(s) 137, 450
BslFI GGGAC 4 cut(s) 77, 190, 355, 440
BslI CCNNNNNNNGG 1 cut(s) 337
BsmFI GGGAC 4 cut(s) 77, 190, 355, 440
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 137, 450
Bsp143I GATC 3 cut(s) 259, 268, 313
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 2 cut(s) 390, 393
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 417
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 201, 234
BssMI GATC 3 cut(s) 259, 268, 313
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 2 cut(s) 201, 234
Bst2BI CACGAG 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 79, 91, 320
BstBAI YACGTR 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 211, 462
BstKTI GATC 3 cut(s) 262, 271, 316
BstMBI GATC 3 cut(s) 259, 268, 313
BstSNI TACGTA 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 49, 71
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 1 cut(s) 330
BsuTUI ATCGAT 1 cut(s) 267
BtsCI GGATG 2 cut(s) 211, 462
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 2 cut(s) 65, 337
Cfr13I GGNCC 2 cut(s) 284, 369
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 239, 249, 355
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviQI GTAC 3 cut(s) 239, 249, 355
DdeI CTNAG 1 cut(s) 404
DpnI GATC 3 cut(s) 261, 270, 315
DpnII GATC 3 cut(s) 259, 268, 313
DraIII CACNNNGTG 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 328
Ecl136II GAGCTC 1 cut(s) 448
Eco105I TACGTA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 201, 234
Eco24I GRGCYC 1 cut(s) 450
Eco47I GGWCC 2 cut(s) 284, 369
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 69
EcoT14I CCWWGG 2 cut(s) 201, 234
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 201, 234
FaiI YATR 7 cut(s) 213, 299, 301, 308, 456, 483, 488
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 4 cut(s) 77, 190, 355, 440
FauNDI CATATG 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 60, 63, 393
FokI GGATG 2 cut(s) 218, 449
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 3 cut(s) 60, 63, 393
GluI GCNGC 3 cut(s) 60, 63, 393
HaeIII GGCC 1 cut(s) 330
HgaI GACGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HpaI GTTAAC 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 379
Hpy188III TCNNGA 2 cut(s) 31, 443
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 3 cut(s) 79, 91, 320
HpyCH4IV ACGT 4 cut(s) 348, 353, 361, 375
HpyCH4V TGCA 5 cut(s) 59, 160, 197, 303, 438
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 4 cut(s) 348, 353, 361, 375
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 259, 268, 313
LmnI GCTCC 1 cut(s) 453
LpnPI CCDG 5 cut(s) 51, 267, 323, 344, 402
Lsp1109I GCAGC 2 cut(s) 49, 71
MaeII ACGT 4 cut(s) 348, 353, 361, 375
MaeIII GTNAC 2 cut(s) 349, 458
MalI GATC 3 cut(s) 261, 270, 315
MboI GATC 3 cut(s) 259, 268, 313
MfeI CAATTG 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 137, 450
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 4 cut(s) 69, 82, 161, 493
MluNI TGGCCA 1 cut(s) 330
MnlI CCTC 3 cut(s) 106, 262, 297
Mox20I TGGCCA 1 cut(s) 330
MscI TGGCCA 1 cut(s) 330
MseI TTAA 3 cut(s) 224, 273, 378
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 62
MunI CAATTG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 199
NdeI CATATG 1 cut(s) 299
NdeII GATC 3 cut(s) 259, 268, 313
NlaIV GGNNCC 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 3 cut(s) 61, 64, 394
Ppu21I YACGTR 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 450
Psp1406I AACGTT 2 cut(s) 348, 361
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 2 cut(s) 284, 369
PstNI CAGNNNCTG 2 cut(s) 65, 337
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 240, 250, 356
RsaNI GTAC 3 cut(s) 239, 249, 355
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 224, 273, 378
SatI GCNGC 3 cut(s) 60, 63, 393
Sau3AI GATC 3 cut(s) 259, 268, 313
Sau96I GGNCC 2 cut(s) 284, 369
SduI GDGCHC 2 cut(s) 137, 450
SinI GGWCC 2 cut(s) 284, 369
SnaBI TACGTA 1 cut(s) 354
Sse9I AATT 4 cut(s) 69, 82, 161, 493
SsiI CCGC 2 cut(s) 390, 393
SstI GAGCTC 1 cut(s) 450
StyI CCWWGG 2 cut(s) 201, 234
TaaI ACNGT 3 cut(s) 79, 91, 320
TaiI ACGT 4 cut(s) 351, 356, 364, 378
TaqI TCGA 2 cut(s) 258, 267
TaqII GACCGA 1 cut(s) 357
TasI AATT 4 cut(s) 69, 82, 161, 493
TauI GCSGC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 224, 273, 378
Tru9I TTAA 3 cut(s) 224, 273, 378
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 59, 62
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 4 cut(s) 65, 222, 286, 470
TspRI CASTG 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 2 cut(s) 284, 369
XapI RAATTY 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.