Rh2CG112500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004519
Physical Location & Seq
Forward (+)
9915770 .. 9920847
5078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG112500.1

Sequence Viewer

Length: 516 bp
ATGGTCGATGAACTGTTTTCAGATATTTCAGACCAAGGAAACAAGTTTCCGAATTATTGGTATGGAGATGTAGAAATTTCTGGTCCACGCAATGGCATATATTGCCTGCATGAAGCATCTCAAGATCACAGCGATGTAATTGCACTGGTGAATATTTCGTTGAGAGAATTCAAGCTAGTTCCAAAACCAGAACAATCGATTATTTGGCATCCAGGTTATTTTGCACTAGACTGGGTCGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGTTTTTTTTCAAGGAATTATGCAGTACTGATACCCAGGAAAGTGAACGTCAGGCTGCAATATATCATTTAAGTTCTAATTCATGGAAAAAGCTAAGTGCTCCTTTGCTTGAGCATGTTATTCTATATTTTCGAGATTGTAATATTACTGACACCTATGTCAACGGACGTGTTCACTGGTTGGGTTTTGAGGACTACCCTGGTCGCAGAGATTGGTGTATTCTTTCTTTTGACATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

171

Amino Acids

20.01

Weight (kDa)

4.83

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 24 - 170 3.1e-07 F-box associated beta propeller domain
FBA_1 PF07734 45 - 170 8.3e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 92
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 2 cut(s) 75, 167
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 2 cut(s) 172, 286
AjiI CACGTC 1 cut(s) 443
AjnI CCWGG 3 cut(s) 211, 309, 472
AluBI AGCT 2 cut(s) 175, 367
AluI AGCT 2 cut(s) 175, 367
Alw21I GWGCWC 1 cut(s) 376
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 75, 167
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 3 cut(s) 213, 311, 474
BfaI CTAG 2 cut(s) 176, 227
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 3 cut(s) 213, 311, 474
Bme18I GGWCC 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 83
BmrFI CCNGG 3 cut(s) 213, 311, 474
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 125, 217
BmuI ACTGGG 1 cut(s) 241
BpuEI CTTGAG 2 cut(s) 105, 404
Bsa29I ATCGAT 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 34, 309, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 150, 236, 455
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 3 cut(s) 213, 311, 474
BseCI ATCGAT 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 34, 309, 472
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 97
BseNI ACTGG 3 cut(s) 150, 236, 455
BseXI GCAGC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 2 cut(s) 124, 250
BspDI ATCGAT 1 cut(s) 197
BspPI GGATC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 3 cut(s) 150, 236, 455
BssECI CCNNGG 3 cut(s) 34, 309, 472
BssMI GATC 2 cut(s) 124, 250
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 3 cut(s) 213, 311, 474
Bst4CI ACNGT 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 2 cut(s) 127, 253
BstMBI GATC 2 cut(s) 124, 250
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 3 cut(s) 213, 311, 474
BstNSI RCATGY 2 cut(s) 392, 511
BstSCI CCNGG 3 cut(s) 211, 309, 472
BstV1I GCAGC 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 197
BtgZI GCGATG 1 cut(s) 147
BtrI CACGTC 1 cut(s) 443
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 143, 448
Cac8I GCNNGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 83
ClaI ATCGAT 1 cut(s) 197
Csp6I GTAC 1 cut(s) 300
CviAII CATG 5 cut(s) 110, 357, 389, 508, 513
CviJI RGCY 3 cut(s) 175, 329, 367
CviKI_1 RGCY 3 cut(s) 175, 329, 367
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 1 cut(s) 368
DpnI GATC 2 cut(s) 126, 252
DpnII GATC 2 cut(s) 124, 250
DrdI GACNNNNNNGTC 1 cut(s) 431
DseDI GACNNNNNNGTC 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 211, 309, 472
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 5 cut(s) 113, 360, 392, 511, 516
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FatI CATG 5 cut(s) 109, 356, 388, 507, 512
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 2 cut(s) 176, 227
GluI GCNGC 1 cut(s) 330
Hin1II CATG 5 cut(s) 113, 360, 392, 511, 516
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 4 cut(s) 86, 320, 436, 448
Hpy188I TCNGA 3 cut(s) 22, 31, 51
Hpy188III TCNNGA 2 cut(s) 122, 407
Hpy8I GTNNAC 4 cut(s) 86, 320, 436, 448
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 322, 442
HpyCH4V TGCA 5 cut(s) 109, 143, 224, 297, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 2 cut(s) 322, 442
Hsp92II CATG 5 cut(s) 113, 360, 392, 511, 516
Kzo9I GATC 2 cut(s) 124, 250
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 125, 217
MaeI CTAG 2 cut(s) 176, 227
MaeII ACGT 2 cut(s) 322, 442
MalI GATC 2 cut(s) 126, 252
MboI GATC 2 cut(s) 124, 250
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 7 cut(s) 52, 75, 138, 167, 240, 290, 352
MnlI CCTC 1 cut(s) 457
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 132
MspR9I CCNGG 3 cut(s) 213, 311, 474
MvaI CCWGG 3 cut(s) 213, 311, 474
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 2 cut(s) 124, 250
NlaIII CATG 5 cut(s) 113, 360, 392, 511, 516
NspI RCATGY 2 cut(s) 392, 511
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 1 cut(s) 331
Psp6I CCWGG 3 cut(s) 211, 309, 472
PspGI CCWGG 3 cut(s) 211, 309, 472
PspPI GGNCC 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 124, 250
Sau96I GGNCC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 213, 311, 474
SduI GDGCHC 1 cut(s) 376
SetI ASST 7 cut(s) 177, 217, 276, 325, 369, 431, 445
SfaNI GCATC 2 cut(s) 125, 217
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 120, 383
SmoI CTYRAG 2 cut(s) 120, 383
Sse9I AATT 7 cut(s) 52, 75, 138, 167, 240, 290, 352
SspI AATATT 2 cut(s) 154, 418
SspMI CTAG 2 cut(s) 176, 227
StyD4I CCNGG 3 cut(s) 211, 309, 472
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 2 cut(s) 325, 445
TaqI TCGA 4 cut(s) 6, 197, 237, 406
TasI AATT 7 cut(s) 52, 75, 138, 167, 240, 290, 352
TatI WGTACW 1 cut(s) 299
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 150, 455
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 24, 126, 345
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 2 cut(s) 150, 455
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 83
XapI RAATTY 2 cut(s) 75, 167
XceI RCATGY 2 cut(s) 392, 511
XspI CTAG 2 cut(s) 176, 227
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.