Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Forward (+)

5469575 .. 5470912

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCGAGATCATGCTCCGAGGATGTGTTGCCCGACATTCTTTGCAGATTGCGTGTAAAATCTCTGAAGAGATTCCAATGTGTCTGCAAATCTTGGTATGCTCTAATTAGGTGCCCAAGTTTTGTCACCAAACACCTCCACTTTAACAGCAGACAGAACAAGAATAATCGTTCCTTCCTGCTTTCTCACTCCCTGGATGTTGCTTATAAGTTAGAGTTGCCAACTGATCAACAAAAAGGCACTCGTTTCAGCTTGGTCCATATTGAGGAAACCACAGATGATATTGTTTCTCTTGATTGGATCAAGTTTACAGATAATTCAGAGCAAGGAAAGAAGTTTCCGGATTATTGGTATGAATATAATATAGAAATTTCTGGTCCACGCAATGGGATATATTGCTTACATGAATCTTCTAGGGATCACGGCCATGTAATTGCGCTGATGAATGTTTCACTGAGACAATTCAAGCTAGTTCCAAAACCAGAAGAATCGATTATTTCGCATACAGGTTTTCTATCACTAGCTGCTGTCGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGTTCTTTTTCAAGGACTGCTCTTTTCTCAAAGAAGGTTATCGTCAGGCTGCAGTATATCATTTAAATTCTAACTCATGGAAAAAGCTAAGTGATCCTTTGCTTGACCATGTTTATCTATATACTGCTCAAGATTTTAATACTGACACCTATGTCAACGGAAATGTTCACTGGTTGGCTTTTGAGCGCTACCCTGCAGGTCACTGTTGTGGTTTGTATATTCTTTCTTTTGACATGGTCGGTGAAGTGCTGGCAAAGATAGAGCTTCCTGCAGACTTGCGGATTAATTTTGATGAAACTCTATATGCCGTTGCAGTGGTCAATGAATCCCTTTCTCTGATTGTTTATCCACAAATTCTAGATTATCTTCGCCGGGAAAGAAGTTACACAAAATGCTTTGACATATGTGTTATGGAGGACTATGGTAACGAAAGATCTTGGACCAAGGAATTCACAACCGGACCAGTTGAAGATGCTGACAAACTACTAGGTATTTGGCGAAATGGCGAGTTTCTTATAAAACATATGAAGGGATACACCATCTCTTACGACCCAAGTACCCAAAAGATGGAGCAGCTTTGTTTTGGTGAAGGGCTTTATCTGAACAAATCATGTATCTACTCAGAAAGCCTAGTTTCAGTGACAGGGAATGCACCAAGTGATTATGAAATAGTAGTTGAAGACTTTCCCTTCGTCGTGACTCCAGACATGGAGAGAATCTTAGATTATCTAGAGAAATGTCCATCTTGTACCCGTTTAAGTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

446

Amino Acids

51.48

Weight (kDa)

5.53

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	111 - 380	2.9e-14	F-box associated beta propeller domain
FBA_1	PF07734	142 - 392	3.1e-17	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	207, 1085
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc36I	ACCTGC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	111
AccB7I	CCANNNNNTGG	2 cut(s)	386, 1135
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	847
AclWI	GGATC	4 cut(s)	308, 426, 539, 656
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	4 cut(s)	369, 634, 921, 1016
AcuI	CTGAAG	1 cut(s)	86
AdeI	CACNNNGTG	1 cut(s)	1226
AfaI	GTAC	2 cut(s)	1126, 1318
AfeI	AGCGCT	1 cut(s)	755
AfiI	CCNNNNNNNGG	3 cut(s)	265, 386, 1135
AgsI	TTSAA	4 cut(s)	466, 580, 1037, 1247
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	774
AluBI	AGCT	6 cut(s)	252, 469, 524, 655, 832, 1144
AluI	AGCT	6 cut(s)	252, 469, 524, 655, 832, 1144
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	4 cut(s)	308, 426, 539, 656
Aor13HI	TCCGGA	1 cut(s)	340
Aor51HI	AGCGCT	1 cut(s)	755
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	3 cut(s)	524, 617, 1141
ApoI	RAATTY	4 cut(s)	369, 634, 921, 1016
ArsI	GACNNNNNNTTYG	2 cut(s)	1241, 1273
AseI	ATTAAT	1 cut(s)	852
Asp700I	GAANNNNTTC	2 cut(s)	71, 1251
AspLEI	GCGC	2 cut(s)	439, 756
AspS9I	GGNCC	4 cut(s)	256, 377, 1008, 1028
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	3 cut(s)	118, 821, 1166
AvaII	GGWCC	4 cut(s)	256, 377, 1008, 1028
BaeGI	GKGCMC	1 cut(s)	116
BaeI	ACNNNNGTAYC	2 cut(s)	1108, 1141
BanI	GGYRCC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	1254
BbvI	GCAGC	3 cut(s)	511, 604, 1153
BccI	CCATC	3 cut(s)	1115, 1129, 1318
BceAI	ACGGC	2 cut(s)	439, 860
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	1094
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	941
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	7 cut(s)	414, 470, 521, 926, 1055, 1199, 1298
BfmI	CTRYAG	3 cut(s)	618, 762, 837
BfoI	RGCGCY	1 cut(s)	757
BfuAI	ACCTGC	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	1094
BglII	AGATCT	1 cut(s)	1001
BisI	GCNGC	3 cut(s)	525, 618, 1142
BlsI	GCNGC	3 cut(s)	526, 619, 1143
Bme1390I	CCNGG	2 cut(s)	194, 941
Bme18I	GGWCC	4 cut(s)	256, 377, 1008, 1028
BmgT120I	GGNCC	4 cut(s)	256, 377, 1008, 1028
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	194, 941
BmsI	GCATC	1 cut(s)	1030
BpiI	GAAGAC	1 cut(s)	1254
BpmI	CTGGAG	1 cut(s)	1254
BpuEI	CTTGAG	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	941
Bsa29I	ATCGAT	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	18, 192, 1011
BsaWI	WCCGGW	2 cut(s)	340, 1025
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 386, 1135
Bse1I	ACTGG	2 cut(s)	743, 1031
Bse3DI	GCAATG	1 cut(s)	391
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	491
BseDI	CCNNGG	3 cut(s)	18, 192, 1011
BseGI	GGATG	2 cut(s)	28, 202
BseLI	CCNNNNNNNGG	3 cut(s)	265, 386, 1135
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	2 cut(s)	446, 1203
BseNI	ACTGG	2 cut(s)	743, 1031
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	511, 604, 1153
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	491
BsiSI	CCGG	3 cut(s)	341, 940, 1026
BslI	CCNNNNNNNGG	3 cut(s)	265, 386, 1135
BsmAI	GTCTC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	1222
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
BspACI	CCGC	1 cut(s)	847
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	447, 1202
BspDI	ATCGAT	1 cut(s)	491
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	3 cut(s)	622, 766, 841
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	4 cut(s)	308, 426, 539, 656
BspT107I	GGYRCC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	743, 1031
BssECI	CCNNGG	3 cut(s)	18, 192, 1011
BssMI	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
BssT1I	CCWWGG	1 cut(s)	1011
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	773
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	4 cut(s)	455, 656, 1189, 1288
BstF5I	GGATG	2 cut(s)	28, 202
BstH2I	RGCGCY	1 cut(s)	757
BstHHI	GCGC	2 cut(s)	439, 756
BstKTI	GATC	7 cut(s)	11, 229, 303, 421, 547, 664, 1004
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	192, 939
BstSFI	CTRYAG	3 cut(s)	618, 762, 837
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	511, 604, 1153
BstV2I	GAAGAC	1 cut(s)	1254
BstX2I	RGATCY	1 cut(s)	1001
BstYI	RGATCY	1 cut(s)	1001
Bsu15I	ATCGAT	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	1094
BsuRI	GGCC	1 cut(s)	426
BsuTUI	ATCGAT	1 cut(s)	491
BtsCI	GGATG	2 cut(s)	28, 202
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	5 cut(s)	452, 736, 769, 888, 1212
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	1 cut(s)	819
CfoI	GCGC	2 cut(s)	439, 756
Cfr13I	GGNCC	4 cut(s)	256, 377, 1008, 1028
ClaI	ATCGAT	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	1125, 1317
CviAII	CATG	8 cut(s)	12, 404, 428, 645, 677, 802, 1179, 1276
CviQI	GTAC	2 cut(s)	1125, 1317
DdeI	CTNAG	4 cut(s)	455, 656, 1189, 1288
DpnI	GATC	7 cut(s)	10, 228, 302, 420, 546, 663, 1003
DpnII	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
DraI	TTTAAA	1 cut(s)	633
DraIII	CACNNNGTG	1 cut(s)	1226
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	1011
Eco47I	GGWCC	4 cut(s)	256, 377, 1008, 1028
Eco47III	AGCGCT	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	1011
ErhI	CCWWGG	1 cut(s)	1011
FaeI	CATG	8 cut(s)	15, 407, 431, 648, 680, 805, 1182, 1279
FalI	AAGNNNNNCTT	4 cut(s)	557, 589, 649, 681
FatI	CATG	8 cut(s)	11, 403, 427, 644, 676, 801, 1178, 1275
FauNDI	CATATG	2 cut(s)	971, 1092
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	525, 618, 1142
FokI	GGATG	2 cut(s)	35, 209
Fsp4HI	GCNGC	3 cut(s)	525, 618, 1142
FspBI	CTAG	7 cut(s)	414, 470, 521, 926, 1055, 1199, 1298
GlaI	GCGC	2 cut(s)	438, 755
GluI	GCNGC	3 cut(s)	525, 618, 1142
GsuI	CTGGAG	1 cut(s)	1254
HaeII	RGCGCY	1 cut(s)	757
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	3 cut(s)	341, 940, 1026
HhaI	GCGC	2 cut(s)	439, 756
Hin1II	CATG	8 cut(s)	15, 407, 431, 648, 680, 805, 1182, 1279
Hin6I	GCGC	2 cut(s)	437, 754
HinP1I	GCGC	2 cut(s)	437, 754
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	6 cut(s)	72, 407, 488, 893, 1267, 1284
HpaII	CCGG	3 cut(s)	341, 940, 1026
HphI	GGTGA	3 cut(s)	118, 821, 1166
Hpy166II	GTNNAC	4 cut(s)	309, 380, 724, 736
Hpy188I	TCNGA	7 cut(s)	19, 66, 322, 906, 1170, 1192, 1333
Hpy188III	TCNNGA	7 cut(s)	293, 341, 698, 926, 1264, 1271, 1298
Hpy8I	GTNNAC	4 cut(s)	309, 380, 724, 736
Hpy99I	CGWCG	1 cut(s)	1265
HpyAV	CCTTC	5 cut(s)	184, 596, 1090, 1151, 1267
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4V	TGCA	7 cut(s)	45, 87, 620, 764, 839, 881, 1220
HpyF3I	CTNAG	4 cut(s)	455, 656, 1189, 1288
Hsp92II	CATG	8 cut(s)	15, 407, 431, 648, 680, 805, 1182, 1279
HspAI	GCGC	2 cut(s)	437, 754
Kpn2I	TCCGGA	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
LmnI	GCTCC	2 cut(s)	20, 1138
Lsp1109I	GCAGC	3 cut(s)	511, 604, 1153
LweI	GCATC	1 cut(s)	1030
MaeI	CTAG	7 cut(s)	414, 470, 521, 926, 1055, 1199, 1298
MaeIII	GTNAC	6 cut(s)	124, 767, 950, 992, 1207, 1264
MalI	GATC	7 cut(s)	10, 228, 302, 420, 546, 663, 1003
MboI	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
MboII	GAAGA	6 cut(s)	79, 402, 497, 926, 1049, 1259
MflI	RGATCY	1 cut(s)	1001
MhlI	GDGCHC	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	1261
MnlI	CCTC	4 cut(s)	13, 146, 259, 976
MroI	TCCGGA	1 cut(s)	340
MroXI	GAANNNNTTC	2 cut(s)	71, 1251
MseI	TTAA	5 cut(s)	144, 632, 705, 852, 1325
MslI	CAYNNNNRTG	2 cut(s)	426, 774
MspI	CCGG	3 cut(s)	341, 940, 1026
MspR9I	CCNGG	2 cut(s)	194, 941
Mva1269I	GAATGC	1 cut(s)	1222
MvaI	CCWGG	1 cut(s)	194
NciI	CCSGG	1 cut(s)	941
NdeI	CATATG	2 cut(s)	971, 1092
NdeII	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
NlaIII	CATG	8 cut(s)	15, 407, 431, 648, 680, 805, 1182, 1279
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	4 cut(s)	124, 767, 1207, 1264
OliI	CACNNNNGTG	1 cut(s)	774
PctI	GAATGC	1 cut(s)	1222
PdmI	GAANNNNTTC	2 cut(s)	71, 1251
PfeI	GAWTC	5 cut(s)	72, 407, 488, 893, 1284
PflFI	GACNNNGTC	1 cut(s)	803
PflMI	CCANNNNNTGG	2 cut(s)	386, 1135
PkrI	GCNGC	3 cut(s)	526, 619, 1143
PleI	GAGTC	1 cut(s)	1261
PpsI	GAGTC	1 cut(s)	1261
PshBI	ATTAAT	1 cut(s)	852
PsiI	TTATAA	2 cut(s)	207, 1085
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	4 cut(s)	256, 377, 1008, 1028
PstI	CTGCAG	3 cut(s)	622, 766, 841
PsuI	RGATCY	1 cut(s)	1001
PsyI	GACNNNGTC	1 cut(s)	803
RsaI	GTAC	2 cut(s)	1126, 1318
RsaNI	GTAC	2 cut(s)	1125, 1317
RseI	CAYNNNNRTG	2 cut(s)	426, 774
SaqAI	TTAA	5 cut(s)	144, 632, 705, 852, 1325
SatI	GCNGC	3 cut(s)	525, 618, 1142
Sau3AI	GATC	7 cut(s)	8, 226, 300, 418, 544, 661, 1001
Sau96I	GGNCC	4 cut(s)	256, 377, 1008, 1028
SbfI	CCTGCAGG	1 cut(s)	766
SchI	GAGTC	1 cut(s)	1261
ScrFI	CCNGG	2 cut(s)	194, 941
SdaI	CCTGCAGG	1 cut(s)	766
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	1030
SfcI	CTRYAG	3 cut(s)	618, 762, 837
SinI	GGWCC	4 cut(s)	256, 377, 1008, 1028
SmiI	ATTTAAAT	1 cut(s)	633
SmiMI	CAYNNNNRTG	2 cut(s)	426, 774
SmlI	CTYRAG	1 cut(s)	696
SmoI	CTYRAG	1 cut(s)	696
Sse8387I	CCTGCAGG	1 cut(s)	766
SsiI	CCGC	1 cut(s)	847
SspMI	CTAG	7 cut(s)	414, 470, 521, 926, 1055, 1199, 1298
StyD4I	CCNGG	2 cut(s)	192, 939
StyI	CCWWGG	1 cut(s)	1011
SwaI	ATTTAAAT	1 cut(s)	633
TaaI	ACNGT	1 cut(s)	773
TaqI	TCGA	2 cut(s)	491, 531
TfiI	GAWTC	5 cut(s)	72, 407, 488, 893, 1284
Tru1I	TTAA	5 cut(s)	144, 632, 705, 852, 1325
Tru9I	TTAA	5 cut(s)	144, 632, 705, 852, 1325
TscAI	CASTG	5 cut(s)	459, 743, 776, 888, 1212
TseFI	GTSAC	4 cut(s)	124, 767, 1207, 1264
TseI	GCWGC	3 cut(s)	524, 617, 1141
Tsp45I	GTSAC	4 cut(s)	124, 767, 1207, 1264
TspDTI	ATGAA	7 cut(s)	369, 420, 458, 876, 906, 1109, 1248
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	5 cut(s)	459, 743, 776, 888, 1212
Tth111I	GACNNNGTC	1 cut(s)	803
Van91I	CCANNNNNTGG	2 cut(s)	386, 1135
VpaK11BI	GGWCC	4 cut(s)	256, 377, 1008, 1028
VspI	ATTAAT	1 cut(s)	852
XapI	RAATTY	4 cut(s)	369, 634, 921, 1016
XbaI	TCTAGA	2 cut(s)	925, 1297
XmnI	GAANNNNTTC	2 cut(s)	71, 1251
XspI	CTAG	7 cut(s)	414, 470, 521, 926, 1055, 1199, 1298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.