Rw2G007660

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004519
Physical Location & Seq
Reverse (-)
7485352 .. 7486237
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007660.1

Sequence Viewer

Length: 855 bp
ATGAATGTTTCGTTGAGAGAATTCAAGCTAGTTCCAAAACCAGAACAATCGATTATTTGGCATACAGGTTCTCTATCACGACAATTTGTCGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGGAACGTGAACGCCAGGCTGCAATATATCATGTAAGTTCTAATTCATGGAAAAAGCTTAGTGATCCTTTGCTTGACCATGTTACTCTAGATCTTCAAGATTGTATTACTGACACCAATGTCAACGGAAATGCTCACTGGTTGGCTTATGATGATGGCGTCCCTAGTGGCAGTGATTCGCATATTCTTTCTTTTGACATGGTTGGTGAAGTGTTTGCAAAGATAGAGCTTCCAGAATTGAGGATTACTTGTCGCGAAACTGCATATGTCGTTGCACTGTTTAATGAATCTCTTTCTCTTATTGTTTATCCAAAGACGCTAGTTTCTTTCTTGGAAGAAAGTGACACCAAATGTTTTGACATATGGGTTATGAAAGACTACGGTGATGACAGATCTTGGACTAAGCAATTCACGGTTGGACCAGTTGCATTTGTTGACATACTACTAGGTTTTTGGCGAAATGGCGAGTTTCTCATACAGGATGGTTCGGGGCGCACTATCACTTACGACCCAAGCGCCGGAAAGATGGAGCAGCTTTGTTTTGGTCAAGGGCTTCAATTGATCCGATCTTGTATCTACTCAGAGAGCCTAGTTTCAGTGACAGGGAATGCACGAAATGATTTTGAAATAGTAGTTGAAGACTTTCCCTTCGTCATGACTCCGGACATGAAGAGAGTGCTAGGATATATAGACAAATGTCCATGTCGTTCCTGTTCAACTTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

284

Amino Acids

32.19

Weight (kDa)

4.79

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 199 2.9e-08 F-box associated beta propeller domain
FBA_1 PF07734 26 - 207 1e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccII CGCG 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 787
AclWI GGATC 3 cut(s) 98, 185, 682
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 644
AgsI TTSAA 6 cut(s) 25, 224, 683, 752, 764, 843
AhdI GACNNNNNGTC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 4 cut(s) 28, 184, 355, 661
AluI AGCT 4 cut(s) 28, 184, 355, 661
AlwI GGATC 3 cut(s) 98, 185, 682
Aor13HI TCCGGA 1 cut(s) 787
ApeKI GCWGC 2 cut(s) 146, 658
ApoI RAATTY 1 cut(s) 20
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
Asp700I GAANNNNTTC 1 cut(s) 768
AspLEI GCGC 2 cut(s) 621, 644
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 2 cut(s) 344, 521
AvaII GGWCC 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 2 cut(s) 133, 670
BccI CCATC 3 cut(s) 275, 602, 646
BciT130I CCWGG 1 cut(s) 143
BfaI CTAG 7 cut(s) 29, 215, 291, 446, 572, 716, 806
BfoI RGCGCY 1 cut(s) 645
BglII AGATCT 2 cut(s) 217, 518
BisI GCNGC 2 cut(s) 147, 659
BlsI GCNGC 2 cut(s) 148, 660
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 545
BmeRI GACNNNNNGTC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 545
BmrFI CCNGG 1 cut(s) 143
BoxI GACNNNNGTC 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 771
Bsa29I ATCGAT 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 787
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse1I ACTGG 2 cut(s) 269, 548
BseAI TCCGGA 1 cut(s) 787
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 50
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 2 cut(s) 269, 548
BseXI GCAGC 2 cut(s) 133, 670
Bsh1236I CGCG 1 cut(s) 381
BshVI ATCGAT 1 cut(s) 50
BsiSI CCGG 2 cut(s) 645, 788
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 739
Bsp13I TCCGGA 1 cut(s) 787
Bsp143I GATC 6 cut(s) 103, 190, 217, 518, 687, 692
Bsp68I TCGCGA 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 719
BspDI ATCGAT 1 cut(s) 50
BspEI TCCGGA 1 cut(s) 787
BspFNI CGCG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 780
BspPI GGATC 3 cut(s) 98, 185, 682
BsrI ACTGG 2 cut(s) 269, 548
BssMI GATC 6 cut(s) 103, 190, 217, 518, 687, 692
BssNI GRCGYC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 3 cut(s) 405, 509, 541
Bst6I CTCTTC 1 cut(s) 791
BstACI GRCGYC 1 cut(s) 285
BstDEI CTNAG 3 cut(s) 185, 528, 706
BstF5I GGATG 1 cut(s) 613
BstFNI CGCG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 2 cut(s) 621, 644
BstKTI GATC 6 cut(s) 106, 193, 220, 521, 690, 695
BstMBI GATC 6 cut(s) 103, 190, 217, 518, 687, 692
BstNI CCWGG 1 cut(s) 143
BstPAI GACNNNNGTC 1 cut(s) 822
BstSCI CCNGG 1 cut(s) 141
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 133, 670
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 2 cut(s) 217, 518
BstYI RGATCY 2 cut(s) 217, 518
Bsu15I ATCGAT 1 cut(s) 50
BsuTUI ATCGAT 1 cut(s) 50
BtsCI GGATG 1 cut(s) 613
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 4 cut(s) 262, 304, 401, 729
BtuMI TCGCGA 1 cut(s) 381
CciI TCATGA 1 cut(s) 780
CfoI GCGC 2 cut(s) 621, 644
Cfr13I GGNCC 1 cut(s) 545
ClaI ATCGAT 1 cut(s) 50
CseI GACGC 2 cut(s) 274, 451
CviAII CATG 7 cut(s) 158, 174, 206, 325, 781, 793, 828
CviJI RGCY 8 cut(s) 28, 146, 184, 272, 355, 661, 679, 714
CviKI_1 RGCY 8 cut(s) 28, 146, 184, 272, 355, 661, 679, 714
DdeI CTNAG 3 cut(s) 185, 528, 706
DpnI GATC 6 cut(s) 105, 192, 219, 520, 689, 694
DpnII GATC 6 cut(s) 103, 190, 217, 518, 687, 692
DrdI GACNNNNNNGTC 1 cut(s) 245
DriI GACNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 791
Eam1105I GACNNNNNGTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 791
Eco47I GGWCC 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 7 cut(s) 161, 177, 209, 328, 784, 796, 831
FaqI GGGAC 1 cut(s) 272
FatI CATG 7 cut(s) 157, 173, 205, 324, 780, 792, 827
FauNDI CATATG 2 cut(s) 391, 488
Fnu4HI GCNGC 2 cut(s) 147, 659
FokI GGATG 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 147, 659
FspBI CTAG 7 cut(s) 29, 215, 291, 446, 572, 716, 806
GlaI GCGC 2 cut(s) 620, 643
GluI GCNGC 2 cut(s) 147, 659
HaeII RGCGCY 1 cut(s) 645
HapII CCGG 2 cut(s) 645, 788
HgaI GACGC 2 cut(s) 274, 451
HhaI GCGC 2 cut(s) 621, 644
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 7 cut(s) 161, 177, 209, 328, 784, 796, 831
Hin6I GCGC 2 cut(s) 619, 642
HinP1I GCGC 2 cut(s) 619, 642
HincII GTYRAC 2 cut(s) 250, 562
HindII GTYRAC 2 cut(s) 250, 562
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 3 cut(s) 302, 413, 784
HpaII CCGG 2 cut(s) 645, 788
HphI GGTGA 2 cut(s) 344, 521
Hpy166II GTNNAC 3 cut(s) 137, 250, 562
Hpy188I TCNGA 3 cut(s) 692, 709, 850
Hpy188III TCNNGA 7 cut(s) 78, 215, 224, 359, 380, 781, 788
Hpy8I GTNNAC 3 cut(s) 137, 250, 562
HpyAV CCTTC 1 cut(s) 784
HpyCH4III ACNGT 3 cut(s) 405, 509, 541
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 6 cut(s) 149, 344, 389, 401, 554, 737
HpyF3I CTNAG 3 cut(s) 185, 528, 706
HpySE526I ACGT 1 cut(s) 133
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 7 cut(s) 161, 177, 209, 328, 784, 796, 831
HspAI GCGC 2 cut(s) 619, 642
Kpn2I TCCGGA 1 cut(s) 787
Kzo9I GATC 6 cut(s) 103, 190, 217, 518, 687, 692
LmnI GCTCC 1 cut(s) 655
Lsp1109I GCAGC 2 cut(s) 133, 670
MaeI CTAG 7 cut(s) 29, 215, 291, 446, 572, 716, 806
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 3 cut(s) 208, 467, 724
MalI GATC 6 cut(s) 105, 192, 219, 520, 689, 694
MboI GATC 6 cut(s) 103, 190, 217, 518, 687, 692
MboII GAAGA 4 cut(s) 212, 473, 776, 808
MfeI CAATTG 1 cut(s) 683
MflI RGATCY 2 cut(s) 217, 518
MluCI AATT 7 cut(s) 20, 83, 93, 169, 362, 533, 683
MlyI GAGTC 1 cut(s) 778
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 1 cut(s) 360
MroI TCCGGA 1 cut(s) 787
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 1 cut(s) 408
MspI CCGG 2 cut(s) 645, 788
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 683
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 381
NdeI CATATG 2 cut(s) 391, 488
NdeII GATC 6 cut(s) 103, 190, 217, 518, 687, 692
NlaIII CATG 7 cut(s) 161, 177, 209, 328, 784, 796, 831
NmuCI GTSAC 2 cut(s) 467, 724
NruI TCGCGA 1 cut(s) 381
PagI TCATGA 1 cut(s) 780
PctI GAATGC 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 302, 413
PkrI GCNGC 2 cut(s) 148, 660
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
PshAI GACNNNNGTC 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspPI GGNCC 1 cut(s) 545
PsuI RGATCY 2 cut(s) 217, 518
RruI TCGCGA 1 cut(s) 381
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 2 cut(s) 147, 659
Sau3AI GATC 6 cut(s) 103, 190, 217, 518, 687, 692
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 778
ScrFI CCNGG 1 cut(s) 143
SetI ASST 8 cut(s) 30, 70, 129, 136, 186, 357, 577, 663
SinI GGWCC 1 cut(s) 545
Sse9I AATT 7 cut(s) 20, 83, 93, 169, 362, 533, 683
SspMI CTAG 7 cut(s) 29, 215, 291, 446, 572, 716, 806
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 405, 509, 541
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 50, 90
TasI AATT 7 cut(s) 20, 83, 93, 169, 362, 533, 683
TfiI GAWTC 2 cut(s) 302, 413
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 4 cut(s) 269, 304, 408, 729
TseFI GTSAC 2 cut(s) 467, 724
TseI GCWGC 2 cut(s) 146, 658
Tsp45I GTSAC 2 cut(s) 467, 724
TspDTI ATGAA 5 cut(s) 17, 162, 426, 512, 809
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 4 cut(s) 269, 304, 408, 729
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 1 cut(s) 20
XbaI TCTAGA 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 7 cut(s) 29, 215, 291, 446, 572, 716, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.