Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Reverse (-)

8497893 .. 8498225

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG102700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGAGAACATGCTCCCAAAATGTGTTGTGGGACGTTCTTTGTAGTTGCGTGTTTGAAGAGATTCCAATGTGTGTGCAAATCTTGGTATGCTCTATTTATGCACCCAAGTTACATCTCCACTTTCACAGCAGACAGAACAAGAATACTCGTTCCTTCCTGCTTTCTCACTCCCTGGATCTCCGTTATATTAATGAGTTGCCCATTGATCAACGAAAAGACACTTATTTCAGCTTGGTCAATTTAGACGAAACCACAGATGATATTGTTTCTATCGACTGGCTTAAGCTTTCGGATAATTCAGACCAAGAAAACAAGTTTTCAAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

110

Amino Acids

12.93

Weight (kDa)

5.16

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	59, 324
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	234, 289
AluI	AGCT	2 cut(s)	234, 289
AlwI	GGATC	1 cut(s)	186
AseI	ATTAAT	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	176
BclI	TGATCA	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	178, 208
BspPI	GGATC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	178, 208
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	284
BstKTI	GATC	2 cut(s)	181, 211
BstMBI	GATC	2 cut(s)	178, 208
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	3 cut(s)	234, 283, 289
CviKI_1	RGCY	3 cut(s)	234, 283, 289
DpnI	GATC	2 cut(s)	180, 210
DpnII	GATC	2 cut(s)	178, 208
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	15
FaiI	YATR	4 cut(s)	13, 91, 102, 189
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	11
FbaI	TGATCA	1 cut(s)	208
Hin1II	CATG	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	295, 304
HpyAV	CCTTC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	79, 104
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	178, 208
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	161, 173, 188, 265
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	2 cut(s)	180, 210
MboI	GATC	2 cut(s)	178, 208
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	3 cut(s)	241, 298, 325
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	2 cut(s)	192, 285
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	178, 208
NlaIII	CATG	1 cut(s)	15
NspI	RCATGY	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	192, 285
Sau3AI	GATC	2 cut(s)	178, 208
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	3 cut(s)	39, 236, 291
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	3 cut(s)	241, 298, 325
StyD4I	CCNGG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	241, 298, 325
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	192, 285
Tru9I	TTAA	2 cut(s)	192, 285
TspGWI	ACGGA	1 cut(s)	173
Vha464I	CTTAAG	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	192
XceI	RCATGY	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.