Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Reverse (-)

7961566 .. 7962888

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016586

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCGAGAACATGCTCCCAAGATGTGTTGTGGGACATTCTTTGTAGATTGCGTGTTAAATCTTTGAAGAGATTCCAGTGTGTGTGCAAATCTTGGTATGCTCTATTTATGCACCCAAGTTTTGTCACCAAACACCTCCACTTTCACAGCAGACAGAACCAGAATACTCGTTCCTTCCTGCTTTCTCACTCCCTGGATCCACGTTATCGTTATGAGTTGCCCATTGATCAACGAAAACGCACTTGTTTCAGCTTGGTCAATTTAGACGAAACCACTGATGATATTGTTTCTATCGACTGGCTTAAGCTTTCGGATAATTCAGACCAAGAAAACGAGTTTTCAAATTATTGGTGTCAAGATGTGAGAATTTTGGGTCCACGCAATGCAATATATTGCCTCCATGAATCATCTAAAGATCACGGCGATGTAATTGGGCTGATGAATGTTTCGTTGAGAGAATTCAAGCTAGTTCCAAAACCAGAACAATCGATTATTTGGCATTCAGGTTCTCTATCACGACAAGTTGTCGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGTTTTTTTTTAAGGATTGCACTTTTCCCAGGGAACGTGAACGCCAGGCTGCAATATATCATGTAAGTTCTAACTCATGGACAAAGCTTAGTGAGCCTTTGCTTGACCATGTTACTCTATATCTTCAAGATTGTATTACTGACACCAATGTCAGCGGAAATGCTCACTGGTTGGCTTTTGATGATGGCGTCCCTGGTGGCAGTGATTGGCATATTCTTTCTTTTGACATGGTTGGTGAAGTGTTTGCAAAGATAGAGCTTCCAGAATCGAGGATTCCTAGTGGCGAAAGTGAATATGTCGTTGCACTGTTTAATGAATCTCTTTCTCTTATTGTTTATCCAAAGACGCTAGTTTCTTTCTTGGAAGAAAGTGACACTAAATGTTTTGACATATGGGTTATGAAAGACTACGGTGATGCCAGATCTTGGACTAAGCAATTCACAGTTGGACCAGTTGCATTTGCTGACACACTACTAGGTTTTTGGCGAAATGGCGAGTTTCTCATACAAGATGGTTCGGGGCGCACTATCACTTACGACCCAAGCGCCGGAAAGATGGAGCAGCTTTGTTTTGGTCAAGGGCTTCAATTGATGCGATCTTGTATCTACTCAGAGAGCCTAGTTTCAGTGACAGGGAATGCACGAAATGATTTTGAAATACTAGTTGAAGACTTTCCCTTCCTCATGACTCCAGACATGAAGAGAGTCCTAGCATATATAGACAAATGTCCATGTCGTTCTTGTTCAACTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

441

Amino Acids

50.69

Weight (kDa)

5.44

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	121 - 354	9.3e-11	F-box associated beta propeller domain
FBA_1	PF07734	146 - 363	8.7e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	713
AccB7I	CCANNNNNTGG	1 cut(s)	990
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	3 cut(s)	191, 204, 536
AcsI	RAATTY	2 cut(s)	366, 458
AcyI	GRCGYC	1 cut(s)	753
AfiI	CCNNNNNNNGG	2 cut(s)	990, 1112
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	8 cut(s)	67, 342, 463, 692, 1151, 1220, 1232, 1311
AhdI	GACNNNNNGTC	1 cut(s)	524
AhlI	ACTAGT	1 cut(s)	1225
AjnI	CCWGG	4 cut(s)	192, 593, 609, 757
AluBI	AGCT	6 cut(s)	252, 307, 466, 652, 823, 1129
AluI	AGCT	6 cut(s)	252, 307, 466, 652, 823, 1129
AlwI	GGATC	3 cut(s)	191, 204, 536
ApeKI	GCWGC	2 cut(s)	614, 1126
ApoI	RAATTY	2 cut(s)	366, 458
Asp700I	GAANNNNTTC	2 cut(s)	71, 1236
AspLEI	GCGC	2 cut(s)	1089, 1112
AspS9I	GGNCC	2 cut(s)	374, 1013
AsuHPI	GGTGA	3 cut(s)	118, 812, 989
AvaII	GGWCC	2 cut(s)	374, 1013
BamHI	GGATCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	1239
BbvI	GCAGC	2 cut(s)	601, 1138
BccI	CCATC	3 cut(s)	743, 1070, 1114
BceAI	ACGGC	1 cut(s)	436
BciT130I	CCWGG	4 cut(s)	194, 595, 611, 759
BclI	TGATCA	1 cut(s)	226
BcuI	ACTAGT	1 cut(s)	1225
BfaI	CTAG	7 cut(s)	467, 843, 914, 1040, 1184, 1226, 1274
BfoI	RGCGCY	1 cut(s)	1113
BfrI	CTTAAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	986
BisI	GCNGC	2 cut(s)	615, 1127
BlsI	GCNGC	2 cut(s)	616, 1128
Bme1390I	CCNGG	4 cut(s)	194, 595, 611, 759
Bme18I	GGWCC	2 cut(s)	374, 1013
BmeRI	GACNNNNNGTC	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	374, 1013
BmiI	GGNNCC	2 cut(s)	198, 375
BmrFI	CCNGG	4 cut(s)	194, 595, 611, 759
BmsI	GCATC	2 cut(s)	970, 1146
BoxI	GACNNNNGTC	1 cut(s)	1290
BpiI	GAAGAC	1 cut(s)	1239
BpmI	CTGGAG	1 cut(s)	1239
Bsa29I	ATCGAT	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	753
BsaJI	CCNNGG	4 cut(s)	192, 593, 594, 757
Bsc4I	CCNNNNNNNGG	2 cut(s)	990, 1112
Bse1I	ACTGG	4 cut(s)	76, 302, 737, 1016
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	4 cut(s)	194, 595, 611, 759
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	4 cut(s)	192, 593, 594, 757
BseLI	CCNNNNNNNGG	2 cut(s)	990, 1112
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	1188
BseNI	ACTGG	4 cut(s)	76, 302, 737, 1016
BseXI	GCAGC	2 cut(s)	601, 1138
BshVI	ATCGAT	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	1113
BslFI	GGGAC	2 cut(s)	47, 740
BslI	CCNNNNNNNGG	2 cut(s)	990, 1112
BsmFI	GGGAC	2 cut(s)	47, 740
BsmI	GAATGC	2 cut(s)	499, 1207
Bsp143I	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
BspACI	CCGC	1 cut(s)	720
BspCNI	CTCAG	1 cut(s)	1187
BspDI	ATCGAT	1 cut(s)	488
BspHI	TCATGA	1 cut(s)	1248
BspLI	GGNNCC	2 cut(s)	198, 375
BspPI	GGATC	3 cut(s)	191, 204, 536
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	388
BsrI	ACTGG	4 cut(s)	76, 302, 737, 1016
BssECI	CCNNGG	4 cut(s)	192, 593, 594, 757
BssMI	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
BssNI	GRCGYC	1 cut(s)	753
Bst2UI	CCWGG	4 cut(s)	194, 595, 611, 759
Bst4CI	ACNGT	3 cut(s)	873, 977, 1009
Bst6I	CTCTTC	2 cut(s)	62, 1259
BstACI	GRCGYC	1 cut(s)	753
BstAFI	CTTAAG	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	653, 996, 1174
BstH2I	RGCGCY	1 cut(s)	1113
BstHHI	GCGC	2 cut(s)	1089, 1112
BstKTI	GATC	6 cut(s)	199, 229, 418, 544, 989, 1163
BstMBI	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstNI	CCWGG	4 cut(s)	194, 595, 611, 759
BstNSI	RCATGY	1 cut(s)	15
BstPAI	GACNNNNGTC	1 cut(s)	1290
BstSCI	CCNGG	4 cut(s)	192, 593, 609, 757
BstV1I	GCAGC	2 cut(s)	601, 1138
BstV2I	GAAGAC	1 cut(s)	1239
BstX2I	RGATCY	2 cut(s)	196, 986
BstYI	RGATCY	2 cut(s)	196, 986
Bsu15I	ATCGAT	1 cut(s)	488
BsuTUI	ATCGAT	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	6 cut(s)	83, 273, 730, 772, 869, 1197
CciI	TCATGA	1 cut(s)	1248
CfoI	GCGC	2 cut(s)	1089, 1112
Cfr13I	GGNCC	2 cut(s)	374, 1013
ClaI	ATCGAT	1 cut(s)	488
CseI	GACGC	2 cut(s)	742, 919
CviAII	CATG	9 cut(s)	12, 401, 626, 642, 674, 793, 1249, 1261, 1296
DdeI	CTNAG	3 cut(s)	653, 996, 1174
DpnI	GATC	6 cut(s)	198, 228, 417, 543, 988, 1162
DpnII	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
DrdI	GACNNNNNNGTC	1 cut(s)	713
DriI	GACNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	713
Eam1104I	CTCTTC	2 cut(s)	62, 1259
Eam1105I	GACNNNNNGTC	1 cut(s)	524
EarI	CTCTTC	2 cut(s)	62, 1259
Eco47I	GGWCC	2 cut(s)	374, 1013
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	4 cut(s)	192, 593, 609, 757
FaeI	CATG	9 cut(s)	15, 404, 629, 645, 677, 796, 1252, 1264, 1299
FaqI	GGGAC	2 cut(s)	47, 740
FatI	CATG	9 cut(s)	11, 400, 625, 641, 673, 792, 1248, 1260, 1295
FauNDI	CATATG	1 cut(s)	956
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	615, 1127
Fsp4HI	GCNGC	2 cut(s)	615, 1127
FspBI	CTAG	7 cut(s)	467, 843, 914, 1040, 1184, 1226, 1274
GlaI	GCGC	2 cut(s)	1088, 1111
GluI	GCNGC	2 cut(s)	615, 1127
GsuI	CTGGAG	1 cut(s)	1239
HaeII	RGCGCY	1 cut(s)	1113
HapII	CCGG	1 cut(s)	1113
HgaI	GACGC	2 cut(s)	742, 919
HhaI	GCGC	2 cut(s)	1089, 1112
Hin1I	GRCGYC	1 cut(s)	753
Hin1II	CATG	9 cut(s)	15, 404, 629, 645, 677, 796, 1252, 1264, 1299
Hin6I	GCGC	2 cut(s)	1087, 1110
HinP1I	GCGC	2 cut(s)	1087, 1110
HindIII	AAGCTT	2 cut(s)	305, 650
HinfI	GANTC	7 cut(s)	72, 404, 830, 838, 881, 1252, 1269
HpaII	CCGG	1 cut(s)	1113
HphI	GGTGA	3 cut(s)	118, 812, 989
Hpy166II	GTNNAC	2 cut(s)	377, 605
Hpy188I	TCNGA	4 cut(s)	313, 322, 1177, 1318
Hpy188III	TCNNGA	6 cut(s)	356, 516, 692, 827, 1249, 1256
Hpy8I	GTNNAC	2 cut(s)	377, 605
HpyAV	CCTTC	2 cut(s)	184, 1252
HpyCH4III	ACNGT	3 cut(s)	873, 977, 1009
HpyCH4IV	ACGT	2 cut(s)	202, 601
HpyCH4V	TGCA	9 cut(s)	87, 112, 386, 585, 617, 812, 869, 1022, 1205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpyF3I	CTNAG	3 cut(s)	653, 996, 1174
HpySE526I	ACGT	2 cut(s)	202, 601
Hsp92I	GRCGYC	1 cut(s)	753
Hsp92II	CATG	9 cut(s)	15, 404, 629, 645, 677, 796, 1252, 1264, 1299
HspAI	GCGC	2 cut(s)	1087, 1110
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
LmnI	GCTCC	2 cut(s)	20, 1123
Lsp1109I	GCAGC	2 cut(s)	601, 1138
LweI	GCATC	2 cut(s)	970, 1146
MaeI	CTAG	7 cut(s)	467, 843, 914, 1040, 1184, 1226, 1274
MaeII	ACGT	2 cut(s)	202, 601
MaeIII	GTNAC	4 cut(s)	124, 676, 935, 1192
MalI	GATC	6 cut(s)	198, 228, 417, 543, 988, 1162
MboI	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
MboII	GAAGA	5 cut(s)	79, 680, 941, 1244, 1276
MfeI	CAATTG	1 cut(s)	1151
MflI	RGATCY	2 cut(s)	196, 986
MluCI	AATT	9 cut(s)	259, 316, 343, 366, 429, 458, 531, 1001, 1151
MlyI	GAGTC	2 cut(s)	1246, 1278
MmeI	TCCRAC	1 cut(s)	991
MnlI	CCTC	4 cut(s)	146, 407, 828, 1256
MroXI	GAANNNNTTC	2 cut(s)	71, 1236
MseI	TTAA	4 cut(s)	57, 303, 576, 876
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	720
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	1113
MspR9I	CCNGG	4 cut(s)	194, 595, 611, 759
MunI	CAATTG	1 cut(s)	1151
Mva1269I	GAATGC	2 cut(s)	499, 1207
MvaI	CCWGG	4 cut(s)	194, 595, 611, 759
MwoI	GCNNNNNNNGC	1 cut(s)	658
NdeI	CATATG	1 cut(s)	956
NdeII	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
NlaIII	CATG	9 cut(s)	15, 404, 629, 645, 677, 796, 1252, 1264, 1299
NlaIV	GGNNCC	2 cut(s)	198, 375
NmuCI	GTSAC	3 cut(s)	124, 935, 1192
NspI	RCATGY	1 cut(s)	15
PagI	TCATGA	1 cut(s)	1248
PasI	CCCWGGG	1 cut(s)	594
PctI	GAATGC	2 cut(s)	499, 1207
PdmI	GAANNNNTTC	2 cut(s)	71, 1236
PfeI	GAWTC	5 cut(s)	72, 404, 830, 838, 881
PflMI	CCANNNNNTGG	1 cut(s)	990
PkrI	GCNGC	2 cut(s)	616, 1128
PleI	GAGTC	2 cut(s)	1246, 1277
PpsI	GAGTC	2 cut(s)	1246, 1277
PshAI	GACNNNNGTC	1 cut(s)	1290
Psp6I	CCWGG	4 cut(s)	192, 593, 609, 757
PspGI	CCWGG	4 cut(s)	192, 593, 609, 757
PspN4I	GGNNCC	2 cut(s)	198, 375
PspPI	GGNCC	2 cut(s)	374, 1013
PsuI	RGATCY	2 cut(s)	196, 986
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	57, 303, 576, 876
SatI	GCNGC	2 cut(s)	615, 1127
Sau3AI	GATC	6 cut(s)	196, 226, 415, 541, 986, 1160
Sau96I	GGNCC	2 cut(s)	374, 1013
SchI	GAGTC	2 cut(s)	1246, 1278
ScrFI	CCNGG	4 cut(s)	194, 595, 611, 759
SfaNI	GCATC	2 cut(s)	970, 1146
SinI	GGWCC	2 cut(s)	374, 1013
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	1225
Sse9I	AATT	9 cut(s)	259, 316, 343, 366, 429, 458, 531, 1001, 1151
SsiI	CCGC	1 cut(s)	720
SspMI	CTAG	7 cut(s)	467, 843, 914, 1040, 1184, 1226, 1274
StyD4I	CCNGG	4 cut(s)	192, 593, 609, 757
TaaI	ACNGT	3 cut(s)	873, 977, 1009
TaiI	ACGT	2 cut(s)	205, 604
TaqI	TCGA	4 cut(s)	294, 488, 528, 833
TasI	AATT	9 cut(s)	259, 316, 343, 366, 429, 458, 531, 1001, 1151
TfiI	GAWTC	5 cut(s)	72, 404, 830, 838, 881
Tru1I	TTAA	4 cut(s)	57, 303, 576, 876
Tru9I	TTAA	4 cut(s)	57, 303, 576, 876
TscAI	CASTG	6 cut(s)	83, 280, 737, 772, 876, 1197
TseFI	GTSAC	3 cut(s)	124, 935, 1192
TseI	GCWGC	2 cut(s)	614, 1126
Tsp45I	GTSAC	3 cut(s)	124, 935, 1192
TspDTI	ATGAA	5 cut(s)	417, 455, 894, 980, 1277
TspRI	CASTG	6 cut(s)	83, 280, 737, 772, 876, 1197
Van91I	CCANNNNNTGG	1 cut(s)	990
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	374, 1013
XapI	RAATTY	2 cut(s)	366, 458
XceI	RCATGY	1 cut(s)	15
XmnI	GAANNNNTTC	2 cut(s)	71, 1236
XspI	CTAG	7 cut(s)	467, 843, 914, 1040, 1184, 1226, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.