FvH4_1g10030

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
5446507 .. 5448755
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10030.t1

Sequence Viewer

Length: 1332 bp
ATGGCGAGATCATGCTCCGAGGATGTGTTGTCCGACATTCTTTCTAGATTGCGTGTAAAATCTCTGAAGAGATTCCAATGTGTCTGCAAATCTTGGTATGCTCTAATTAGGCGCCCAAGTTTTGTCACCAAACACCTCCACTTTCACAGCAGACAGAACAAGAATAATCGTTCCTTCCTGCTCTCTCACTCCCTATATATATGTTATGAGTTTCCACCTGATGAACGAAAAGACACTCGTTTCAGCTTGGTCCATTTAGAGGAAACCGCAGATGATATTGTTTCTCTTGATTGGATCAAGTTTTCAGATAATTCAGAGCAAGGAAAGAAGTTTCCAGATTATTGGTATGAATACATACAAATTTTTGGTCCACGCAATGGGATATATTGCTTGCATGAATCTTCTAGGGATCACGGCCATGTAATTGCGCTGATGAATGTTTCCTCGAGAGAATTCAAGCTAGTTCCAAAACCAGAAGAATCGATTATTTCGCATACAGGTTTTCGATCGCTTGCTGCTGTTGAAATTGGTTTTGATCCTAAAACCAATGATTACAAGGTGTTCTTTTTCAAGGACTGCTCTTTTCTCAAAGAAGGTTATTGTCAGGCTGCAGTATATCATTTAAATTCTAACTCATGGAAAAAGCTAAGTGATCCTTTGCTTGACCATGTTGATCTATATGCTGGTCATGATTTTAATACTGACACCTATGTCAACGGAAATGTTCACTGGTTGGCTTTTGAGCGCGACCCTGCAGGTCACTGTTGTGGTTTGTATATTCTTTCTTTTGACATGGTCGGTGAAGTGTTGGCAAAGATAGAGCTCCCTGCAGACTTGCGGATTAATTTTGATGAAACTCTATATGCCGTTGCAGTGGTCAATGAATCGCTTTCTCTGATTGTTTATCCACAAATTCTAGATTATCTTCGCCGGGAAAGAAGTTACACAAAATGCTTTGACATATGGGTTATGAAGGACTATGGTAACGAAAGATCTTGGACCAAGGAATTCACAACCGGACCAGTTGAAGATGCTGACAAACTACTAGGTATTTGGCGAAATGGCGAGTTTCTTATAAAACATAAGAAGGGATACACCATCTCTTACGACCAAATTACCCAAAAGATGGAGCAGCTTTGTTTTGGTGAAGGGCTTTATCTGAACAAATCTTGTATCTACTCAGAGAGCCTAGTTTCAGTGACAGGGAATGCACCAAGTGATTATGGAATCGTAGTTGAAGACTTTCCCTTCGTCGTGACTCCAGACGTAATGGGGAGAATCTTAGATAATATAGAGAAATGTCCATCTTGTACCCGTTTAAGTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

51.26

Weight (kDa)

5.94

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 42 5.7e-07 F-box domain
F-box-like PF12937 8 - 43 1.2e-06 F-box-like
FBA_3 PF08268 106 - 360 5e-15 F-box associated beta propeller domain
FBA_1 PF07734 142 - 389 8.1e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AasI GACNNNNNNGTC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 111
AccB7I CCANNNNNTGG 2 cut(s) 377, 1126
AccII CGCG 1 cut(s) 747
AciI CCGC 2 cut(s) 267, 838
AclWI GGATC 4 cut(s) 302, 417, 530, 647
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 5 cut(s) 360, 452, 625, 912, 1007
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 112
AdeI CACNNNGTG 1 cut(s) 1217
AfaI GTAC 1 cut(s) 1312
AfiI CCNNNNNNNGG 3 cut(s) 259, 377, 1126
AgsI TTSAA 5 cut(s) 457, 524, 571, 1028, 1238
AleI CACNNNNGTG 1 cut(s) 765
AluBI AGCT 5 cut(s) 246, 460, 646, 823, 1135
AluI AGCT 5 cut(s) 246, 460, 646, 823, 1135
Alw21I GWGCWC 1 cut(s) 825
AlwI GGATC 4 cut(s) 302, 417, 530, 647
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 3 cut(s) 515, 608, 1132
ApoI RAATTY 5 cut(s) 360, 452, 625, 912, 1007
ArsI GACNNNNNNTTYG 4 cut(s) 352, 384, 1232, 1264
AseI ATTAAT 1 cut(s) 843
Asp700I GAANNNNTTC 2 cut(s) 71, 1242
AspLEI GCGC 3 cut(s) 114, 430, 747
AspS9I GGNCC 4 cut(s) 250, 368, 999, 1019
AsuC2I CCSGG 1 cut(s) 932
AsuHPI GGTGA 3 cut(s) 118, 812, 1157
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 4 cut(s) 250, 368, 999, 1019
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 1245
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 3 cut(s) 502, 595, 1144
BccI CCATC 3 cut(s) 1106, 1120, 1312
BceAI ACGGC 2 cut(s) 430, 851
BciVI GTATCC 1 cut(s) 1085
BcnI CCSGG 1 cut(s) 932
BfaI CTAG 6 cut(s) 45, 405, 461, 917, 1046, 1190
BfmI CTRYAG 3 cut(s) 609, 753, 828
BfoI RGCGCY 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 746
BfuI GTATCC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 992
BisI GCNGC 3 cut(s) 516, 609, 1133
BlsI GCNGC 3 cut(s) 517, 610, 1134
Bme1390I CCNGG 1 cut(s) 932
Bme18I GGWCC 4 cut(s) 250, 368, 999, 1019
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 4 cut(s) 250, 368, 999, 1019
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 932
BmsI GCATC 1 cut(s) 1021
BpiI GAAGAC 1 cut(s) 1245
BpmI CTGGAG 1 cut(s) 1245
BpuMI CCSGG 1 cut(s) 932
Bsa29I ATCGAT 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 18, 1002
BsaWI WCCGGW 1 cut(s) 1016
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 377, 1126
Bse1I ACTGG 2 cut(s) 734, 1022
Bse3DI GCAATG 1 cut(s) 382
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 18, 1002
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 259, 377, 1126
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 1194
BseNI ACTGG 2 cut(s) 734, 1022
BseXI GCAGC 3 cut(s) 502, 595, 1144
Bsh1236I CGCG 1 cut(s) 747
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 2 cut(s) 931, 1017
BslI CCNNNNNNNGG 3 cut(s) 259, 377, 1126
BsmI GAATGC 1 cut(s) 1213
BsnI GGCC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
BspACI CCGC 2 cut(s) 267, 838
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 1 cut(s) 1193
BspDI ATCGAT 1 cut(s) 482
BspFNI CGCG 1 cut(s) 747
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 3 cut(s) 613, 757, 832
BspMI ACCTGC 1 cut(s) 746
BspPI GGATC 4 cut(s) 302, 417, 530, 647
BspT107I GGYRCC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 2 cut(s) 734, 1022
BssECI CCNNGG 2 cut(s) 18, 1002
BssMI GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 1002
Bst4CI ACNGT 1 cut(s) 764
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 392, 513
BstDEI CTNAG 3 cut(s) 647, 1180, 1282
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 747
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 3 cut(s) 114, 430, 747
BstKTI GATC 8 cut(s) 11, 297, 412, 509, 538, 655, 676, 995
BstMBI GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
BstMCI CGRYCG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 930
BstSFI CTRYAG 3 cut(s) 609, 753, 828
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 502, 595, 1144
BstV2I GAAGAC 1 cut(s) 1245
BstX2I RGATCY 1 cut(s) 992
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 1 cut(s) 992
Bsu15I ATCGAT 1 cut(s) 482
BsuI GTATCC 1 cut(s) 1085
BsuRI GGCC 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 482
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 4 cut(s) 727, 760, 879, 1203
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 2 cut(s) 392, 513
CciI TCATGA 1 cut(s) 688
CfoI GCGC 3 cut(s) 114, 430, 747
Cfr13I GGNCC 4 cut(s) 250, 368, 999, 1019
ClaI ATCGAT 1 cut(s) 482
Csp6I GTAC 1 cut(s) 1311
CviAII CATG 7 cut(s) 12, 395, 419, 636, 668, 689, 793
CviQI GTAC 1 cut(s) 1311
DdeI CTNAG 3 cut(s) 647, 1180, 1282
DinI GGCGCC 1 cut(s) 113
DpnI GATC 8 cut(s) 10, 296, 411, 508, 537, 654, 675, 994
DpnII GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
DraI TTTAAA 1 cut(s) 624
DraIII CACNNNGTG 1 cut(s) 1217
DrdI GACNNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 710
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 1002
Eco24I GRGCYC 1 cut(s) 825
Eco47I GGWCC 4 cut(s) 250, 368, 999, 1019
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 823
EcoRI GAATTC 2 cut(s) 452, 1007
EcoT14I CCWWGG 1 cut(s) 1002
EcoT38I GRGCYC 1 cut(s) 825
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 1002
FaeI CATG 7 cut(s) 15, 398, 422, 639, 671, 692, 796
FalI AAGNNNNNCTT 4 cut(s) 548, 580, 640, 672
FatI CATG 7 cut(s) 11, 394, 418, 635, 667, 688, 792
FauNDI CATATG 1 cut(s) 962
Fnu4HI GCNGC 3 cut(s) 516, 609, 1133
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 3 cut(s) 516, 609, 1133
FspBI CTAG 6 cut(s) 45, 405, 461, 917, 1046, 1190
GlaI GCGC 3 cut(s) 113, 429, 746
GluI GCNGC 3 cut(s) 516, 609, 1133
GsuI CTGGAG 1 cut(s) 1245
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 931, 1017
HhaI GCGC 3 cut(s) 114, 430, 747
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 7 cut(s) 15, 398, 422, 639, 671, 692, 796
Hin6I GCGC 3 cut(s) 112, 428, 745
HinP1I GCGC 3 cut(s) 112, 428, 745
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 7 cut(s) 72, 398, 479, 884, 1227, 1258, 1278
HpaII CCGG 2 cut(s) 931, 1017
HphI GGTGA 3 cut(s) 118, 812, 1157
Hpy166II GTNNAC 3 cut(s) 371, 715, 727
Hpy188I TCNGA 8 cut(s) 19, 34, 66, 307, 316, 897, 1161, 1183
Hpy188III TCNNGA 8 cut(s) 45, 287, 335, 447, 689, 917, 1255, 1262
Hpy8I GTNNAC 3 cut(s) 371, 715, 727
Hpy99I CGWCG 1 cut(s) 1256
HpyAV CCTTC 6 cut(s) 184, 587, 967, 1081, 1142, 1258
HpyCH4III ACNGT 1 cut(s) 764
HpyCH4IV ACGT 1 cut(s) 1266
HpyCH4V TGCA 7 cut(s) 87, 394, 611, 755, 830, 872, 1211
HpyF3I CTNAG 3 cut(s) 647, 1180, 1282
HpySE526I ACGT 1 cut(s) 1266
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 7 cut(s) 15, 398, 422, 639, 671, 692, 796
HspAI GCGC 3 cut(s) 112, 428, 745
KasI GGCGCC 1 cut(s) 111
Kzo9I GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
LmnI GCTCC 3 cut(s) 20, 828, 1129
Lsp1109I GCAGC 3 cut(s) 502, 595, 1144
LweI GCATC 1 cut(s) 1021
MaeI CTAG 6 cut(s) 45, 405, 461, 917, 1046, 1190
MaeII ACGT 1 cut(s) 1266
MaeIII GTNAC 6 cut(s) 124, 758, 941, 983, 1198, 1255
MalI GATC 8 cut(s) 10, 296, 411, 508, 537, 654, 675, 994
MboI GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
MboII GAAGA 6 cut(s) 79, 393, 488, 917, 1040, 1250
MflI RGATCY 1 cut(s) 992
MhlI GDGCHC 1 cut(s) 825
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 1 cut(s) 1252
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 4 cut(s) 13, 146, 253, 454
MroXI GAANNNNTTC 2 cut(s) 71, 1242
MseI TTAA 4 cut(s) 623, 696, 843, 1319
MslI CAYNNNNRTG 2 cut(s) 417, 765
MspI CCGG 2 cut(s) 931, 1017
MspR9I CCNGG 1 cut(s) 932
Mva1269I GAATGC 1 cut(s) 1213
MvnI CGCG 1 cut(s) 747
NarI GGCGCC 1 cut(s) 112
NciI CCSGG 1 cut(s) 932
NdeI CATATG 1 cut(s) 962
NdeII GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
NlaIII CATG 7 cut(s) 15, 398, 422, 639, 671, 692, 796
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 4 cut(s) 124, 758, 1198, 1255
OliI CACNNNNGTG 1 cut(s) 765
PaeR7I CTCGAG 1 cut(s) 445
PagI TCATGA 1 cut(s) 688
PctI GAATGC 1 cut(s) 1213
PdmI GAANNNNTTC 2 cut(s) 71, 1242
PfeI GAWTC 6 cut(s) 72, 398, 479, 884, 1227, 1278
PflFI GACNNNGTC 1 cut(s) 794
PflMI CCANNNNNTGG 2 cut(s) 377, 1126
PkrI GCNGC 3 cut(s) 517, 610, 1134
Ple19I CGATCG 1 cut(s) 509
PleI GAGTC 1 cut(s) 1252
PluTI GGCGCC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 1252
PshBI ATTAAT 1 cut(s) 843
PsiI TTATAA 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 825
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 4 cut(s) 250, 368, 999, 1019
PstI CTGCAG 3 cut(s) 613, 757, 832
PsuI RGATCY 1 cut(s) 992
PsyI GACNNNGTC 1 cut(s) 794
PvuI CGATCG 1 cut(s) 509
RsaI GTAC 1 cut(s) 1312
RsaNI GTAC 1 cut(s) 1311
RseI CAYNNNNRTG 2 cut(s) 417, 765
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 4 cut(s) 623, 696, 843, 1319
SatI GCNGC 3 cut(s) 516, 609, 1133
Sau3AI GATC 8 cut(s) 8, 294, 409, 506, 535, 652, 673, 992
Sau96I GGNCC 4 cut(s) 250, 368, 999, 1019
SbfI CCTGCAGG 1 cut(s) 757
SchI GAGTC 1 cut(s) 1252
ScrFI CCNGG 1 cut(s) 932
SdaI CCTGCAGG 1 cut(s) 757
SduI GDGCHC 1 cut(s) 825
SfaNI GCATC 1 cut(s) 1021
SfcI CTRYAG 3 cut(s) 609, 753, 828
SfoI GGCGCC 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 445
SinI GGWCC 4 cut(s) 250, 368, 999, 1019
SlaI CTCGAG 1 cut(s) 445
SmiI ATTTAAAT 1 cut(s) 624
SmiMI CAYNNNNRTG 2 cut(s) 417, 765
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse8387I CCTGCAGG 1 cut(s) 757
SsiI CCGC 2 cut(s) 267, 838
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 6 cut(s) 45, 405, 461, 917, 1046, 1190
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 1 cut(s) 930
StyI CCWWGG 1 cut(s) 1002
SwaI ATTTAAAT 1 cut(s) 624
TaaI ACNGT 1 cut(s) 764
TaiI ACGT 1 cut(s) 1269
TaqI TCGA 3 cut(s) 446, 482, 505
TfiI GAWTC 6 cut(s) 72, 398, 479, 884, 1227, 1278
Tru1I TTAA 4 cut(s) 623, 696, 843, 1319
Tru9I TTAA 4 cut(s) 623, 696, 843, 1319
TscAI CASTG 4 cut(s) 734, 767, 879, 1203
TseFI GTSAC 4 cut(s) 124, 758, 1198, 1255
TseI GCWGC 3 cut(s) 515, 608, 1132
Tsp45I GTSAC 4 cut(s) 124, 758, 1198, 1255
TspDTI ATGAA 7 cut(s) 237, 363, 411, 449, 867, 897, 986
TspGWI ACGGA 1 cut(s) 732
TspRI CASTG 4 cut(s) 734, 767, 879, 1203
Tth111I GACNNNGTC 1 cut(s) 794
Van91I CCANNNNNTGG 2 cut(s) 377, 1126
VpaK11BI GGWCC 4 cut(s) 250, 368, 999, 1019
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 5 cut(s) 360, 452, 625, 912, 1007
XbaI TCTAGA 2 cut(s) 44, 916
XhoI CTCGAG 1 cut(s) 445
XmnI GAANNNNTTC 2 cut(s) 71, 1242
XspI CTAG 6 cut(s) 45, 405, 461, 917, 1046, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.