Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Reverse (-)

8653007 .. 8654329

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCGAGAACATGCTCCCAAGATGTGTTGTGGGACATTCTTTGTAGATTGCGTGTCAAATCTTTGAAGAGATTCCAATGTGTGTGCAAATCTTGGTATGCTCTATTTATGCACCCAAGTTTTGTCACCAAACACCTCCACTTTCACAGCGGACAGAAGAAGAATACTCGTTCCTTCCTGCTTTCTCACTCCCTGGATCTCCGTTATATTAATGAGTTGCCCATTGATCAACGAAAAGACACTTGTTTCAGCTTGGTCAATTTAGACGAAACCACAGATGATATTGTTTCTATCGACTGGCTTAAGCTTTCGGATAATTCAGACCAAGAAAACAAGTTTTCAAATTATTGGACTAAAGATGTGATAATTTTTGGTCCACGCAATGGCATATATTGCCTCCATGAATCATCTAGAGTTCACGGCGATGTAATTGGGCTGATGAATGTTTCGTTGAGAGAATTCAAGCTAGTTCCAAAACCAGAACAATCGATTATTTGGCATACAGGTTCTCTATCACGACAATTTGTCGAAATTGGTTTTGATCCTAAAACCAACGATTACATGGTGTTTTTTTTTAAGGATTGCACTTTTCCCAGGGAACGTGAACGCCAGGCTGCAATATATCATGTAAGTTCTAATTCATGGAAAAAGCTTAGTGATCCTTTGCTTGACCATGTTACTCTAGATCTTCAAGATTGTATTACTGACACCAATGTCAACGGAAATGCTCACTGGTTGGCTTATGATGATGGCGTCCCTAGTGGCAGTGATTGGCATATTCTTTCTTTTGACATGGTTGGTGAAGTGTTTGCAAAGATAGAGCTTCCAGAATTGAGGATTACTAGTCGCGAAACTGCATATGTCGTTGCACTGTTTAATGAATCTCTTTCTCTTATTGTTTATCCAAAGACGCTAGTTTCTTTCTTGGAAGAAAGTGACACCAAATGTTTTGACATATGGGTTATGAAAGACTACGGTGATGACAGATCTTGGACTAAGCAATTCACAGTTGGACCAGTTGCATTTGCTGACATACTACTAGGTTTTTGGCGAAATGGCGAGTTTCTCATACAAGATGGTTCGGGGCGCACTATCACTTACGACCCAAGCGCCGGAAAGATGGAGCAGCTTTGTTTTGGTCAAGGGCTTCAATTGATCCGATCTTGTATCTACTCAGAGAGCCTAGTTTCAGTGACAGGGAATGCACGAAATGATTTTGAAATAGTAGTTGAAGACTTTCCCTTCGTCATGACTCCAGACATGAAGAGAGTGCTAGGATATATAGACAAATGTCCATGTCGTTCCTGTTCAACTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

440

Amino Acids

50.66

Weight (kDa)

5.51

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	110 - 355	2.1e-11	F-box associated beta propeller domain
FBA_1	PF07734	146 - 363	2.1e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	713
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccII	CGCG	1 cut(s)	849
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	4 cut(s)	204, 536, 653, 1150
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	753
AfiI	CCNNNNNNNGG	2 cut(s)	383, 1112
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	8 cut(s)	67, 342, 463, 692, 1151, 1220, 1232, 1311
AhdI	GACNNNNNGTC	1 cut(s)	524
AhlI	ACTAGT	1 cut(s)	842
AjnI	CCWGG	3 cut(s)	192, 593, 609
AluBI	AGCT	6 cut(s)	252, 307, 466, 652, 823, 1129
AluI	AGCT	6 cut(s)	252, 307, 466, 652, 823, 1129
AlwI	GGATC	4 cut(s)	204, 536, 653, 1150
ApeKI	GCWGC	2 cut(s)	614, 1126
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	2 cut(s)	1226, 1258
AseI	ATTAAT	1 cut(s)	210
Asp700I	GAANNNNTTC	2 cut(s)	71, 1236
AspLEI	GCGC	2 cut(s)	1089, 1112
AspS9I	GGNCC	2 cut(s)	374, 1013
AsuHPI	GGTGA	3 cut(s)	118, 812, 989
AvaII	GGWCC	2 cut(s)	374, 1013
BbsI	GAAGAC	1 cut(s)	1239
BbvI	GCAGC	2 cut(s)	601, 1138
BccI	CCATC	3 cut(s)	743, 1070, 1114
BceAI	ACGGC	1 cut(s)	436
BciT130I	CCWGG	3 cut(s)	194, 595, 611
BclI	TGATCA	1 cut(s)	226
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	9 cut(s)	411, 467, 683, 759, 843, 914, 1040, 1184, 1274
BfoI	RGCGCY	1 cut(s)	1113
BfrI	CTTAAG	1 cut(s)	302
BglII	AGATCT	2 cut(s)	685, 986
BisI	GCNGC	2 cut(s)	615, 1127
BlsI	GCNGC	2 cut(s)	616, 1128
Bme1390I	CCNGG	3 cut(s)	194, 595, 611
Bme18I	GGWCC	2 cut(s)	374, 1013
BmeRI	GACNNNNNGTC	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	374, 1013
BmrFI	CCNGG	3 cut(s)	194, 595, 611
BoxI	GACNNNNGTC	1 cut(s)	1290
BpiI	GAAGAC	1 cut(s)	1239
BpmI	CTGGAG	1 cut(s)	1239
Bsa29I	ATCGAT	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	192, 593, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 1112
Bse1I	ACTGG	3 cut(s)	302, 737, 1016
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	3 cut(s)	194, 595, 611
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	3 cut(s)	192, 593, 594
BseLI	CCNNNNNNNGG	2 cut(s)	383, 1112
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	1188
BseNI	ACTGG	3 cut(s)	302, 737, 1016
BseXI	GCAGC	2 cut(s)	601, 1138
Bsh1236I	CGCG	1 cut(s)	849
BshVI	ATCGAT	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	1113
BslFI	GGGAC	2 cut(s)	47, 740
BslI	CCNNNNNNNGG	2 cut(s)	383, 1112
BsmFI	GGGAC	2 cut(s)	47, 740
BsmI	GAATGC	1 cut(s)	1207
Bsp143I	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
Bsp68I	TCGCGA	1 cut(s)	849
BspACI	CCGC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	1187
BspDI	ATCGAT	1 cut(s)	488
BspFNI	CGCG	1 cut(s)	849
BspHI	TCATGA	1 cut(s)	1248
BspPI	GGATC	4 cut(s)	204, 536, 653, 1150
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	3 cut(s)	302, 737, 1016
BssECI	CCNNGG	3 cut(s)	192, 593, 594
BssMI	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
BssNI	GRCGYC	1 cut(s)	753
Bst2UI	CCWGG	3 cut(s)	194, 595, 611
Bst4CI	ACNGT	3 cut(s)	873, 977, 1009
Bst6I	CTCTTC	2 cut(s)	62, 1259
BstACI	GRCGYC	1 cut(s)	753
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	653, 996, 1174
BstFNI	CGCG	1 cut(s)	849
BstH2I	RGCGCY	1 cut(s)	1113
BstHHI	GCGC	2 cut(s)	1089, 1112
BstKTI	GATC	8 cut(s)	199, 229, 544, 661, 688, 989, 1158, 1163
BstMBI	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	3 cut(s)	194, 595, 611
BstNSI	RCATGY	1 cut(s)	15
BstPAI	GACNNNNGTC	1 cut(s)	1290
BstSCI	CCNGG	3 cut(s)	192, 593, 609
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	2 cut(s)	601, 1138
BstV2I	GAAGAC	1 cut(s)	1239
BstX2I	RGATCY	3 cut(s)	196, 685, 986
BstYI	RGATCY	3 cut(s)	196, 685, 986
Bsu15I	ATCGAT	1 cut(s)	488
BsuTUI	ATCGAT	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	4 cut(s)	730, 772, 869, 1197
BtuMI	TCGCGA	1 cut(s)	849
CciI	TCATGA	1 cut(s)	1248
CfoI	GCGC	2 cut(s)	1089, 1112
Cfr13I	GGNCC	2 cut(s)	374, 1013
ClaI	ATCGAT	1 cut(s)	488
CseI	GACGC	2 cut(s)	742, 919
DdeI	CTNAG	3 cut(s)	653, 996, 1174
DpnI	GATC	8 cut(s)	198, 228, 543, 660, 687, 988, 1157, 1162
DpnII	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
DrdI	GACNNNNNNGTC	1 cut(s)	713
DriI	GACNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	713
Eam1104I	CTCTTC	2 cut(s)	62, 1259
Eam1105I	GACNNNNNGTC	1 cut(s)	524
EarI	CTCTTC	2 cut(s)	62, 1259
Eco47I	GGWCC	2 cut(s)	374, 1013
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	192, 593, 609
FaqI	GGGAC	2 cut(s)	47, 740
FauNDI	CATATG	2 cut(s)	859, 956
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	615, 1127
Fsp4HI	GCNGC	2 cut(s)	615, 1127
FspBI	CTAG	9 cut(s)	411, 467, 683, 759, 843, 914, 1040, 1184, 1274
GlaI	GCGC	2 cut(s)	1088, 1111
GluI	GCNGC	2 cut(s)	615, 1127
GsuI	CTGGAG	1 cut(s)	1239
HaeII	RGCGCY	1 cut(s)	1113
HapII	CCGG	1 cut(s)	1113
HgaI	GACGC	2 cut(s)	742, 919
HhaI	GCGC	2 cut(s)	1089, 1112
Hin1I	GRCGYC	1 cut(s)	753
Hin6I	GCGC	2 cut(s)	1087, 1110
HinP1I	GCGC	2 cut(s)	1087, 1110
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	2 cut(s)	305, 650
HinfI	GANTC	4 cut(s)	72, 404, 881, 1252
HpaII	CCGG	1 cut(s)	1113
HphI	GGTGA	3 cut(s)	118, 812, 989
Hpy166II	GTNNAC	4 cut(s)	377, 418, 605, 718
Hpy188I	TCNGA	5 cut(s)	313, 322, 1160, 1177, 1318
Hpy188III	TCNNGA	8 cut(s)	411, 516, 683, 692, 827, 848, 1249, 1256
Hpy8I	GTNNAC	4 cut(s)	377, 418, 605, 718
HpyAV	CCTTC	2 cut(s)	184, 1252
HpyCH4III	ACNGT	3 cut(s)	873, 977, 1009
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	9 cut(s)	87, 112, 585, 617, 812, 857, 869, 1022, 1205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	3 cut(s)	653, 996, 1174
HpySE526I	ACGT	1 cut(s)	601
Hsp92I	GRCGYC	1 cut(s)	753
HspAI	GCGC	2 cut(s)	1087, 1110
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
LmnI	GCTCC	2 cut(s)	20, 1123
Lsp1109I	GCAGC	2 cut(s)	601, 1138
MaeI	CTAG	9 cut(s)	411, 467, 683, 759, 843, 914, 1040, 1184, 1274
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	4 cut(s)	124, 676, 935, 1192
MalI	GATC	8 cut(s)	198, 228, 543, 660, 687, 988, 1157, 1162
MboI	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
MboII	GAAGA	7 cut(s)	79, 169, 172, 680, 941, 1244, 1276
MfeI	CAATTG	1 cut(s)	1151
MflI	RGATCY	3 cut(s)	196, 685, 986
MlyI	GAGTC	1 cut(s)	1246
MmeI	TCCRAC	1 cut(s)	991
MnlI	CCTC	3 cut(s)	146, 407, 828
MroXI	GAANNNNTTC	2 cut(s)	71, 1236
MseI	TTAA	4 cut(s)	210, 303, 576, 876
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	150
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	1113
MspR9I	CCNGG	3 cut(s)	194, 595, 611
MunI	CAATTG	1 cut(s)	1151
Mva1269I	GAATGC	1 cut(s)	1207
MvaI	CCWGG	3 cut(s)	194, 595, 611
MvnI	CGCG	1 cut(s)	849
MwoI	GCNNNNNNNGC	1 cut(s)	393
NdeI	CATATG	2 cut(s)	859, 956
NdeII	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
NmuCI	GTSAC	3 cut(s)	124, 935, 1192
NruI	TCGCGA	1 cut(s)	849
NspI	RCATGY	1 cut(s)	15
PagI	TCATGA	1 cut(s)	1248
PasI	CCCWGGG	1 cut(s)	594
PctI	GAATGC	1 cut(s)	1207
PdmI	GAANNNNTTC	2 cut(s)	71, 1236
PfeI	GAWTC	3 cut(s)	72, 404, 881
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	616, 1128
PleI	GAGTC	1 cut(s)	1246
PpsI	GAGTC	1 cut(s)	1246
PshAI	GACNNNNGTC	1 cut(s)	1290
PshBI	ATTAAT	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	192, 593, 609
PspGI	CCWGG	3 cut(s)	192, 593, 609
PspPI	GGNCC	2 cut(s)	374, 1013
PsuI	RGATCY	3 cut(s)	196, 685, 986
RruI	TCGCGA	1 cut(s)	849
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	210, 303, 576, 876
SatI	GCNGC	2 cut(s)	615, 1127
Sau3AI	GATC	8 cut(s)	196, 226, 541, 658, 685, 986, 1155, 1160
Sau96I	GGNCC	2 cut(s)	374, 1013
SchI	GAGTC	1 cut(s)	1246
ScrFI	CCNGG	3 cut(s)	194, 595, 611
SinI	GGWCC	2 cut(s)	374, 1013
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	842
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	9 cut(s)	411, 467, 683, 759, 843, 914, 1040, 1184, 1274
StyD4I	CCNGG	3 cut(s)	192, 593, 609
TaaI	ACNGT	3 cut(s)	873, 977, 1009
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	3 cut(s)	294, 488, 528
TfiI	GAWTC	3 cut(s)	72, 404, 881
Tru1I	TTAA	4 cut(s)	210, 303, 576, 876
Tru9I	TTAA	4 cut(s)	210, 303, 576, 876
TscAI	CASTG	4 cut(s)	737, 772, 876, 1197
TseFI	GTSAC	3 cut(s)	124, 935, 1192
TseI	GCWGC	2 cut(s)	614, 1126
Tsp45I	GTSAC	3 cut(s)	124, 935, 1192
TspDTI	ATGAA	6 cut(s)	417, 455, 630, 894, 980, 1277
TspGWI	ACGGA	2 cut(s)	191, 735
TspRI	CASTG	4 cut(s)	737, 772, 876, 1197
Van91I	CCANNNNNTGG	1 cut(s)	383
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	374, 1013
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	458
XbaI	TCTAGA	2 cut(s)	410, 682
XceI	RCATGY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmnI	GAANNNNTTC	2 cut(s)	71, 1236
XspI	CTAG	9 cut(s)	411, 467, 683, 759, 843, 914, 1040, 1184, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.