Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Reverse (-)

1704651 .. 1705901

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1023400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAGGGCCGCAAAATACAAATGCATTCCCTCCGGCGTGTTGGCAGACATTCTTTTCAGGCTGCCTGTGAAATCTCTGAAGCGGTTCGAATGCGTATGCAAATCCTGGTATGATCTCATCAAAGACCCGAGTTTCAACATCCAACACCTCCATCACTCCAAAAGCGTGAATCAGCATTGTCTCCTTCAGAAAGGTATACGTAATAGTCATGTCTCCTTGCTTTGTTTCGACGAAATATCGCTTCTTTCTCGGCATCGGCTAAACTTACCCTCGGTCTTTTCTGAAATTTTGGGTCCTTGCAATGGAATCTACTGCTTCATAAGGCTTAATGTCGAATTCGAACTGGATCTTATTGCACTGGCAAATGTTTCACTCAGAGAATTCATGGTTGTTCCAGACTTGAGCATCTCACATCCTCACAGCCAAAGTCAAAGCGTGAAACTATGTGGATTTGGATTTGATCGTAAAACCAATGATTACAAGTTGGTTTTAATTCTCAGTTACGCAGATAGAGCAACGGGGATCGAATTCGATTGTAAGGAGGTTGTATATAGCTTGCGTTCCAAGTCATGGAGAGAATTAGATCATACTTTTCCGTATGCTGAAGTTACCCATTGGCTTTCTCCGTTTTGTAAAATTAGCTATTGGCCTTTCCTTTTGACGAGTGACAGTGGCACCTATGTCAACGGGAATTCTCACTGGTTGGTCAGTGATACCACTCATTGGTTGGCCAACGATGATATTCGTTATACAATTCGTTATTTTGACATGGTTGATGAAGTGTTCCGACGGATTTCGCTTCCAAAGTTACCGGAGTTTTCCTCGTACGGTGACATGTATGTCGATATTAATGCATTGTACACTGATTCACTTTCCGTGGTTGTTCGTCCGAAGTCTTATATCCCTGACAAGACTTGTGAAGTATGGATCATGCACGACTACGGTGACGATGAATCATGGACTAAACTAGTTACGATAGGGCCAGTTGAAGGCATTGCAAGGTCACTGAAGCTGTTGGGATTTTGGCAAAAAGGAGAGTTTCTTTTCGAATATGACGAAGAACAAGTGATCTCATACAACCCAAACACTCAGAAGATCACTCAGAAATTCCGAATTTGTGGATCATTGCGAGCTTACACAGAGAGCTTGGTTTCAATCGTAGGAGACCAACGGGACGACCAAAATTTGTTGTTTGATATTGTTAAGGAAGGTGATGATCCAGCTCTTCAACAACCCACATCTTCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

417

Amino Acids

47.99

Weight (kDa)

5.92

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 47	6.1e-08	F-box domain
F-box-like	PF12937	9 - 44	2e-06	F-box-like
FBA_1	PF07734	138 - 375	8.8e-16	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	839
AccB1I	GGYRCC	1 cut(s)	674
AccB7I	CCANNNNNTGG	2 cut(s)	570, 723
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	2 cut(s)	9, 82
AclWI	GGATC	5 cut(s)	354, 530, 935, 1129, 1211
AcoI	YGGCCR	1 cut(s)	729
AcsI	RAATTY	8 cut(s)	285, 335, 380, 527, 691, 1106, 1113, 1183
AcuI	CTGAAG	4 cut(s)	98, 170, 624, 1028
AfaI	GTAC	2 cut(s)	827, 860
AfiI	CCNNNNNNNGG	4 cut(s)	302, 570, 723, 989
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	4 cut(s)	136, 989, 1155, 1229
AhlI	ACTAGT	1 cut(s)	967
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	6 cut(s)	555, 642, 1012, 1133, 1146, 1223
AluI	AGCT	6 cut(s)	555, 642, 1012, 1133, 1146, 1223
Alw26I	GTCTC	3 cut(s)	185, 217, 1158
AlwI	GGATC	5 cut(s)	354, 530, 935, 1129, 1211
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	4 cut(s)	6, 647, 729, 980
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	8 cut(s)	285, 335, 380, 527, 691, 1106, 1113, 1183
AseI	ATTAAT	1 cut(s)	849
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	6, 293, 980
AsuHPI	GGTGA	3 cut(s)	842, 956, 1223
AsuII	TTCGAA	3 cut(s)	87, 339, 1047
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	674
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	185, 217, 1158
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	1 cut(s)	968
BisI	GCNGC	2 cut(s)	9, 62
BlsI	GCNGC	2 cut(s)	10, 63
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	6, 293, 980
BmiI	GGNNCC	2 cut(s)	294, 676
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	2 cut(s)	262, 414
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
Bpu14I	TTCGAA	3 cut(s)	87, 339, 1047
BpuEI	CTTGAG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	1158
BsaJI	CCNNGG	2 cut(s)	270, 876
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 570, 723, 989
Bse1I	ACTGG	4 cut(s)	348, 363, 704, 983
Bse3DI	GCAATG	3 cut(s)	307, 993, 1124
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	270, 876
BseGI	GGATG	2 cut(s)	138, 412
BseLI	CCNNNNNNNGG	4 cut(s)	302, 570, 723, 989
BseMI	GCAATG	3 cut(s)	307, 993, 1124
BseMII	CTCAG	4 cut(s)	388, 511, 1103, 1115
BseNI	ACTGG	4 cut(s)	348, 363, 704, 983
BseXI	GCAGC	1 cut(s)	48
BshFI	GGCC	4 cut(s)	8, 649, 731, 982
BshNI	GGYRCC	1 cut(s)	674
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	33, 812
BsiWI	CGTACG	1 cut(s)	825
BslFI	GGGAC	1 cut(s)	1187
BslI	CCNNNNNNNGG	4 cut(s)	302, 570, 723, 989
BsmAI	GTCTC	3 cut(s)	185, 217, 1158
BsmFI	GGGAC	1 cut(s)	1187
BsmI	GAATGC	2 cut(s)	24, 95
BsnI	GGCC	4 cut(s)	8, 649, 731, 982
Bso31I	GGTCTC	1 cut(s)	1158
BsoBI	CYCGRG	1 cut(s)	127
Bsp119I	TTCGAA	3 cut(s)	87, 339, 1047
Bsp1407I	TGTACA	1 cut(s)	858
BspACI	CCGC	2 cut(s)	9, 82
BspANI	GGCC	4 cut(s)	8, 649, 731, 982
BspCNI	CTCAG	4 cut(s)	387, 510, 1102, 1114
BspHI	TCATGA	1 cut(s)	1247
BspLI	GGNNCC	2 cut(s)	294, 676
BspPI	GGATC	5 cut(s)	354, 530, 935, 1129, 1211
BspQI	GCTCTTC	1 cut(s)	1230
BspT104I	TTCGAA	3 cut(s)	87, 339, 1047
BspT107I	GGYRCC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	1158
BsrDI	GCAATG	3 cut(s)	307, 993, 1124
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	4 cut(s)	348, 363, 704, 983
BssECI	CCNNGG	2 cut(s)	270, 876
BssNAI	GTATAC	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	671, 830, 944
Bst6I	CTCTTC	1 cut(s)	1230
BstAUI	TGTACA	1 cut(s)	858
BstBAI	YACGTR	1 cut(s)	200
BstBI	TTCGAA	3 cut(s)	87, 339, 1047
BstC8I	GCNNGC	2 cut(s)	557, 1131
BstDEI	CTNAG	4 cut(s)	374, 497, 1089, 1101
BstDSI	CCRYGG	1 cut(s)	876
BstF5I	GGATG	2 cut(s)	138, 412
BstMAI	GTCTC	3 cut(s)	185, 217, 1158
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	104
BstSNI	TACGTA	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BstZ17I	GTATAC	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	8, 649, 731, 982
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	138, 412
BtsIMutI	CAGTG	6 cut(s)	356, 676, 697, 715, 861, 1004
Cac8I	GCNNGC	2 cut(s)	557, 1131
CciI	TCATGA	1 cut(s)	1247
Cfr13I	GGNCC	3 cut(s)	6, 293, 980
Csp6I	GTAC	2 cut(s)	826, 859
CviAII	CATG	8 cut(s)	209, 385, 570, 769, 835, 931, 957, 1248
CviQI	GTAC	2 cut(s)	826, 859
DdeI	CTNAG	4 cut(s)	374, 497, 1089, 1101
DrdI	GACNNNNNNGTC	1 cut(s)	839
DseDI	GACNNNNNNGTC	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	1 cut(s)	1230
EarI	CTCTTC	1 cut(s)	1230
Eco105I	TACGTA	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	1158
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	4 cut(s)	98, 170, 624, 1028
Eco88I	CYCGRG	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	4 cut(s)	335, 380, 527, 691
EcoRII	CCWGG	1 cut(s)	104
EcoT22I	ATGCAT	2 cut(s)	26, 856
FaeI	CATG	8 cut(s)	212, 388, 573, 772, 838, 934, 960, 1251
FaqI	GGGAC	1 cut(s)	1187
FatI	CATG	8 cut(s)	208, 384, 569, 768, 834, 930, 956, 1247
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	9, 62
FokI	GGATG	2 cut(s)	125, 399
Fsp4HI	GCNGC	2 cut(s)	9, 62
FspBI	CTAG	1 cut(s)	968
GluI	GCNGC	2 cut(s)	9, 62
HaeIII	GGCC	4 cut(s)	8, 649, 731, 982
HapII	CCGG	2 cut(s)	33, 812
Hin1II	CATG	8 cut(s)	212, 388, 573, 772, 838, 934, 960, 1251
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	4 cut(s)	169, 306, 866, 953
HpaII	CCGG	2 cut(s)	33, 812
HphI	GGTGA	3 cut(s)	842, 956, 1223
Hpy166II	GTNNAC	3 cut(s)	197, 685, 861
Hpy188I	TCNGA	9 cut(s)	78, 189, 283, 377, 788, 891, 1092, 1104, 1112
Hpy188III	TCNNGA	2 cut(s)	395, 1248
Hpy8I	GTNNAC	3 cut(s)	197, 685, 861
Hpy99I	CGWCG	2 cut(s)	233, 792
HpyAV	CCTTC	3 cut(s)	194, 983, 1202
HpyCH4III	ACNGT	3 cut(s)	671, 830, 944
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	7 cut(s)	24, 99, 300, 356, 854, 934, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	4 cut(s)	374, 497, 1089, 1101
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	8 cut(s)	212, 388, 573, 772, 838, 934, 960, 1251
LguI	GCTCTTC	1 cut(s)	1230
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	2 cut(s)	262, 414
MaeI	CTAG	1 cut(s)	968
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	8 cut(s)	500, 607, 665, 807, 830, 944, 970, 1002
MboII	GAAGA	4 cut(s)	1070, 1105, 1217, 1233
MflI	RGATCY	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	731
MluNI	TGGCCA	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	166, 811
MnlI	CCTC	6 cut(s)	40, 158, 280, 426, 535, 832
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	2 cut(s)	26, 856
MroXI	GAANNNNTTC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	4 cut(s)	327, 491, 849, 1203
Msp20I	TGGCCA	1 cut(s)	731
MspI	CCGG	2 cut(s)	33, 812
MspR9I	CCNGG	1 cut(s)	106
Mva1269I	GAATGC	2 cut(s)	24, 95
MvaI	CCWGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	512
NlaIII	CATG	8 cut(s)	212, 388, 573, 772, 838, 934, 960, 1251
NlaIV	GGNNCC	2 cut(s)	294, 676
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	4 cut(s)	665, 830, 944, 1002
NsiI	ATGCAT	2 cut(s)	26, 856
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	3 cut(s)	87, 339, 1047
PagI	TCATGA	1 cut(s)	1247
PciI	ACATGT	1 cut(s)	834
PciSI	GCTCTTC	1 cut(s)	1230
PcsI	WCGNNNNNNNCGW	1 cut(s)	1053
PctI	GAATGC	2 cut(s)	24, 95
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	169, 306, 866, 953
Pfl23II	CGTACG	1 cut(s)	825
PflMI	CCANNNNNTGG	2 cut(s)	570, 723
PkrI	GCNGC	2 cut(s)	10, 63
Ppu21I	YACGTR	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	293
PscI	ACATGT	1 cut(s)	834
PshBI	ATTAAT	1 cut(s)	849
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspLI	CGTACG	1 cut(s)	825
PspN4I	GGNNCC	2 cut(s)	294, 676
PspPI	GGNCC	3 cut(s)	6, 293, 980
PspPPI	RGGWCCY	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	827, 860
RsaNI	GTAC	2 cut(s)	826, 859
SapI	GCTCTTC	1 cut(s)	1230
SaqAI	TTAA	4 cut(s)	327, 491, 849, 1203
SatI	GCNGC	2 cut(s)	9, 62
Sau96I	GGNCC	3 cut(s)	6, 293, 980
ScrFI	CCNGG	1 cut(s)	106
SfaNI	GCATC	2 cut(s)	262, 414
SfuI	TTCGAA	3 cut(s)	87, 339, 1047
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SnaBI	TACGTA	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	967
SsiI	CCGC	2 cut(s)	9, 82
SspMI	CTAG	1 cut(s)	968
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	671, 830, 944
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	8 cut(s)	87, 228, 333, 339, 525, 531, 843, 1047
TaqII	GACCGA	1 cut(s)	262
TatI	WGTACW	1 cut(s)	858
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	4 cut(s)	169, 306, 866, 953
Tru1I	TTAA	4 cut(s)	327, 491, 849, 1203
Tru9I	TTAA	4 cut(s)	327, 491, 849, 1203
TscAI	CASTG	6 cut(s)	363, 676, 704, 715, 868, 1011
TseFI	GTSAC	4 cut(s)	665, 830, 944, 1002
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	4 cut(s)	665, 830, 944, 1002
TspDTI	ATGAA	4 cut(s)	307, 373, 792, 966
TspGWI	ACGGA	4 cut(s)	585, 615, 805, 865
TspRI	CASTG	6 cut(s)	363, 676, 704, 715, 868, 1011
Van91I	CCANNNNNTGG	2 cut(s)	570, 723
VpaK11BI	GGWCC	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	849
XapI	RAATTY	8 cut(s)	285, 335, 380, 527, 691, 1106, 1113, 1183
XceI	RCATGY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	968
Zsp2I	ATGCAT	2 cut(s)	26, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.