Rh2DG111900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004519
Physical Location & Seq
Forward (+)
9200018 .. 9216734
16717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG111900.1

Sequence Viewer

Length: 606 bp
ATGGTGACTTACATAGCCATTGAACTGTCAAGCAGCTGCTTCTACTTCCTAAGCACTCGACATGACGAAACCGCTGGTGGTATTGTTTCTCTTGATTGGCTTAAGTTTTCAGATATTTCAGACCAAGGAAACAAGTTTCCGAATTATTGGTATGGAGATGTAGAAATTTCTGGTCCACGCAATGGCATATATTGCCTGCATGAAGCATCTCAAGATCACAGCGATGTAATTGCACTGGTGAATATTTCGTTGAGAGAATTCAAGCTAGTTCCAAAACCAGAACAATCGATTATTTGGCATCCAGGTTATTTTGCACTAGACTGGGTCGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGTTTTTTTTCAAGGAATTATGCAGTACTGATACCCAGGAAAGTGAACGTCAGGCTGCAATATATCATTTAAGTTCTAATTCATGGAAAAAGCTAAGTGCTCCTTTGCTTGAGCATGTTATTCTATATTTTCGAGATTGTAATATTACTGACACCTATGTCAACGGACGTGTTCACTGGTTGGGTTTTGAGGACTACCCTGGTCGCAGAGATTGGTGCATTCTTTCTTTTGATATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

201

Amino Acids

23.36

Weight (kDa)

4.96

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 38 - 200 2.2e-07 F-box associated beta propeller domain
FBA_1 PF07734 75 - 200 1.4e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 2 cut(s) 165, 257
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 1 cut(s) 182
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 3 cut(s) 23, 262, 376
AjiI CACGTC 1 cut(s) 533
AjnI CCWGG 3 cut(s) 301, 399, 562
AluBI AGCT 3 cut(s) 36, 265, 457
AluI AGCT 3 cut(s) 36, 265, 457
Alw21I GWGCWC 1 cut(s) 466
AlwI GGATC 1 cut(s) 335
ApeKI GCWGC 3 cut(s) 33, 36, 419
ApoI RAATTY 2 cut(s) 165, 257
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 16, 250
AvaII GGWCC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 3 cut(s) 23, 45, 406
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 3 cut(s) 303, 401, 564
BfaI CTAG 2 cut(s) 266, 317
BfrI CTTAAG 1 cut(s) 101
BisI GCNGC 3 cut(s) 34, 37, 420
BlsI GCNGC 3 cut(s) 35, 38, 421
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 3 cut(s) 303, 401, 564
Bme18I GGWCC 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 3 cut(s) 303, 401, 564
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 215, 307
BmuI ACTGGG 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 195, 494
Bsa29I ATCGAT 1 cut(s) 287
BsaJI CCNNGG 3 cut(s) 124, 399, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 3 cut(s) 240, 326, 545
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 3 cut(s) 303, 401, 564
BseCI ATCGAT 1 cut(s) 287
BseDI CCNNGG 3 cut(s) 124, 399, 562
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 187
BseNI ACTGG 3 cut(s) 240, 326, 545
BseXI GCAGC 3 cut(s) 23, 45, 406
BshVI ATCGAT 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 182
BsmI GAATGC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 214, 340
BspACI CCGC 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 287
BspPI GGATC 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 3 cut(s) 240, 326, 545
BssECI CCNNGG 3 cut(s) 124, 399, 562
BssMI GATC 2 cut(s) 214, 340
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 3 cut(s) 303, 401, 564
Bst4CI ACNGT 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 50, 458
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 217, 343
BstMBI GATC 2 cut(s) 214, 340
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNI CCWGG 3 cut(s) 303, 401, 564
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 3 cut(s) 301, 399, 562
BstV1I GCAGC 3 cut(s) 23, 45, 406
Bsu15I ATCGAT 1 cut(s) 287
BsuTUI ATCGAT 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 237
BtrI CACGTC 1 cut(s) 533
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 233, 538
Cac8I GCNNGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 287
Csp6I GTAC 1 cut(s) 390
CviAII CATG 5 cut(s) 62, 200, 447, 479, 603
CviJI RGCY 6 cut(s) 17, 36, 100, 265, 419, 457
CviKI_1 RGCY 6 cut(s) 17, 36, 100, 265, 419, 457
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 2 cut(s) 50, 458
DpnI GATC 2 cut(s) 216, 342
DpnII GATC 2 cut(s) 214, 340
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 301, 399, 562
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 5 cut(s) 65, 203, 450, 482, 606
FalI AAGNNNNNCTT 2 cut(s) 451, 483
FatI CATG 5 cut(s) 61, 199, 446, 478, 602
Fnu4HI GCNGC 3 cut(s) 34, 37, 420
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 3 cut(s) 34, 37, 420
FspBI CTAG 2 cut(s) 266, 317
GluI GCNGC 3 cut(s) 34, 37, 420
Hin1II CATG 5 cut(s) 65, 203, 450, 482, 606
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HphI GGTGA 2 cut(s) 16, 250
Hpy166II GTNNAC 4 cut(s) 176, 410, 526, 538
Hpy188I TCNGA 3 cut(s) 112, 121, 141
Hpy188III TCNNGA 3 cut(s) 92, 212, 497
Hpy8I GTNNAC 4 cut(s) 176, 410, 526, 538
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 2 cut(s) 412, 532
HpyCH4V TGCA 6 cut(s) 199, 233, 314, 387, 422, 582
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 50, 458
HpySE526I ACGT 2 cut(s) 412, 532
Hsp92II CATG 5 cut(s) 65, 203, 450, 482, 606
Kzo9I GATC 2 cut(s) 214, 340
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 3 cut(s) 23, 45, 406
LweI GCATC 2 cut(s) 215, 307
MaeI CTAG 2 cut(s) 266, 317
MaeII ACGT 2 cut(s) 412, 532
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 216, 342
MboI GATC 2 cut(s) 214, 340
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 7 cut(s) 142, 165, 228, 257, 330, 380, 442
MnlI CCTC 1 cut(s) 547
MseI TTAA 2 cut(s) 102, 434
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 2 cut(s) 36, 74
MspCI CTTAAG 1 cut(s) 101
MspR9I CCNGG 3 cut(s) 303, 401, 564
Mva1269I GAATGC 1 cut(s) 582
MvaI CCWGG 3 cut(s) 303, 401, 564
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 2 cut(s) 214, 340
NlaIII CATG 5 cut(s) 65, 203, 450, 482, 606
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 482
PctI GAATGC 1 cut(s) 582
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 3 cut(s) 35, 38, 421
Psp6I CCWGG 3 cut(s) 301, 399, 562
PspGI CCWGG 3 cut(s) 301, 399, 562
PspPI GGNCC 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 36
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 102, 434
SatI GCNGC 3 cut(s) 34, 37, 420
Sau3AI GATC 2 cut(s) 214, 340
Sau96I GGNCC 1 cut(s) 173
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 3 cut(s) 303, 401, 564
SduI GDGCHC 1 cut(s) 466
SetI ASST 8 cut(s) 38, 267, 307, 366, 415, 459, 521, 535
SfaNI GCATC 2 cut(s) 215, 307
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 3 cut(s) 101, 210, 473
SmoI CTYRAG 3 cut(s) 101, 210, 473
Sse9I AATT 7 cut(s) 142, 165, 228, 257, 330, 380, 442
SsiI CCGC 1 cut(s) 72
SspI AATATT 2 cut(s) 244, 508
SspMI CTAG 2 cut(s) 266, 317
StyD4I CCNGG 3 cut(s) 301, 399, 562
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 2 cut(s) 415, 535
TaqI TCGA 4 cut(s) 58, 287, 327, 496
TasI AATT 7 cut(s) 142, 165, 228, 257, 330, 380, 442
TatI WGTACW 1 cut(s) 389
Tru1I TTAA 2 cut(s) 102, 434
Tru9I TTAA 2 cut(s) 102, 434
TscAI CASTG 2 cut(s) 240, 545
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 3 cut(s) 33, 36, 419
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 216, 435
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 2 cut(s) 240, 545
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 182
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 165, 257
XceI RCATGY 1 cut(s) 482
XspI CTAG 2 cut(s) 266, 317
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.