Rh2BG102500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004519
Physical Location & Seq
Reverse (-)
8496928 .. 8497287
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG102500.1

Sequence Viewer

Length: 360 bp
ATGAAAGACTACGGTGATGACAGATCTTGGACTAAGCAATTCACAGTTGGACCAGTTGCATTTGCTGAAATACTACTAGGTTTTTGGCGAAATGGCGAGTTTCTCATACAAGATGGTTCGCTGCGCACTATCTCATACGACCCAAGCGCCGGAAAGATGGAGCAGCTTTGTTTTGGTCAAGGGCTTCAATTGATCCGATCTTGTATCTACTCAGAGAGCCTAGTTTCAGTGACAGGGAATGCACGAAATGATTTTGAAATAGTAGTTGAAGACTTTCCCTTCGTCATGACTCCAGACATGAAGAGAGTCCTAGCATATATAGACAAATGTCCATGTCGTTCCTGTTCAACTTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

119

Amino Acids

13.43

Weight (kDa)

4.76

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 125
AclWI GGATC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 4 cut(s) 188, 257, 269, 348
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 121, 163
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 2 cut(s) 126, 149
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 108, 175
BccI CCATC 2 cut(s) 107, 151
BfaI CTAG 3 cut(s) 77, 221, 311
BfoI RGCGCY 1 cut(s) 150
BglII AGATCT 1 cut(s) 23
BisI GCNGC 2 cut(s) 122, 164
BlsI GCNGC 2 cut(s) 123, 165
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 108, 175
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 149
BsmI GAATGC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 23, 192, 197
BspCNI CTCAG 1 cut(s) 224
BspHI TCATGA 1 cut(s) 285
BspPI GGATC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 53
BssMI GATC 3 cut(s) 23, 192, 197
Bst4CI ACNGT 2 cut(s) 14, 46
Bst6I CTCTTC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 33, 211
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 126, 149
BstKTI GATC 3 cut(s) 26, 195, 200
BstMBI GATC 3 cut(s) 23, 192, 197
BstPAI GACNNNNGTC 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 108, 175
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 285
CfoI GCGC 2 cut(s) 126, 149
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 3 cut(s) 286, 298, 333
CviJI RGCY 3 cut(s) 166, 184, 219
CviKI_1 RGCY 3 cut(s) 166, 184, 219
DdeI CTNAG 2 cut(s) 33, 211
DpnI GATC 3 cut(s) 25, 194, 199
DpnII GATC 3 cut(s) 23, 192, 197
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 50
FaeI CATG 3 cut(s) 289, 301, 336
FaiI YATR 8 cut(s) 107, 136, 287, 299, 316, 318, 320, 334
FatI CATG 3 cut(s) 285, 297, 332
Fnu4HI GCNGC 2 cut(s) 122, 164
Fsp4HI GCNGC 2 cut(s) 122, 164
FspBI CTAG 3 cut(s) 77, 221, 311
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 2 cut(s) 125, 148
GluI GCNGC 2 cut(s) 122, 164
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 150
HapII CCGG 1 cut(s) 150
HhaI GCGC 2 cut(s) 126, 149
Hin1II CATG 3 cut(s) 289, 301, 336
Hin6I GCGC 2 cut(s) 124, 147
HinP1I GCGC 2 cut(s) 124, 147
HinfI GANTC 2 cut(s) 289, 306
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 197, 214, 355
Hpy188III TCNNGA 2 cut(s) 286, 293
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 14, 46
HpyCH4V TGCA 2 cut(s) 59, 242
HpyF3I CTNAG 2 cut(s) 33, 211
Hsp92II CATG 3 cut(s) 289, 301, 336
HspAI GCGC 2 cut(s) 124, 147
Kzo9I GATC 3 cut(s) 23, 192, 197
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 66, 163, 219, 306, 355
Lsp1109I GCAGC 2 cut(s) 108, 175
MaeI CTAG 3 cut(s) 77, 221, 311
MaeIII GTNAC 1 cut(s) 229
MalI GATC 3 cut(s) 25, 194, 199
MboI GATC 3 cut(s) 23, 192, 197
MboII GAAGA 2 cut(s) 281, 313
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 23
MluCI AATT 2 cut(s) 38, 188
MlyI GAGTC 2 cut(s) 283, 315
MmeI TCCRAC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 273
MspI CCGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 244
NdeII GATC 3 cut(s) 23, 192, 197
NlaIII CATG 3 cut(s) 289, 301, 336
NmuCI GTSAC 1 cut(s) 229
NsbI TGCGCA 1 cut(s) 125
PagI TCATGA 1 cut(s) 285
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 273
PkrI GCNGC 2 cut(s) 123, 165
PleI GAGTC 2 cut(s) 283, 314
PpsI GAGTC 2 cut(s) 283, 314
PshAI GACNNNNGTC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 23
SatI GCNGC 2 cut(s) 122, 164
Sau3AI GATC 3 cut(s) 23, 192, 197
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 283, 315
SetI ASST 2 cut(s) 82, 168
SinI GGWCC 1 cut(s) 50
Sse9I AATT 2 cut(s) 38, 188
SspMI CTAG 3 cut(s) 77, 221, 311
TaaI ACNGT 2 cut(s) 14, 46
TasI AATT 2 cut(s) 38, 188
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 121, 163
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 17, 314
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 3 cut(s) 77, 221, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.