RLG00000021169

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004519
Physical Location & Seq
Forward (+)
72554416 .. 72555114
699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021169

Sequence Viewer

Length: 447 bp
ATGCGGCTCCGATATTATCACTACAAGGACCAGTATTCAAATGTGGACATTTTGGGCCCACGCAGTGGCATATATTGCCTACTTGATGGCAATCAAATCACATTGATGAATGCTTCAACGAGAGAATTCAAGGTTGCTCCACAAGAATATGTTGTCCATCTTACTGGTCCTCGGTTTGTCGAAATTGGTTTCGATCCAACAACCAACGATTACAACGTAGTTTTAGTTAGGAATTGGTCTGAAAGCGCTAAGCAAGCTGCGGTATATAGCTTGAGTTCTAATTCGTGGAAAAATGCAACTCTTACATGGCTGACTTATGTTCGTATTCACCCACGGCCTTCGATTGACGCCTATATCAAAGAAAACGTTCACTGGTTGGCTTCGAGAAAGGATGGGAGCGGCAATGCTTTCATTCTTGCCTTTGATAGGGAAGGACTTGGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

149

Amino Acids

16.98

Weight (kDa)

8.99

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 13 - 142 6.4e-08 F-box associated beta propeller domain
FBA_1 PF07734 26 - 142 6e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 399
AciI CCGC 3 cut(s) 4, 260, 399
AclI AACGTT 1 cut(s) 366
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 65
AfeI AGCGCT 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 65, 426
AgsI TTSAA 3 cut(s) 39, 117, 130
AluBI AGCT 2 cut(s) 257, 270
AluI AGCT 2 cut(s) 257, 270
AlwI GGATC 1 cut(s) 188
Aor51HI AGCGCT 1 cut(s) 247
AoxI GGCC 2 cut(s) 55, 335
ApaI GGGCCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 4 cut(s) 28, 55, 56, 167
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 2 cut(s) 28, 167
BaeGI GKGCMC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 244
BccI CCATC 3 cut(s) 80, 165, 386
BceAI ACGGC 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 249
BisI GCNGC 3 cut(s) 5, 258, 400
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 3 cut(s) 6, 259, 401
Bme18I GGWCC 2 cut(s) 28, 167
BmgT120I GGNCC 4 cut(s) 28, 55, 56, 167
BmiI GGNNCC 2 cut(s) 8, 57
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 170, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 426
Bse1I ACTGG 3 cut(s) 31, 169, 377
Bse3DI GCAATG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 170, 332
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 65, 426
BseMI GCAATG 1 cut(s) 409
BseNI ACTGG 3 cut(s) 31, 169, 377
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 2 cut(s) 57, 337
BslI CCNNNNNNNGG 2 cut(s) 65, 426
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 2 cut(s) 57, 337
Bsp120I GGGCCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 193
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 3 cut(s) 4, 260, 399
BspANI GGCC 2 cut(s) 57, 337
BspLI GGNNCC 2 cut(s) 8, 57
BspPI GGATC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 3 cut(s) 31, 169, 377
BssECI CCNNGG 2 cut(s) 170, 332
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 332
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 1 cut(s) 397
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 75, 254
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 164
BsuRI GGCC 2 cut(s) 57, 337
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 70, 370
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 4 cut(s) 28, 55, 56, 167
CseI GACGC 1 cut(s) 356
CviAII CATG 1 cut(s) 306
CviJI RGCY 7 cut(s) 7, 57, 257, 270, 310, 337, 380
CviKI_1 RGCY 7 cut(s) 7, 57, 257, 270, 310, 337, 380
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraIII CACNNNGTG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 28, 167
Eco47III AGCGCT 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 309
FaiI YATR 8 cut(s) 71, 73, 150, 265, 267, 307, 318, 354
FatI CATG 1 cut(s) 305
Fnu4HI GCNGC 3 cut(s) 5, 258, 400
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 5, 258, 400
GlaI GCGC 1 cut(s) 247
GluI GCNGC 3 cut(s) 5, 258, 400
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 2 cut(s) 57, 337
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 1 cut(s) 309
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 46, 370
Hpy188I TCNGA 2 cut(s) 11, 241
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 2 cut(s) 46, 370
HpyAV CCTTC 2 cut(s) 348, 425
HpyCH4IV ACGT 2 cut(s) 216, 366
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 254
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 2 cut(s) 216, 366
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 1 cut(s) 309
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 3 cut(s) 12, 142, 396
LpnPI CCDG 3 cut(s) 44, 150, 358
Lsp1109I GCAGC 1 cut(s) 244
MaeII ACGT 2 cut(s) 216, 366
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 399
MboI GATC 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 4 cut(s) 125, 183, 232, 280
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 75, 254
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 2 cut(s) 8, 57
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 3 cut(s) 6, 259, 401
Psp1406I AACGTT 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 8, 57
PspOMI GGGCCC 1 cut(s) 55
PspPI GGNCC 4 cut(s) 28, 55, 56, 167
RseI CAYNNNNRTG 1 cut(s) 104
SatI GCNGC 3 cut(s) 5, 258, 400
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 4 cut(s) 28, 55, 56, 167
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 135, 219, 259, 272, 369
SinI GGWCC 2 cut(s) 28, 167
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 4 cut(s) 125, 183, 232, 280
SsiI CCGC 3 cut(s) 4, 260, 399
TaiI ACGT 2 cut(s) 219, 369
TaqI TCGA 4 cut(s) 180, 192, 341, 383
TasI AATT 4 cut(s) 125, 183, 232, 280
TauI GCSGC 2 cut(s) 7, 402
TscAI CASTG 2 cut(s) 70, 377
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 122, 400
TspRI CASTG 2 cut(s) 70, 377
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 28, 167
XagI CCTNNNNNAGG 1 cut(s) 424
XapI RAATTY 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.