FvH4_1g10020

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004519
Physical Location & Seq
Forward (+)
5445166 .. 5446334
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10020.t1

Sequence Viewer

Length: 837 bp
ATGGCGACAACCAATTGCTCCGAGGACATGTTATCGGAAATTCTATGTAGATTACGTGTAAAATGTCTCAAGAGATTGCAATGTGTCGGCAAATCATGCTTGGTCAATTTTGACGAAAGCACAGATGATGTTGTTTCTATTGATTGGGTCAAGTTTTCAGATAATTCAGAGAATTGGTATAAAAATATAAACATTTCGGGTCCGCGCAATGGGATATATTGTCTGCATGAATATTCTCGTGAGGATCAGGTCAATGTAATTGCCCTGATGAATGTTTCGACCAGAGAATTTAAGCTAGTTCCATCACCAGAAGATTCGATTAGTTGGAACATATATTTTCGACCACCAGATTATGTCGAAATTGGGTTTGATCCTGAAACTAATGATTACAAGGGCGACATTACAGATCAATGTGATTGGTACATTCTTTCTTTTGACATGGTTGCTGAAGTGTTTGCAAAAATAGAGCTCCCTGCAGATTTGAGGATTGATTATAAGGAAATGACATATCTCCTTACAGTCTGTAATGAATCTCTCTCTCTTATTGCTTTTCCAAAGACACCAGATGATCACTGGCACACAAGCTACACAAAATGCTTTGACATATGGGTTATGAAGGAATATGGTAACGACAGATCTTGGACCAAGGAACTCACAACTGCACCAGTTGAAAATGCTGACGGATTACTAGGCCTCTGGCGAAATGGCGAATTTCTTATACTACATGAGAGAAGGGATACACCATCTCTTACAACCCAAGTACCCAAAAGACGGAGCAACTTTGTTTTGGTGAAGGGCTTCATTTGGATAAATCATGTATCTACTCAGAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

279

Amino Acids

32.36

Weight (kDa)

4.93

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 138 - 243 6.5e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccII CGCG 1 cut(s) 205
AciI CCGC 1 cut(s) 203
AclWI GGATC 2 cut(s) 252, 365
AcsI RAATTY 3 cut(s) 39, 287, 710
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 422, 762
AfiI CCNNNNNNNGG 2 cut(s) 209, 771
AflIII ACRYGT 2 cut(s) 27, 55
AgsI TTSAA 1 cut(s) 671
AluBI AGCT 3 cut(s) 295, 469, 585
AluI AGCT 3 cut(s) 295, 469, 585
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 252, 365
AoxI GGCC 1 cut(s) 691
ApoI RAATTY 3 cut(s) 39, 287, 710
Asp700I GAANNNNTTC 1 cut(s) 797
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 200, 642
AsuHPI GGTGA 2 cut(s) 297, 802
AvaII GGWCC 2 cut(s) 200, 642
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BanII GRGCYC 1 cut(s) 471
BauI CACGAG 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 471
BccI CCATC 2 cut(s) 310, 751
BciVI GTATCC 1 cut(s) 730
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 2 cut(s) 296, 689
BfmI CTRYAG 1 cut(s) 474
BfuI GTATCC 1 cut(s) 730
BglII AGATCT 1 cut(s) 635
Bme18I GGWCC 2 cut(s) 200, 642
BmgT120I GGNCC 2 cut(s) 200, 642
BmiI GGNNCC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 21, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 771
Bse1I ACTGG 2 cut(s) 578, 665
Bse3DI GCAATG 2 cut(s) 86, 214
BseDI CCNNGG 2 cut(s) 21, 645
BseLI CCNNNNNNNGG 2 cut(s) 209, 771
BseMI GCAATG 2 cut(s) 86, 214
BseNI ACTGG 2 cut(s) 578, 665
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 209, 771
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 5 cut(s) 244, 370, 406, 568, 635
BspACI CCGC 1 cut(s) 203
BspANI GGCC 1 cut(s) 693
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 2 cut(s) 252, 365
BsrDI GCAATG 2 cut(s) 86, 214
BsrI ACTGG 2 cut(s) 578, 665
BssECI CCNNGG 2 cut(s) 21, 645
BssMI GATC 5 cut(s) 244, 370, 406, 568, 635
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 520
BstAPI GCANNNNNTGC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 825
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 5 cut(s) 247, 373, 409, 571, 638
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 5 cut(s) 244, 370, 406, 568, 635
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 474
BstUI CGCG 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BsuI GTATCC 1 cut(s) 730
BsuRI GGCC 1 cut(s) 693
BtsIMutI CAGTG 1 cut(s) 571
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 200, 642
Csp6I GTAC 2 cut(s) 421, 761
CviAII CATG 6 cut(s) 28, 96, 227, 439, 725, 815
CviJI RGCY 6 cut(s) 295, 469, 585, 693, 798, 833
CviKI_1 RGCY 6 cut(s) 295, 469, 585, 693, 798, 833
CviQI GTAC 2 cut(s) 421, 761
DdeI CTNAG 1 cut(s) 825
DpnI GATC 5 cut(s) 246, 372, 408, 570, 637
DpnII GATC 5 cut(s) 244, 370, 406, 568, 635
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 645
Eco147I AGGCCT 1 cut(s) 693
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 200, 642
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 645
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 6 cut(s) 31, 99, 230, 442, 728, 818
FatI CATG 6 cut(s) 27, 95, 226, 438, 724, 814
FauNDI CATATG 1 cut(s) 605
FbaI TGATCA 1 cut(s) 568
FriOI GRGCYC 1 cut(s) 471
FspBI CTAG 2 cut(s) 296, 689
GlaI GCGC 1 cut(s) 206
HaeIII GGCC 1 cut(s) 693
HhaI GCGC 1 cut(s) 207
Hin1II CATG 6 cut(s) 31, 99, 230, 442, 728, 818
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 2 cut(s) 314, 530
HphI GGTGA 2 cut(s) 297, 802
Hpy188I TCNGA 5 cut(s) 22, 37, 160, 169, 828
Hpy188III TCNNGA 3 cut(s) 70, 239, 374
HpyAV CCTTC 3 cut(s) 610, 726, 787
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 5 cut(s) 79, 226, 458, 476, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 825
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 6 cut(s) 31, 99, 230, 442, 728, 818
HspAI GCGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 5 cut(s) 244, 370, 406, 568, 635
LmnI GCTCC 3 cut(s) 23, 474, 774
MaeI CTAG 2 cut(s) 296, 689
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 626
MalI GATC 5 cut(s) 246, 372, 408, 570, 637
MboI GATC 5 cut(s) 244, 370, 406, 568, 635
MboII GAAGA 1 cut(s) 323
MfeI CAATTG 1 cut(s) 13
MflI RGATCY 1 cut(s) 635
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 9 cut(s) 13, 39, 106, 163, 172, 258, 287, 360, 710
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 4 cut(s) 16, 235, 477, 704
MroXI GAANNNNTTC 1 cut(s) 797
MseI TTAA 1 cut(s) 291
MunI CAATTG 1 cut(s) 13
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeI CATATG 1 cut(s) 605
NdeII GATC 5 cut(s) 244, 370, 406, 568, 635
NlaIII CATG 6 cut(s) 31, 99, 230, 442, 728, 818
NlaIV GGNNCC 1 cut(s) 201
NspI RCATGY 1 cut(s) 31
PceI AGGCCT 1 cut(s) 693
PciI ACATGT 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 2 cut(s) 314, 530
Ppu21I YACGTR 1 cut(s) 56
PscI ACATGT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 2 cut(s) 200, 642
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 1 cut(s) 635
RsaI GTAC 2 cut(s) 422, 762
RsaNI GTAC 2 cut(s) 421, 761
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 5 cut(s) 244, 370, 406, 568, 635
Sau96I GGNCC 2 cut(s) 200, 642
SduI GDGCHC 1 cut(s) 471
SetI ASST 5 cut(s) 58, 252, 297, 471, 587
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 2 cut(s) 200, 642
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 9 cut(s) 13, 39, 106, 163, 172, 258, 287, 360, 710
SseBI AGGCCT 1 cut(s) 693
SsiI CCGC 1 cut(s) 203
SspI AATATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 296, 689
SstI GAGCTC 1 cut(s) 471
StuI AGGCCT 1 cut(s) 693
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 1 cut(s) 58
TaqI TCGA 4 cut(s) 278, 317, 340, 357
TasI AATT 9 cut(s) 13, 39, 106, 163, 172, 258, 287, 360, 710
TfiI GAWTC 2 cut(s) 314, 530
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 578
TspDTI ATGAA 5 cut(s) 243, 284, 543, 629, 790
TspGWI ACGGA 2 cut(s) 696, 787
TspRI CASTG 1 cut(s) 578
VpaK11BI GGWCC 2 cut(s) 200, 642
XapI RAATTY 3 cut(s) 39, 287, 710
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 2 cut(s) 296, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.