Rh2AG108500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004519
Physical Location & Seq
Forward (+)
9583874 .. 9587728
3855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG108500.1

Sequence Viewer

Length: 1170 bp
ATGCTTCTAGAAAGGGCAAATCGCAGAACTGAAAATTGGGGTAAAGTTCAGATCGATCTAGAACTTGATAAAGAAGACAAAAACCAGATATTTTTCAAACGCACAGACGAAACCACTGGTGGCATTGTTTCTCTTGATTGGCTTAAGTTTTCAGATATTTCAGACCAAGGAAACAAGTTTCCGAATTATTGGTATGGAGATGTAGAAATTTCTGGTCCACGCAATGGCATATATTGCCTGCATGAAGCATCTCAAGATCACAGCGATGTGATTGCACTGGTGAATATTTCGTTGAGAGAATTCAAGCTAGTTCCAAAACCAGAACAATCGATTATTTGGCATCCAGGTTATTTTGCACTAGACTGGGTCGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGTTTTTTTTCAAGGAATTATGCAGTACTGATACCCAGGAAAGTGAACGTCAGGCTGCAATATATCATTTAAGTTCTAATTCATGGAAAAAGCTAAGTGCTTCTTTGCTTGAGCATGTTATTCTATATTTTCGAGATTGTAATATTACTGACACCTATGTCAACGGACGTGTTCACTGGTTGGGTTTTGAGGACTACCCTGGTCGCAGAGATTGGTGTATTCTTTCTTTTGACATGGTTAGTGAAGTGTTTGCAAAGATAAAGTTTCCAGACTTGAGTATTAATTGGGACGAAACTGAATATCTTCTTGCAGTGTTTAATGAATCTCTTTCTCTTATTCTTTATCCAAAGACGCCAGATTATCCCATGTTTACAGGTTACATTAAATGTTTTGACATATGGGTTATGAATGACTATGGTAACGACAGATCTTGGACTAAGCTTTTCACAACTGGACCAGTTGCATCTGCTTACAGACTACTAGGTTTTTGGCGAAATGGCGACTTTCTTATACAACATGATTTTGGATACACCATCTCTTACGACCCAGGTACCCAAGAGATCGAGCCGCTTTGTTTTGGTGAAGGGCTTCATTTGAACCAATCTCGTATCTACTCAGAGAGCCTAGTTTCAGTGACGGGGAATGCACGAAATGATTTTGAAATAGTAGTTGAAGACTTTCCCTTCGTCATGACTCCAGACATGAAGAGAGTCCTAGACTACATAGAGAAATGTCCATCTTGTTCCCATTTAACTTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

389

Amino Acids

45.33

Weight (kDa)

4.79

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 58 - 286 3.4e-13 F-box associated beta propeller domain
FBA_1 PF07734 89 - 309 2.3e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 563
Acc65I GGTACC 1 cut(s) 956
AccB1I GGYRCC 1 cut(s) 956
AccB7I CCANNNNNTGG 1 cut(s) 224
AciI CCGC 1 cut(s) 974
AclWI GGATC 1 cut(s) 377
AcsI RAATTY 2 cut(s) 207, 299
AcyI GRCGYC 1 cut(s) 758
AfaI GTAC 2 cut(s) 433, 958
AfiI CCNNNNNNNGG 1 cut(s) 224
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 6 cut(s) 97, 304, 418, 1003, 1067, 1079
AjiI CACGTC 1 cut(s) 575
AjnI CCWGG 4 cut(s) 343, 441, 604, 952
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 3 cut(s) 307, 499, 847
AluI AGCT 3 cut(s) 307, 499, 847
AlwI GGATC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 207, 299
ArsI GACNNNNNNTTYG 2 cut(s) 1073, 1105
AseI ATTAAT 1 cut(s) 687
Asp700I GAANNNNTTC 3 cut(s) 708, 993, 1083
Asp718I GGTACC 1 cut(s) 956
AspS9I GGNCC 2 cut(s) 215, 860
AsuHPI GGTGA 2 cut(s) 292, 998
AvaII GGWCC 2 cut(s) 215, 860
BaeI ACNNNNGTAYC 2 cut(s) 940, 973
BanI GGYRCC 1 cut(s) 956
BbsI GAAGAC 2 cut(s) 81, 1086
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 947, 1150
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 4 cut(s) 345, 443, 606, 954
BciVI GTATCC 1 cut(s) 926
BfaI CTAG 7 cut(s) 8, 59, 308, 359, 887, 1031, 1121
BfrI CTTAAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 926
BglII AGATCT 1 cut(s) 833
BisI GCNGC 2 cut(s) 462, 974
BlsI GCNGC 2 cut(s) 463, 975
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 4 cut(s) 345, 443, 606, 954
Bme18I GGWCC 2 cut(s) 215, 860
BmgBI CACGTC 1 cut(s) 575
BmgT120I GGNCC 2 cut(s) 215, 860
BmiI GGNNCC 1 cut(s) 958
BmrFI CCNGG 4 cut(s) 345, 443, 606, 954
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 3 cut(s) 257, 349, 878
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 81, 1086
BpmI CTGGAG 1 cut(s) 1086
BpuEI CTTGAG 3 cut(s) 237, 536, 700
Bsa29I ATCGAT 2 cut(s) 54, 329
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 4 cut(s) 166, 441, 604, 952
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 6 cut(s) 121, 282, 368, 587, 862, 863
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 4 cut(s) 345, 443, 606, 954
BseCI ATCGAT 2 cut(s) 54, 329
BseDI CCNNGG 4 cut(s) 166, 441, 604, 952
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 1035
BseNI ACTGG 6 cut(s) 121, 282, 368, 587, 862, 863
BseXI GCAGC 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 956
BshVI ATCGAT 2 cut(s) 54, 329
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 1054
Bsp143I GATC 6 cut(s) 51, 55, 256, 382, 833, 966
BspACI CCGC 1 cut(s) 974
BspCNI CTCAG 1 cut(s) 1034
BspDI ATCGAT 2 cut(s) 54, 329
BspHI TCATGA 1 cut(s) 1095
BspLI GGNNCC 1 cut(s) 958
BspPI GGATC 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 956
BspTI CTTAAG 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 6 cut(s) 121, 282, 368, 587, 862, 863
BssECI CCNNGG 4 cut(s) 166, 441, 604, 952
BssMI GATC 6 cut(s) 51, 55, 256, 382, 833, 966
BssNI GRCGYC 1 cut(s) 758
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 4 cut(s) 345, 443, 606, 954
Bst6I CTCTTC 1 cut(s) 1106
BstACI GRCGYC 1 cut(s) 758
BstAFI CTTAAG 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 500, 843, 1021
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 6 cut(s) 54, 58, 259, 385, 836, 969
BstMBI GATC 6 cut(s) 51, 55, 256, 382, 833, 966
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 4 cut(s) 345, 443, 606, 954
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 4 cut(s) 343, 441, 604, 952
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 2 cut(s) 81, 1086
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
Bsu15I ATCGAT 2 cut(s) 54, 329
BsuI GTATCC 1 cut(s) 926
BsuTUI ATCGAT 2 cut(s) 54, 329
BtgZI GCGATG 1 cut(s) 279
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 5 cut(s) 114, 275, 580, 723, 1044
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 1 cut(s) 1095
Cfr13I GGNCC 2 cut(s) 215, 860
ClaI ATCGAT 2 cut(s) 54, 329
CseI GACGC 1 cut(s) 766
Csp6I GTAC 2 cut(s) 432, 957
CviAII CATG 8 cut(s) 242, 489, 521, 640, 772, 923, 1096, 1108
CviJI RGCY 8 cut(s) 142, 307, 461, 499, 847, 973, 994, 1029
CviKI_1 RGCY 8 cut(s) 142, 307, 461, 499, 847, 973, 994, 1029
CviQI GTAC 2 cut(s) 432, 957
DdeI CTNAG 3 cut(s) 500, 843, 1021
DpnI GATC 6 cut(s) 53, 57, 258, 384, 835, 968
DpnII GATC 6 cut(s) 51, 55, 256, 382, 833, 966
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
Eam1104I CTCTTC 1 cut(s) 1106
EarI CTCTTC 1 cut(s) 1106
Eco130I CCWWGG 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 215, 860
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 4 cut(s) 343, 441, 604, 952
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 8 cut(s) 245, 492, 524, 643, 775, 926, 1099, 1111
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 1 cut(s) 707
FatI CATG 8 cut(s) 241, 488, 520, 639, 771, 922, 1095, 1107
FauNDI CATATG 1 cut(s) 803
Fnu4HI GCNGC 2 cut(s) 462, 974
FokI GGATG 1 cut(s) 327
Fsp4HI GCNGC 2 cut(s) 462, 974
FspBI CTAG 7 cut(s) 8, 59, 308, 359, 887, 1031, 1121
GluI GCNGC 2 cut(s) 462, 974
GsuI CTGGAG 1 cut(s) 1086
HgaI GACGC 1 cut(s) 766
Hin1I GRCGYC 1 cut(s) 758
Hin1II CATG 8 cut(s) 245, 492, 524, 643, 775, 926, 1099, 1111
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 3 cut(s) 728, 1099, 1116
HphI GGTGA 2 cut(s) 292, 998
Hpy166II GTNNAC 5 cut(s) 218, 452, 568, 580, 777
Hpy188I TCNGA 6 cut(s) 51, 154, 163, 183, 1024, 1165
Hpy188III TCNNGA 8 cut(s) 8, 59, 134, 254, 539, 674, 1096, 1103
Hpy8I GTNNAC 5 cut(s) 218, 452, 568, 580, 777
HpyAV CCTTC 2 cut(s) 983, 1099
HpyCH4IV ACGT 2 cut(s) 454, 574
HpyCH4V TGCA 9 cut(s) 241, 275, 356, 429, 464, 659, 716, 869, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 3 cut(s) 500, 843, 1021
HpySE526I ACGT 2 cut(s) 454, 574
Hsp92I GRCGYC 1 cut(s) 758
Hsp92II CATG 8 cut(s) 245, 492, 524, 643, 775, 926, 1099, 1111
KpnI GGTACC 1 cut(s) 960
Kzo9I GATC 6 cut(s) 51, 55, 256, 382, 833, 966
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 3 cut(s) 257, 349, 878
MaeI CTAG 7 cut(s) 8, 59, 308, 359, 887, 1031, 1121
MaeII ACGT 2 cut(s) 454, 574
MaeIII GTNAC 3 cut(s) 782, 824, 1039
MalI GATC 6 cut(s) 53, 57, 258, 384, 835, 968
MboI GATC 6 cut(s) 51, 55, 256, 382, 833, 966
MboII GAAGA 4 cut(s) 86, 701, 1091, 1123
MflI RGATCY 1 cut(s) 833
MluCI AATT 8 cut(s) 34, 184, 207, 299, 372, 422, 484, 688
MlyI GAGTC 2 cut(s) 1093, 1125
MnlI CCTC 1 cut(s) 589
MroXI GAANNNNTTC 3 cut(s) 708, 993, 1083
MseI TTAA 6 cut(s) 144, 476, 687, 723, 789, 1157
MslI CAYNNNNRTG 1 cut(s) 264
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 4 cut(s) 345, 443, 606, 954
Mva1269I GAATGC 1 cut(s) 1054
MvaI CCWGG 4 cut(s) 345, 443, 606, 954
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeI CATATG 1 cut(s) 803
NdeII GATC 6 cut(s) 51, 55, 256, 382, 833, 966
NlaIII CATG 8 cut(s) 245, 492, 524, 643, 775, 926, 1099, 1111
NlaIV GGNNCC 1 cut(s) 958
NmuCI GTSAC 1 cut(s) 1039
NspI RCATGY 1 cut(s) 524
PagI TCATGA 1 cut(s) 1095
PctI GAATGC 1 cut(s) 1054
PdmI GAANNNNTTC 3 cut(s) 708, 993, 1083
PfeI GAWTC 1 cut(s) 728
PflFI GACNNNGTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 2 cut(s) 463, 975
PleI GAGTC 2 cut(s) 1093, 1124
PpsI GAGTC 2 cut(s) 1093, 1124
PshBI ATTAAT 1 cut(s) 687
Psp6I CCWGG 4 cut(s) 343, 441, 604, 952
PspGI CCWGG 4 cut(s) 343, 441, 604, 952
PspN4I GGNNCC 1 cut(s) 958
PspPI GGNCC 2 cut(s) 215, 860
PsuI RGATCY 1 cut(s) 833
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 2 cut(s) 433, 958
RsaNI GTAC 2 cut(s) 432, 957
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 6 cut(s) 144, 476, 687, 723, 789, 1157
SatI GCNGC 2 cut(s) 462, 974
Sau3AI GATC 6 cut(s) 51, 55, 256, 382, 833, 966
Sau96I GGNCC 2 cut(s) 215, 860
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 2 cut(s) 1093, 1125
ScrFI CCNGG 4 cut(s) 345, 443, 606, 954
SfaNI GCATC 3 cut(s) 257, 349, 878
SinI GGWCC 2 cut(s) 215, 860
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 4 cut(s) 143, 252, 515, 679
SmoI CTYRAG 4 cut(s) 143, 252, 515, 679
Sse9I AATT 8 cut(s) 34, 184, 207, 299, 372, 422, 484, 688
SsiI CCGC 1 cut(s) 974
SspI AATATT 2 cut(s) 286, 550
SspMI CTAG 7 cut(s) 8, 59, 308, 359, 887, 1031, 1121
StyD4I CCNGG 4 cut(s) 343, 441, 604, 952
StyI CCWWGG 1 cut(s) 166
TaiI ACGT 2 cut(s) 457, 577
TaqI TCGA 5 cut(s) 54, 329, 369, 538, 969
TasI AATT 8 cut(s) 34, 184, 207, 299, 372, 422, 484, 688
TatI WGTACW 1 cut(s) 431
TauI GCSGC 1 cut(s) 976
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 6 cut(s) 144, 476, 687, 723, 789, 1157
Tru9I TTAA 6 cut(s) 144, 476, 687, 723, 789, 1157
TscAI CASTG 5 cut(s) 121, 282, 587, 723, 1044
TseFI GTSAC 1 cut(s) 1039
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 1039
TspDTI ATGAA 6 cut(s) 258, 477, 741, 827, 986, 1124
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 5 cut(s) 121, 282, 587, 723, 1044
Tth111I GACNNNGTC 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 215, 860
VspI ATTAAT 1 cut(s) 687
XapI RAATTY 2 cut(s) 207, 299
XbaI TCTAGA 2 cut(s) 7, 58
XceI RCATGY 1 cut(s) 524
XmnI GAANNNNTTC 3 cut(s) 708, 993, 1083
XspI CTAG 7 cut(s) 8, 59, 308, 359, 887, 1031, 1121
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.