Rh2CG105000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004519
Physical Location & Seq
Reverse (-)
9062136 .. 9062522
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG105000.1

Sequence Viewer

Length: 387 bp
ATGAATGTTTCGTTGAGAGAATTCAAGCTAGTTCCAAAACCAGAACAATCGATTATTTGGCATTCAGGTTCTCTATCACGACAAGTTGTAGAAATTGGTTTTGATCCTAAAACCAACGATTACAAGGTGTGGTTTTTTTTCAAGGATTGCACTTTTCCCAGGGAACGTGAACGCCAGGCTGCAATATATCATGTAAGTTCTAATTCATGGAAAAAGCTTAGTGATCCCTTGCTTGACCATGTTACTCTATATCTTCAAGATTGTATTACTGACACCAATGTCAGCGGAAATGCTCACTGGTTGGCTTTTGATGATGGCGTCCCAGGTGGCAGTGATTGGCATATTCTTTCTTTTGACATGGTTGGTGAAGTGTTTGCAAAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

128

Amino Acids

14.75

Weight (kDa)

5.65

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 21 - 127 1.1e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 98, 218
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 318
AgsI TTSAA 3 cut(s) 25, 142, 257
AjnI CCWGG 3 cut(s) 158, 174, 322
AluBI AGCT 2 cut(s) 28, 217
AluI AGCT 2 cut(s) 28, 217
AlwI GGATC 2 cut(s) 98, 218
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 377
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 3 cut(s) 160, 176, 324
BfaI CTAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 3 cut(s) 160, 176, 324
BmrFI CCNGG 3 cut(s) 160, 176, 324
Bsa29I ATCGAT 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 158, 159, 322
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 3 cut(s) 160, 176, 324
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 3 cut(s) 158, 159, 322
BseNI ACTGG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 50
BslFI GGGAC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 103, 223
BspACI CCGC 1 cut(s) 285
BspDI ATCGAT 1 cut(s) 50
BspPI GGATC 2 cut(s) 98, 218
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 158, 159, 322
BssMI GATC 2 cut(s) 103, 223
BssNI GRCGYC 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 160, 176, 324
BstACI GRCGYC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 2 cut(s) 106, 226
BstMBI GATC 2 cut(s) 103, 223
BstNI CCWGG 3 cut(s) 160, 176, 324
BstSCI CCNGG 3 cut(s) 158, 174, 322
BstV1I GCAGC 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 50
BsuTUI ATCGAT 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 295, 337
ClaI ATCGAT 1 cut(s) 50
CseI GACGC 1 cut(s) 307
CviAII CATG 4 cut(s) 191, 207, 239, 358
CviJI RGCY 4 cut(s) 28, 179, 217, 305
CviKI_1 RGCY 4 cut(s) 28, 179, 217, 305
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 105, 225
DpnII GATC 2 cut(s) 103, 223
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 158, 174, 322
FaeI CATG 4 cut(s) 194, 210, 242, 361
FaiI YATR 8 cut(s) 187, 192, 208, 240, 250, 342, 359, 385
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 190, 206, 238, 357
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 180
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 4 cut(s) 194, 210, 242, 361
HindIII AAGCTT 1 cut(s) 215
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 78, 257
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 150, 182, 377
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 166
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 4 cut(s) 194, 210, 242, 361
Kzo9I GATC 2 cut(s) 103, 223
LpnPI CCDG 9 cut(s) 51, 54, 145, 161, 172, 188, 283, 309, 336
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 105, 225
MboI GATC 2 cut(s) 103, 223
MboII GAAGA 1 cut(s) 245
MluCI AATT 3 cut(s) 20, 93, 202
MspA1I CMGCKG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 160, 176, 324
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 3 cut(s) 160, 176, 324
NdeII GATC 2 cut(s) 103, 223
NlaIII CATG 4 cut(s) 194, 210, 242, 361
PasI CCCWGGG 1 cut(s) 159
PctI GAATGC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 3 cut(s) 158, 174, 322
PspGI CCWGG 3 cut(s) 158, 174, 322
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 103, 223
ScrFI CCNGG 3 cut(s) 160, 176, 324
SetI ASST 6 cut(s) 30, 70, 129, 169, 219, 328
Sse9I AATT 3 cut(s) 20, 93, 202
SsiI CCGC 1 cut(s) 285
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 158, 174, 322
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 20, 93, 202
TscAI CASTG 2 cut(s) 302, 337
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 17, 195
TspRI CASTG 2 cut(s) 302, 337
XapI RAATTY 1 cut(s) 20
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.