FvH4_1g17330

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004567
Physical Location & Seq
Reverse (-)
10020200 .. 10020813
614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17330.t1

Sequence Viewer

Length: 471 bp
ATGAAGGGAAATATGGCATGTCACTACTTGTTCCTTTTCACCCTCTTCTTCCTTGCATTAGCCTCGTCGGTGCAAAGTGCTGAGGAAGAAGAAACCATAGCCCTACCGGGGCACAAGTATTTCATTCGCCTTACCAACAATCTCAGTGGTTCAGCAGTACTCCACTTTGCATGTAGGTCAACTGAGGATGTAATTACTCGTGACCTCGCTCCCAATGCCCAATTTGAGTTCGAATTTCGCTACAATCCTGTTGCTACAGACTGGAACTGCTATATGGGGTACAATATAACTCAGGGTCAGCTACGTGCAGGTGGTTTTCATGCATGGTCATCAGGCAATGTTCCTAAGTATGGGGGAGTCCATGCGATATGGAGTATACGAGACTCTGGATTCTGGTTGTTCCACATAAAATCTGGTCAATATACCCTAGAGAACAGCTGGAGGACAAGCGTAGCTGTGTCGCCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

157

Amino Acids

17.6

Weight (kDa)

6.57

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 42 - 147 6.1e-12 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 2 cut(s) 159, 281
AfiI CCNNNNNNNGG 2 cut(s) 108, 350
AluBI AGCT 3 cut(s) 301, 438, 455
AluI AGCT 3 cut(s) 301, 438, 455
Alw26I GTCTC 1 cut(s) 375
ApoI RAATTY 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 114
BauI CACGAG 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 350
Bse1I ACTGG 2 cut(s) 266, 464
Bse3DI GCAATG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 108, 350
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 4 cut(s) 72, 157, 174, 305
BseNI ACTGG 2 cut(s) 266, 464
BseSI GKGCMC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 108, 350
BsmAI GTCTC 1 cut(s) 375
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 114
BspCNI CTCAG 4 cut(s) 73, 156, 175, 304
BspMI ACCTGC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 2 cut(s) 266, 464
BssECI CCNNGG 1 cut(s) 107
BssNAI GTATAC 1 cut(s) 377
BssSI CACGAG 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 231
BstDEI CTNAG 5 cut(s) 81, 143, 183, 291, 345
BstF5I GGATG 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 2 cut(s) 21, 174
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 114
BstZ17I GTATAC 1 cut(s) 377
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 151, 471
BveI ACCTGC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 158, 280
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 5 cut(s) 18, 171, 320, 324, 362
CviJI RGCY 5 cut(s) 62, 101, 301, 438, 455
CviKI_1 RGCY 5 cut(s) 62, 101, 301, 438, 455
CviQI GTAC 2 cut(s) 158, 280
DdeI CTNAG 5 cut(s) 81, 143, 183, 291, 345
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 325
FaeI CATG 5 cut(s) 21, 174, 323, 327, 365
FatI CATG 5 cut(s) 17, 170, 319, 323, 361
FblI GTMKAC 1 cut(s) 376
FokI GGATG 1 cut(s) 200
FspBI CTAG 1 cut(s) 428
GsuI CTGGAG 1 cut(s) 460
HapII CCGG 1 cut(s) 107
Hin1II CATG 5 cut(s) 21, 174, 323, 327, 365
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 3 cut(s) 357, 383, 390
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 180, 377
Hpy188III TCNNGA 2 cut(s) 200, 387
Hpy8I GTNNAC 2 cut(s) 180, 377
Hpy99I CGWCG 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 56, 73, 170, 308, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 5 cut(s) 81, 143, 183, 291, 345
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 5 cut(s) 21, 174, 323, 327, 365
LmnI GCTCC 1 cut(s) 214
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 2 cut(s) 20, 200
MboII GAAGA 4 cut(s) 37, 40, 98, 101
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 192, 221, 233
MlyI GAGTC 2 cut(s) 366, 377
MnlI CCTC 6 cut(s) 53, 73, 76, 178, 215, 435
Mph1103I ATGCAT 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 108
NlaIII CATG 5 cut(s) 21, 174, 323, 327, 365
NmuCI GTSAC 2 cut(s) 20, 200
NsiI ATGCAT 1 cut(s) 325
NspI RCATGY 2 cut(s) 21, 174
NspV TTCGAA 1 cut(s) 231
PaqCI CACCTGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 390
PleI GAGTC 2 cut(s) 365, 377
PpsI GAGTC 2 cut(s) 365, 377
Ppu21I YACGTR 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 438
RsaI GTAC 2 cut(s) 159, 281
RsaNI GTAC 2 cut(s) 158, 280
ScaI AGTACT 1 cut(s) 159
SchI GAGTC 2 cut(s) 366, 377
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 114
SetI ASST 7 cut(s) 179, 207, 303, 307, 313, 440, 457
SfcI CTRYAG 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 231
Sse9I AATT 3 cut(s) 192, 221, 233
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 106
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 192, 221, 233
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 390
TscAI CASTG 2 cut(s) 151, 471
TseFI GTSAC 2 cut(s) 20, 200
Tsp45I GTSAC 2 cut(s) 20, 200
TspDTI ATGAA 3 cut(s) 17, 112, 308
TspRI CASTG 2 cut(s) 151, 471
XapI RAATTY 1 cut(s) 233
XceI RCATGY 2 cut(s) 21, 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.