Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004519

Physical Location & Seq

Genomic Coordinates Reverse (-)

8605910 .. 8606680

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATTACAAGGTGTTTTTTTTTCAAGGATTGCACTTTTCCCAGGGAACGTGAACGCCAGGCTGCAATATATCATGTAAGTTCTAATTCATGGAAAAAGCTTAGTGATCCTTTGCTTGACCATGTTACTCTACATCTTCAAGATTGTATTACTGACACCAATGTCAACGGAAATGCTCACTGGTTGGCTTATGATGATGGCATCCCTAGTGGCAGTGATTGGCATATTCTTTCTTTTGACATGGTTGGTGAAGTGTTTGCAAAGATAGAGCTTCCAGAATTGAGGATTACTAGTCGCGAAACTGCATATGTCGTTGCACTGTTTAATGAATCTCTTTCTCTTATTGTTTATCCAAAGACGCTAGTTTCTTTCTTGGAAGAAAGCGACACCAAATGTTTTGACATATGGGTTATGAAAGACTACGGTGATGAGAGATCTTGGACTAAGCAATTCACAGTTGGACCAGTTGCATTTGCTGACATACTACTAGGTTTTTGGCGAAATGGCGAGTTTCTCATACAAGATGGTTCGGGGCGCACTATCACTTACGACCCAAGCGCCGGAAAGATGGAGCAGCTTTGTTTTGGTCAAGGGCTTCAATTGATCCGATCTTGTATCTACTCAGAGAGCCTAGTTTCAGTGACAGGGAATGCACGAAATGATTTTGAAATAGTAGTTGAAGACTTTCCCTTCGTCATGACTCCAGACATGAAGAGAGTGCTAGGATATATAGACAAATGTCCATGTCGTTCCTGTTCAACTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

256

Amino Acids

29.17

Weight (kDa)

4.86

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	15 - 180	1.9e-17	F-box associated beta propeller domain
FBA_3	PF08268	23 - 171	3.7e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10020 FvH4_1g10030 FvH4_1g10030 FvH4_1g10050
malus_domestica	MD17G1023400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0095711 RchiOBHm_Chr2g0096811
rosa_laevigata	RLG00000016586 RLG00000016672 RLG00000021169
rosa_multiflora	Rmu_sc0001309.1_g000004 Rmu_ssc0000215.1_g000028
rosa_roxburghii	Rroxscaffold_2G00145290
rosa_rugosa	Rorug02G0061100 Rorug02G0061200 Rorug02G0061300
rosa_samantha	Rh2AG100900 Rh2AG101000 Rh2AG108500 Rh2BG102500 Rh2BG102600 Rh2BG102700 Rh2BG110600 Rh2CG104900 Rh2CG105000 Rh2CG105100 Rh2CG112500 Rh2DG102400 Rh2DG111900 Rh5BG064900
rosa_wichuraiana	Rw2G007660 Rw2G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	297
AclWI	GGATC	2 cut(s)	101, 598
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	6 cut(s)	25, 140, 599, 668, 680, 759
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	41, 57
AluBI	AGCT	3 cut(s)	100, 271, 577
AluI	AGCT	3 cut(s)	100, 271, 577
AlwI	GGATC	2 cut(s)	101, 598
ApeKI	GCWGC	2 cut(s)	62, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	537, 560
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	260, 437
AvaII	GGWCC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	2 cut(s)	49, 586
BccI	CCATC	3 cut(s)	191, 518, 562
BciT130I	CCWGG	2 cut(s)	43, 59
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	6 cut(s)	207, 291, 362, 488, 632, 722
BfoI	RGCGCY	1 cut(s)	561
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	2 cut(s)	63, 575
BlsI	GCNGC	2 cut(s)	64, 576
Bme1390I	CCNGG	2 cut(s)	43, 59
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	2 cut(s)	43, 59
BmsI	GCATC	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	41, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	185, 464
BseBI	CCWGG	2 cut(s)	43, 59
BseDI	CCNNGG	2 cut(s)	41, 42
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	2 cut(s)	185, 464
BseXI	GCAGC	2 cut(s)	49, 586
Bsh1236I	CGCG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	106, 434, 603, 608
Bsp68I	TCGCGA	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	635
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	696
BspPI	GGATC	2 cut(s)	101, 598
BsrI	ACTGG	2 cut(s)	185, 464
BssECI	CCNNGG	2 cut(s)	41, 42
BssMI	GATC	4 cut(s)	106, 434, 603, 608
Bst2UI	CCWGG	2 cut(s)	43, 59
Bst4CI	ACNGT	3 cut(s)	321, 425, 457
Bst6I	CTCTTC	1 cut(s)	707
BstDEI	CTNAG	3 cut(s)	101, 444, 622
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	537, 560
BstKTI	GATC	4 cut(s)	109, 437, 606, 611
BstMBI	GATC	4 cut(s)	106, 434, 603, 608
BstNI	CCWGG	2 cut(s)	43, 59
BstPAI	GACNNNNGTC	1 cut(s)	738
BstSCI	CCNGG	2 cut(s)	41, 57
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	49, 586
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	4 cut(s)	178, 220, 317, 645
BtuMI	TCGCGA	1 cut(s)	297
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	2 cut(s)	537, 560
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	1 cut(s)	367
CviAII	CATG	7 cut(s)	74, 90, 122, 241, 697, 709, 744
CviJI	RGCY	7 cut(s)	62, 100, 188, 271, 577, 595, 630
CviKI_1	RGCY	7 cut(s)	62, 100, 188, 271, 577, 595, 630
DdeI	CTNAG	3 cut(s)	101, 444, 622
DpnI	GATC	4 cut(s)	108, 436, 605, 610
DpnII	GATC	4 cut(s)	106, 434, 603, 608
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	41, 57
FaeI	CATG	7 cut(s)	77, 93, 125, 244, 700, 712, 747
FatI	CATG	7 cut(s)	73, 89, 121, 240, 696, 708, 743
FauNDI	CATATG	2 cut(s)	307, 404
Fnu4HI	GCNGC	2 cut(s)	63, 575
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	63, 575
FspBI	CTAG	6 cut(s)	207, 291, 362, 488, 632, 722
GlaI	GCGC	2 cut(s)	536, 559
GluI	GCNGC	2 cut(s)	63, 575
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	561
HapII	CCGG	1 cut(s)	561
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	2 cut(s)	537, 560
Hin1II	CATG	7 cut(s)	77, 93, 125, 244, 700, 712, 747
Hin6I	GCGC	2 cut(s)	535, 558
HinP1I	GCGC	2 cut(s)	535, 558
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	329, 700
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	2 cut(s)	260, 437
Hpy166II	GTNNAC	2 cut(s)	53, 166
Hpy188I	TCNGA	3 cut(s)	608, 625, 766
Hpy188III	TCNNGA	5 cut(s)	140, 275, 296, 697, 704
Hpy8I	GTNNAC	2 cut(s)	53, 166
HpyAV	CCTTC	1 cut(s)	700
HpyCH4III	ACNGT	3 cut(s)	321, 425, 457
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	7 cut(s)	33, 65, 260, 305, 317, 470, 653
HpyF3I	CTNAG	3 cut(s)	101, 444, 622
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	7 cut(s)	77, 93, 125, 244, 700, 712, 747
HspAI	GCGC	2 cut(s)	535, 558
Kzo9I	GATC	4 cut(s)	106, 434, 603, 608
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	2 cut(s)	49, 586
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	6 cut(s)	207, 291, 362, 488, 632, 722
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	124, 640
MalI	GATC	4 cut(s)	108, 436, 605, 610
MboI	GATC	4 cut(s)	106, 434, 603, 608
MboII	GAAGA	4 cut(s)	128, 389, 692, 724
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	4 cut(s)	85, 278, 449, 599
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	1 cut(s)	324
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	2 cut(s)	43, 59
MunI	CAATTG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	2 cut(s)	43, 59
MvnI	CGCG	1 cut(s)	297
NdeI	CATATG	2 cut(s)	307, 404
NdeII	GATC	4 cut(s)	106, 434, 603, 608
NlaIII	CATG	7 cut(s)	77, 93, 125, 244, 700, 712, 747
NmuCI	GTSAC	1 cut(s)	640
NruI	TCGCGA	1 cut(s)	297
PagI	TCATGA	1 cut(s)	696
PasI	CCCWGGG	1 cut(s)	42
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	64, 576
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PshAI	GACNNNNGTC	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	41, 57
PspGI	CCWGG	2 cut(s)	41, 57
PspPI	GGNCC	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	434
RruI	TCGCGA	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	63, 575
Sau3AI	GATC	4 cut(s)	106, 434, 603, 608
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	43, 59
SetI	ASST	6 cut(s)	14, 52, 102, 273, 493, 579
SfaNI	GCATC	1 cut(s)	210
SinI	GGWCC	1 cut(s)	461
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	4 cut(s)	85, 278, 449, 599
SspMI	CTAG	6 cut(s)	207, 291, 362, 488, 632, 722
StyD4I	CCNGG	2 cut(s)	41, 57
TaaI	ACNGT	3 cut(s)	321, 425, 457
TaiI	ACGT	1 cut(s)	52
TasI	AATT	4 cut(s)	85, 278, 449, 599
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	4 cut(s)	185, 220, 324, 645
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	2 cut(s)	62, 574
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	4 cut(s)	78, 342, 428, 725
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	4 cut(s)	185, 220, 324, 645
VpaK11BI	GGWCC	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	6 cut(s)	207, 291, 362, 488, 632, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.