Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001309.1

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Forward (+)

33532 .. 34743

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001309.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgcacccaagttttgtcaccaaacacctccactttcacagcggacagaagaagaatactcgttccttcctgctttctcactccctggatctccgttatattaatgagttgcccattgatcaacgaaaagacacttgtttcagcttggtcaatttagacgaaaccacagatgatattgtttctatcgactggcttaagctttcggataattcagaccaagaaaacaagttttcaaattattggactaaagatgtgataatttttggtccacgcaatggcatatattgcctccatgaatcatctagagatcacggcgatgtaattgggctgatgaatgtttcgttgagagaattcaagctagttccaaaaccagaacaatcgattatttggcatacaggttctctatcacgacaatttgtcgaaattggttttgatcctaaaaccaacgattacatggtgtttttttttaaggattgcacttttcccagggaacgtgaacgccaggctgcaatatatcatgtaagttctaattcatggaaaaagcttagtgatcctttgcttgaccatgttactctagatcttcaagattgtattactgacaccaatgtcaacggaaatgctcactggttggcttatgatgatggcgtccctagtggcagtgatcatattctttcttttgacatggttggtgaagtgtttgcaaagatagagcttccagaattgaggattactagtcgcgaaactgcatatgtcgttgcactgtttaatgaatctctttctcttattgtttatccaaagacgctagtttctttcttggaagaaagtgacaccaaatgttttgacatatgggttatgaaagactacggtgatgacagatcttggactaagcaattcacagttggaccagttgcatttgctgacatactactaggtttttggcgaaatggcgagtttctcatacaagatggttcggggcgcactatcacttacgacccaagggccggaaagatggagcagctttgttttggtcaagggcttcaattgatccgatcttgtatctactcagagagcctagtttcagtgacagggaatgcacgaaatgattttgaaatagtagttgaagactttcccttcgtcatgactccagacatgaagagagtgctaggatatatagacaaatgtccatgtcgttcctgttcaacttctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

403

Amino Acids

46.21

Weight (kDa)

5.14

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccII	CGCG	1 cut(s)	738
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	4 cut(s)	96, 428, 545, 1039
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	645
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1001
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	7 cut(s)	234, 355, 584, 1040, 1109, 1121, 1200
AhdI	GACNNNNNGTC	1 cut(s)	416
AhlI	ACTAGT	1 cut(s)	731
AjnI	CCWGG	3 cut(s)	84, 485, 501
AluBI	AGCT	6 cut(s)	144, 199, 358, 544, 712, 1018
AluI	AGCT	6 cut(s)	144, 199, 358, 544, 712, 1018
AlwI	GGATC	4 cut(s)	96, 428, 545, 1039
AoxI	GGCC	1 cut(s)	999
ApeKI	GCWGC	2 cut(s)	506, 1015
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	1115, 1147
AseI	ATTAAT	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	1125
AspLEI	GCGC	1 cut(s)	978
AspS9I	GGNCC	3 cut(s)	266, 902, 999
AsuHPI	GGTGA	3 cut(s)	10, 701, 878
AvaII	GGWCC	2 cut(s)	266, 902
BbsI	GAAGAC	1 cut(s)	1128
BbvI	GCAGC	2 cut(s)	493, 1027
BccI	CCATC	3 cut(s)	635, 959, 1003
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	3 cut(s)	86, 487, 503
BclI	TGATCA	2 cut(s)	118, 661
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	9 cut(s)	303, 359, 575, 651, 732, 803, 929, 1073, 1163
BfrI	CTTAAG	1 cut(s)	194
BglII	AGATCT	2 cut(s)	577, 875
BisI	GCNGC	2 cut(s)	507, 1016
BlsI	GCNGC	2 cut(s)	508, 1017
Bme1390I	CCNGG	3 cut(s)	86, 487, 503
Bme18I	GGWCC	2 cut(s)	266, 902
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	266, 902, 999
BmrFI	CCNGG	3 cut(s)	86, 487, 503
BoxI	GACNNNNGTC	1 cut(s)	1179
BpiI	GAAGAC	1 cut(s)	1128
BpmI	CTGGAG	1 cut(s)	1128
Bsa29I	ATCGAT	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	645
BsaJI	CCNNGG	4 cut(s)	84, 485, 486, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1001
Bse1I	ACTGG	3 cut(s)	194, 629, 905
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	3 cut(s)	86, 487, 503
BseCI	ATCGAT	1 cut(s)	380
BseDI	CCNNGG	4 cut(s)	84, 485, 486, 995
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1001
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	1077
BseNI	ACTGG	3 cut(s)	194, 629, 905
BseXI	GCAGC	2 cut(s)	493, 1027
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	1 cut(s)	1001
BshVI	ATCGAT	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	1002
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	2 cut(s)	275, 1001
BsmFI	GGGAC	1 cut(s)	632
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	1 cut(s)	1001
Bsp68I	TCGCGA	1 cut(s)	738
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	1001
BspCNI	CTCAG	1 cut(s)	1076
BspDI	ATCGAT	1 cut(s)	380
BspFNI	CGCG	1 cut(s)	738
BspHI	TCATGA	1 cut(s)	1137
BspPI	GGATC	4 cut(s)	96, 428, 545, 1039
BspTI	CTTAAG	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	3 cut(s)	194, 629, 905
BssECI	CCNNGG	4 cut(s)	84, 485, 486, 995
BssNI	GRCGYC	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	995
Bst2UI	CCWGG	3 cut(s)	86, 487, 503
Bst4CI	ACNGT	3 cut(s)	762, 866, 898
Bst6I	CTCTTC	1 cut(s)	1148
BstACI	GRCGYC	1 cut(s)	645
BstAFI	CTTAAG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstDEI	CTNAG	3 cut(s)	545, 885, 1063
BstFNI	CGCG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	978
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNI	CCWGG	3 cut(s)	86, 487, 503
BstPAI	GACNNNNGTC	1 cut(s)	1179
BstSCI	CCNGG	3 cut(s)	84, 485, 501
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	493, 1027
BstV2I	GAAGAC	1 cut(s)	1128
BstX2I	RGATCY	3 cut(s)	88, 577, 875
BstYI	RGATCY	3 cut(s)	88, 577, 875
Bsu15I	ATCGAT	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	1001
BsuTUI	ATCGAT	1 cut(s)	380
BtgZI	GCGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	4 cut(s)	622, 664, 758, 1086
BtuMI	TCGCGA	1 cut(s)	738
CciI	TCATGA	1 cut(s)	1137
CfoI	GCGC	1 cut(s)	978
Cfr13I	GGNCC	3 cut(s)	266, 902, 999
ClaI	ATCGAT	1 cut(s)	380
CseI	GACGC	2 cut(s)	634, 808
CviAII	CATG	9 cut(s)	293, 454, 518, 534, 566, 682, 1138, 1150, 1185
DdeI	CTNAG	3 cut(s)	545, 885, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	605
DriI	GACNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	605
Eam1104I	CTCTTC	1 cut(s)	1148
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	1148
Eco130I	CCWWGG	1 cut(s)	995
Eco47I	GGWCC	2 cut(s)	266, 902
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	84, 485, 501
EcoT14I	CCWWGG	1 cut(s)	995
ErhI	CCWWGG	1 cut(s)	995
FaeI	CATG	9 cut(s)	296, 457, 521, 537, 569, 685, 1141, 1153, 1188
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	9 cut(s)	292, 453, 517, 533, 565, 681, 1137, 1149, 1184
FauNDI	CATATG	2 cut(s)	748, 845
FbaI	TGATCA	2 cut(s)	118, 661
Fnu4HI	GCNGC	2 cut(s)	507, 1016
Fsp4HI	GCNGC	2 cut(s)	507, 1016
FspBI	CTAG	9 cut(s)	303, 359, 575, 651, 732, 803, 929, 1073, 1163
GlaI	GCGC	1 cut(s)	977
GluI	GCNGC	2 cut(s)	507, 1016
GsuI	CTGGAG	1 cut(s)	1128
HaeIII	GGCC	1 cut(s)	1001
HapII	CCGG	1 cut(s)	1002
HgaI	GACGC	2 cut(s)	634, 808
HhaI	GCGC	1 cut(s)	978
Hin1I	GRCGYC	1 cut(s)	645
Hin1II	CATG	9 cut(s)	296, 457, 521, 537, 569, 685, 1141, 1153, 1188
Hin6I	GCGC	1 cut(s)	976
HinP1I	GCGC	1 cut(s)	976
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	2 cut(s)	197, 542
HinfI	GANTC	3 cut(s)	296, 770, 1141
HpaII	CCGG	1 cut(s)	1002
HphI	GGTGA	3 cut(s)	10, 701, 878
Hpy166II	GTNNAC	3 cut(s)	269, 497, 610
Hpy188I	TCNGA	5 cut(s)	205, 214, 1049, 1066, 1207
Hpy188III	TCNNGA	8 cut(s)	303, 408, 575, 584, 716, 737, 1138, 1145
Hpy8I	GTNNAC	3 cut(s)	269, 497, 610
HpyAV	CCTTC	2 cut(s)	76, 1141
HpyCH4III	ACNGT	3 cut(s)	762, 866, 898
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	8 cut(s)	4, 477, 509, 701, 746, 758, 911, 1094
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	3 cut(s)	545, 885, 1063
HpySE526I	ACGT	1 cut(s)	493
Hsp92I	GRCGYC	1 cut(s)	645
Hsp92II	CATG	9 cut(s)	296, 457, 521, 537, 569, 685, 1141, 1153, 1188
HspAI	GCGC	1 cut(s)	976
Ksp22I	TGATCA	2 cut(s)	118, 661
LmnI	GCTCC	1 cut(s)	1012
Lsp1109I	GCAGC	2 cut(s)	493, 1027
MaeI	CTAG	9 cut(s)	303, 359, 575, 651, 732, 803, 929, 1073, 1163
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	4 cut(s)	16, 568, 824, 1081
MboII	GAAGA	6 cut(s)	61, 64, 572, 830, 1133, 1165
MfeI	CAATTG	1 cut(s)	1040
MflI	RGATCY	3 cut(s)	88, 577, 875
MlyI	GAGTC	1 cut(s)	1135
MmeI	TCCRAC	1 cut(s)	880
MnlI	CCTC	3 cut(s)	38, 299, 717
MroXI	GAANNNNTTC	1 cut(s)	1125
MseI	TTAA	4 cut(s)	102, 195, 468, 765
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	42
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	1002
MspR9I	CCNGG	3 cut(s)	86, 487, 503
MunI	CAATTG	1 cut(s)	1040
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	3 cut(s)	86, 487, 503
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeI	CATATG	2 cut(s)	748, 845
NlaIII	CATG	9 cut(s)	296, 457, 521, 537, 569, 685, 1141, 1153, 1188
NmuCI	GTSAC	3 cut(s)	16, 824, 1081
NruI	TCGCGA	1 cut(s)	738
PagI	TCATGA	1 cut(s)	1137
PasI	CCCWGGG	1 cut(s)	486
PctI	GAATGC	1 cut(s)	1096
PdmI	GAANNNNTTC	1 cut(s)	1125
PfeI	GAWTC	2 cut(s)	296, 770
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	508, 1017
PleI	GAGTC	1 cut(s)	1135
PpsI	GAGTC	1 cut(s)	1135
PshAI	GACNNNNGTC	1 cut(s)	1179
PshBI	ATTAAT	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	84, 485, 501
PspGI	CCWGG	3 cut(s)	84, 485, 501
PspPI	GGNCC	3 cut(s)	266, 902, 999
PsuI	RGATCY	3 cut(s)	88, 577, 875
RruI	TCGCGA	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	102, 195, 468, 765
SatI	GCNGC	2 cut(s)	507, 1016
Sau96I	GGNCC	3 cut(s)	266, 902, 999
SchI	GAGTC	1 cut(s)	1135
ScrFI	CCNGG	3 cut(s)	86, 487, 503
SinI	GGWCC	2 cut(s)	266, 902
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	731
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	9 cut(s)	303, 359, 575, 651, 732, 803, 929, 1073, 1163
StyD4I	CCNGG	3 cut(s)	84, 485, 501
StyI	CCWWGG	1 cut(s)	995
TaaI	ACNGT	3 cut(s)	762, 866, 898
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	186, 380, 420
TfiI	GAWTC	2 cut(s)	296, 770
Tru1I	TTAA	4 cut(s)	102, 195, 468, 765
Tru9I	TTAA	4 cut(s)	102, 195, 468, 765
TscAI	CASTG	4 cut(s)	629, 664, 765, 1086
TseFI	GTSAC	3 cut(s)	16, 824, 1081
TseI	GCWGC	2 cut(s)	506, 1015
Tsp45I	GTSAC	3 cut(s)	16, 824, 1081
TspDTI	ATGAA	6 cut(s)	309, 347, 522, 783, 869, 1166
TspGWI	ACGGA	2 cut(s)	83, 627
TspRI	CASTG	4 cut(s)	629, 664, 765, 1086
Van91I	CCANNNNNTGG	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	266, 902
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	2 cut(s)	302, 574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	1125
XspI	CTAG	9 cut(s)	303, 359, 575, 651, 732, 803, 929, 1073, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.