Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004567

Physical Location & Seq

Genomic Coordinates Reverse (-)

48946255 .. 48946536

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG232900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGGGAAAGAAAACAGCATGGAAGTTTTATTGTTTTGTGCTCTTTCTTGCATTGGCCTTCAGGCCAAATAGCAGTAAGGAGGCATTACTTGGGAGAAAGTATTTCATGCGTGTCGTTAACAATCTCGGCGCCGGTGAACAACTTGTGTTCAAGTGTCTATCCAATGATGATACTATTGGTCCTAGTCCTCTCCCTCCAAATGAGCGATTTGAATTTGGTTTTCTTCTTGGCTTAGACACCAGTTTAGAATGCGCGCAATGGGTGGTACTCGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

93

Amino Acids

10.54

Weight (kDa)

8.52

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08560 AT5G43090 AT5G43110
fragaria_vesca	FvH4_1g17330 FvH4_4g05642 FvH4_6g00810
prunus_persica	Prupe.1G043900_v2.0.a1 Prupe.1G059500_v2.0.a1 Prupe.1G059700_v2.0.a1 Prupe.1G060000_v2.0.a1 Prupe.1G060100_v2.0.a1 Prupe.4G236000_v2.0.a1
pyrus_communis	pycom05g24890
rosa_chinensis	RchiOBHm_Chr3g0448291 RchiOBHm_Chr3g0448331
rosa_laevigata	RLG00000017575 RLG00000017576 RLG00000025927
rosa_multiflora	Rmu_sc0007168.1_g000011 Rmu_sc0010952.1_g000002
rosa_roxburghii	Rroxscaffold_4G00301640 Rroxscaffold_5G00341650
rosa_rugosa	Rorug02G0610600 Rorug03G0347600
rosa_samantha	Rh1CG232900 Rh2AG193400 Rh3AG010100 Rh3BG009700 Rh3CG009600 Rh3DG010200
rosa_wichuraiana	Rw3G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccII	CGCG	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	154, 215
Alw21I	GWGCWC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	57, 65
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	3 cut(s)	134, 257, 259
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	243
BsePI	GCGCGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	59, 67
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	59, 67
Bsp1286I	GDGCHC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	59, 67
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	134
BssHII	GCGCGC	1 cut(s)	255
BssNI	GRCGYC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	3 cut(s)	134, 257, 259
BstUI	CGCG	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	59, 67
Cac8I	GCNNGC	1 cut(s)	257
CfoI	GCGC	3 cut(s)	134, 257, 259
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	2 cut(s)	21, 109
CviJI	RGCY	3 cut(s)	59, 67, 234
CviKI_1	RGCY	3 cut(s)	59, 67, 234
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	235
DinI	GGCGCC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	2 cut(s)	24, 112
FaiI	YATR	3 cut(s)	22, 110, 280
FatI	CATG	2 cut(s)	20, 108
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	3 cut(s)	133, 256, 258
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	59, 67
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	3 cut(s)	134, 257, 259
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	24, 112
Hin6I	GCGC	3 cut(s)	132, 255, 257
HinP1I	GCGC	3 cut(s)	132, 255, 257
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	121, 140
Hpy8I	GTNNAC	2 cut(s)	121, 140
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	24, 112
HspAI	GCGC	3 cut(s)	132, 255, 257
KasI	GGCGCC	1 cut(s)	131
KspAI	GTTAAC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	49, 148, 256
MaeI	CTAG	1 cut(s)	186
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	215, 275
Mly113I	GGCGCC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	76, 201, 207
MseI	TTAA	1 cut(s)	120
MspI	CCGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	257
MvnI	CGCG	1 cut(s)	257
NarI	GGCGCC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	24, 112
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	108
PauI	GCGCGC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	257
PluTI	GGCGCC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	182
PteI	GCGCGC	1 cut(s)	255
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	45
SfoI	GGCGCC	1 cut(s)	133
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	2 cut(s)	215, 275
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	186
TaqI	TCGA	1 cut(s)	273
TasI	AATT	2 cut(s)	215, 275
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	17, 97
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.