Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Forward (+)

8794120 .. 8795171

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTATTGTTTCTCTTGACTGGCTTAAGTTTTCAGATATTTCAGACCAAGGAAACAAGTTTCCGAATTATTGGTTTTTTTGCACTGGACTGGGTCGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGTTTTTTTTCAAGGAATTATGCAGTACTGATACCCAGGAAAGTGAACGTCAGGCTGCAATATATCATTTAAGTTCTAATTCATGGAAAAAGCTAAGTGCTCCTTTGCTTGAGCATTTTATTCTATATTTTCGAGATTGTAATATTACTGACACCTATGTCAACGGAAATGTTCACTGGTTGGGTTTTGAGGACTACCCTGGTCGCAGAGATTGGTGTATTCTTTCTTTTGACATGGTTAGTGAAGTGTTTGCAAAGATAAAGCTTCCAGACTTGAGTATTAGTTGGGACGAAACTGAATATCTCCTTGCAGTATTTAATGAATCTCTTTCTCTTATTCTTTATCCAAAGACGCCAGACTATCCCATGTTTACAGGTTACTTTAAATGTTTTGACATATGGGTTATGAATGACTATGGTAACGACAGATCTTGGACTAAGCTTTTCACAACTGGACCAGTTGCATCTGCTTACAGACTACTAGGGTTTTGGCGAAATGGCGACTTTCTTATACAACATGATTTTGGATACACCATCTCTTACGACCCAGGTACCCAAGAGATCGAGCCGCTTTGTTTTGGTGAAGGGCTTCATTTGAACCAATCTCGTATCTACTCAGAGAGCCTAGTTTCAGTGACGGGTAATGCACGAAATGATTTTGAAATAGTAGTTGAAGACTTTCCTTTCGTCATGACTCCAGACATGAAGAGAGTCCTAGACTACATAGATAAATGTCCATCTTGTTTCCGTTTAACTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

299

Amino Acids

34.79

Weight (kDa)

4.68

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	29 - 218	7.7e-20	F-box associated beta propeller domain
FBA_3	PF08268	34 - 196	2.1e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc65I	GGTACC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	683
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	2 cut(s)	160, 685
AflII	CTTAAG	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	145, 730, 794, 806
AjnI	CCWGG	3 cut(s)	168, 331, 679
AluBI	AGCT	3 cut(s)	226, 397, 574
AluI	AGCT	3 cut(s)	226, 397, 574
Alw21I	GWGCWC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
Asp700I	GAANNNNTTC	2 cut(s)	720, 810
Asp718I	GGTACC	1 cut(s)	683
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	587
BaeI	ACNNNNGTAYC	2 cut(s)	667, 700
BanI	GGYRCC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	674, 877
BciT130I	CCWGG	3 cut(s)	170, 333, 681
BciVI	GTATCC	1 cut(s)	653
BfaI	CTAG	3 cut(s)	614, 758, 848
BfrI	CTTAAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	2 cut(s)	189, 701
BlsI	GCNGC	2 cut(s)	190, 702
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	3 cut(s)	170, 333, 681
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	3 cut(s)	170, 333, 681
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	605
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	813
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	2 cut(s)	263, 427
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	48, 168, 331, 679
Bse1I	ACTGG	6 cut(s)	25, 90, 95, 314, 589, 590
BseBI	CCWGG	3 cut(s)	170, 333, 681
BseDI	CCNNGG	4 cut(s)	48, 168, 331, 679
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	6 cut(s)	25, 90, 95, 314, 589, 590
BseXI	GCAGC	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	109, 560, 693
BspACI	CCGC	1 cut(s)	701
BspCNI	CTCAG	1 cut(s)	761
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	683
BspTI	CTTAAG	1 cut(s)	25
BsrI	ACTGG	6 cut(s)	25, 90, 95, 314, 589, 590
BssECI	CCNNGG	4 cut(s)	48, 168, 331, 679
BssMI	GATC	3 cut(s)	109, 560, 693
BssNI	GRCGYC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	3 cut(s)	170, 333, 681
Bst6I	CTCTTC	1 cut(s)	833
BstACI	GRCGYC	1 cut(s)	485
BstAFI	CTTAAG	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	227, 570, 748
BstKTI	GATC	3 cut(s)	112, 563, 696
BstMBI	GATC	3 cut(s)	109, 560, 693
BstNI	CCWGG	3 cut(s)	170, 333, 681
BstSCI	CCNGG	3 cut(s)	168, 331, 679
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BsuI	GTATCC	1 cut(s)	653
BtsIMutI	CAGTG	3 cut(s)	83, 307, 771
CciI	TCATGA	1 cut(s)	822
Cfr13I	GGNCC	1 cut(s)	587
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	159, 684
CviAII	CATG	6 cut(s)	216, 367, 499, 650, 823, 835
CviJI	RGCY	8 cut(s)	24, 188, 226, 397, 574, 700, 721, 756
CviKI_1	RGCY	8 cut(s)	24, 188, 226, 397, 574, 700, 721, 756
CviQI	GTAC	2 cut(s)	159, 684
DdeI	CTNAG	3 cut(s)	227, 570, 748
DpnI	GATC	3 cut(s)	111, 562, 695
DpnII	GATC	3 cut(s)	109, 560, 693
DraI	TTTAAA	1 cut(s)	517
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	587
EcoRII	CCWGG	3 cut(s)	168, 331, 679
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	6 cut(s)	219, 370, 502, 653, 826, 838
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	6 cut(s)	215, 366, 498, 649, 822, 834
FauNDI	CATATG	1 cut(s)	530
Fnu4HI	GCNGC	2 cut(s)	189, 701
Fsp4HI	GCNGC	2 cut(s)	189, 701
FspBI	CTAG	3 cut(s)	614, 758, 848
GluI	GCNGC	2 cut(s)	189, 701
GsuI	CTGGAG	1 cut(s)	813
HgaI	GACGC	1 cut(s)	493
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	6 cut(s)	219, 370, 502, 653, 826, 838
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	2 cut(s)	395, 572
HinfI	GANTC	3 cut(s)	455, 826, 843
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	4 cut(s)	179, 295, 307, 504
Hpy188I	TCNGA	5 cut(s)	36, 45, 65, 751, 892
Hpy188III	TCNNGA	5 cut(s)	16, 266, 401, 823, 830
Hpy8I	GTNNAC	4 cut(s)	179, 295, 307, 504
HpyAV	CCTTC	1 cut(s)	710
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	7 cut(s)	83, 156, 191, 386, 443, 596, 779
HpyF3I	CTNAG	3 cut(s)	227, 570, 748
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	6 cut(s)	219, 370, 502, 653, 826, 838
KpnI	GGTACC	1 cut(s)	687
Kzo9I	GATC	3 cut(s)	109, 560, 693
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	605
MaeI	CTAG	3 cut(s)	614, 758, 848
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	509, 551, 766
MalI	GATC	3 cut(s)	111, 562, 695
MboI	GATC	3 cut(s)	109, 560, 693
MboII	GAAGA	2 cut(s)	818, 850
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	4 cut(s)	66, 99, 149, 211
MlyI	GAGTC	2 cut(s)	820, 852
MnlI	CCTC	1 cut(s)	316
MroXI	GAANNNNTTC	2 cut(s)	720, 810
MseI	TTAA	5 cut(s)	26, 203, 450, 516, 884
MspCI	CTTAAG	1 cut(s)	25
MspR9I	CCNGG	3 cut(s)	170, 333, 681
MvaI	CCWGG	3 cut(s)	170, 333, 681
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	3 cut(s)	109, 560, 693
NlaIII	CATG	6 cut(s)	219, 370, 502, 653, 826, 838
NlaIV	GGNNCC	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	766
PagI	TCATGA	1 cut(s)	822
PdmI	GAANNNNTTC	2 cut(s)	720, 810
PfeI	GAWTC	1 cut(s)	455
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	190, 702
PleI	GAGTC	2 cut(s)	820, 851
PpsI	GAGTC	2 cut(s)	820, 851
Psp6I	CCWGG	3 cut(s)	168, 331, 679
PspGI	CCWGG	3 cut(s)	168, 331, 679
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	560
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	2 cut(s)	160, 685
RsaNI	GTAC	2 cut(s)	159, 684
SaqAI	TTAA	5 cut(s)	26, 203, 450, 516, 884
SatI	GCNGC	2 cut(s)	189, 701
Sau3AI	GATC	3 cut(s)	109, 560, 693
Sau96I	GGNCC	1 cut(s)	587
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	2 cut(s)	820, 852
ScrFI	CCNGG	3 cut(s)	170, 333, 681
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	8 cut(s)	135, 184, 228, 290, 399, 511, 576, 685
SfaNI	GCATC	1 cut(s)	605
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	3 cut(s)	25, 242, 406
SmoI	CTYRAG	3 cut(s)	25, 242, 406
Sse9I	AATT	4 cut(s)	66, 99, 149, 211
SsiI	CCGC	1 cut(s)	701
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	3 cut(s)	614, 758, 848
StyD4I	CCNGG	3 cut(s)	168, 331, 679
StyI	CCWWGG	1 cut(s)	48
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	96, 265, 696
TasI	AATT	4 cut(s)	66, 99, 149, 211
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	5 cut(s)	26, 203, 450, 516, 884
Tru9I	TTAA	5 cut(s)	26, 203, 450, 516, 884
TscAI	CASTG	3 cut(s)	90, 314, 771
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	5 cut(s)	204, 468, 554, 713, 851
TspGWI	ACGGA	2 cut(s)	312, 869
TspRI	CASTG	3 cut(s)	90, 314, 771
Tth111I	GACNNNGTC	1 cut(s)	92
Vha464I	CTTAAG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	587
XmnI	GAANNNNTTC	2 cut(s)	720, 810
XspI	CTAG	3 cut(s)	614, 758, 848
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.