Rh2AG101000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004519
Physical Location & Seq
Reverse (-)
8606830 .. 8607213
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG101000.1

Sequence Viewer

Length: 384 bp
ATGCTCCCAAGAGGCCAAGATGTGTTGTGGGACATTCTTTGTAGATTGCGTGTTAAATCTTTGAAGAGATTCCAATGTGTGTGCAAATCTTGGTATGCTCTATTTATGCACCCAAGTTTTGTCACCAAACACCTCCACAAGAATACTCGTTCCTTCCTGCTTTCTCACTCCCTGGATCTCCGTTATATTAATGAGTTGCCCATTGATCAACGAAAAGACACTTGTTTCAGCTTGGTCAATTTAGACGAAACCACAGATGGTATTTTTTCTATCGACTGGCTTAAGCTTTTGGATAATTCAGACCAAGAAAACAAGTTTTCAAAATATTGGACTCTAAGATGTGATAATTTTTGGTCCACGCAATGGCATATATTGCCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

127

Amino Acids

15.31

Weight (kDa)

8.64

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 40 5.9e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 363
AclWI GGATC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 363
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 64, 321
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 231, 286
AluI AGCT 2 cut(s) 231, 286
AlwI GGATC 1 cut(s) 183
AoxI GGCC 1 cut(s) 13
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 354
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 173
BclI TGATCA 1 cut(s) 205
BfrI CTTAAG 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 368
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMI GCAATG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 281
BshFI GGCC 1 cut(s) 15
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 175, 205
BspANI GGCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 183
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 368
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 175, 205
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 335
BstKTI GATC 2 cut(s) 178, 208
BstMBI GATC 2 cut(s) 175, 205
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 354
CviAII CATG 1 cut(s) 381
CviJI RGCY 4 cut(s) 15, 231, 280, 286
CviKI_1 RGCY 4 cut(s) 15, 231, 280, 286
DdeI CTNAG 1 cut(s) 335
DpnI GATC 2 cut(s) 177, 207
DpnII GATC 2 cut(s) 175, 205
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 384
FaiI YATR 6 cut(s) 96, 107, 186, 369, 371, 382
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 380
FbaI TGATCA 1 cut(s) 205
HaeIII GGCC 1 cut(s) 15
Hin1II CATG 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 2 cut(s) 69, 331
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 357
HpyAV CCTTC 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 84, 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 175, 205
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 158, 170, 185, 262
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 177, 207
MboI GATC 2 cut(s) 175, 205
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 175
MluCI AATT 3 cut(s) 238, 295, 346
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 2 cut(s) 5, 143
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 3 cut(s) 54, 189, 282
MspCI CTTAAG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 2 cut(s) 175, 205
NlaIII CATG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 69
PflMI CCANNNNNTGG 1 cut(s) 363
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 175
SaqAI TTAA 3 cut(s) 54, 189, 282
Sau3AI GATC 2 cut(s) 175, 205
Sau96I GGNCC 1 cut(s) 354
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 173
SetI ASST 3 cut(s) 135, 233, 288
SinI GGWCC 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 238, 295, 346
SspI AATATT 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 171
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 238, 295, 346
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 3 cut(s) 54, 189, 282
Tru9I TTAA 3 cut(s) 54, 189, 282
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 363
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 354
VspI ATTAAT 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.