Rh3AG010100

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004567
Physical Location & Seq
Forward (+)
634378 .. 635079
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG010100.1

Sequence Viewer

Length: 408 bp
ATGAAGCTGGGACAAATTTGCTGTGTTGTCTTGCTCATTGCTCTAGCCTTTGGTTCAAGCAATGCATCGATAAACTTTCCTGGGACAAAGAAATTTGTACGCATTGTCAACAATCTAAGCAAAGGAGAAAGACTTAATTTTCATTGTCAATCTAAAGACAACGATATTGGTGTTCGCAGTCTTGCTGTCAATGAGCAATACGAATTTAGCTTTCGGATCAACATCTGGCGAACCACACTTTTCTTTTGCCGTTTATGGTATTCCGACAAGCATGCAAAATTTGTTGCATTTAAAGTTTCTTATGATTTTTATCAAGATTGTGGCAACCAAGATCATTGCATATGGACAGCCAAAGAGGATGGAGTATACTTGAAAGATGAATTGGAAATTTTTTGGGTAAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

135

Amino Acids

15.77

Weight (kDa)

8.53

Isoelectric Point (pI)

20.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 33 - 126 1.2e-28 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 366
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 5 cut(s) 15, 92, 203, 278, 387
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 2 cut(s) 57, 373
AjnI CCWGG 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 2 cut(s) 7, 210
AluI AGCT 2 cut(s) 7, 210
AlwI GGATC 1 cut(s) 224
ApoI RAATTY 5 cut(s) 15, 92, 203, 278, 387
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 234
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 81
BfaI CTAG 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 74
Bsa29I ATCGAT 1 cut(s) 68
BsaBI GATNNNNATC 2 cut(s) 221, 309
BsaJI CCNNGG 1 cut(s) 80
Bse3DI GCAATG 3 cut(s) 36, 67, 334
Bse8I GATNNNNATC 2 cut(s) 221, 309
BseBI CCWGG 1 cut(s) 81
BseCI ATCGAT 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 364
BseJI GATNNNNATC 2 cut(s) 221, 309
BseMI GCAATG 3 cut(s) 36, 67, 334
BseYI CCCAGC 1 cut(s) 7
BshVI ATCGAT 1 cut(s) 68
BslFI GGGAC 2 cut(s) 24, 97
BsmFI GGGAC 2 cut(s) 24, 97
Bsp143I GATC 2 cut(s) 216, 331
BspDI ATCGAT 1 cut(s) 68
BspPI GGATC 1 cut(s) 224
BsrDI GCAATG 3 cut(s) 36, 67, 334
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 2 cut(s) 216, 331
BssNAI GTATAC 1 cut(s) 367
Bst1107I GTATAC 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 2 cut(s) 219, 334
BstMBI GATC 2 cut(s) 216, 331
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 79
BstZ17I GTATAC 1 cut(s) 367
Bsu15I ATCGAT 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 68
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 273
ClaI ATCGAT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 98
CviAII CATG 1 cut(s) 272
CviJI RGCY 4 cut(s) 7, 47, 210, 350
CviKI_1 RGCY 4 cut(s) 7, 47, 210, 350
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 116
DpnI GATC 2 cut(s) 218, 333
DpnII GATC 2 cut(s) 216, 331
DraI TTTAAA 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 67
FaeI CATG 1 cut(s) 275
FaiI YATR 6 cut(s) 256, 273, 303, 341, 343, 367
FaqI GGGAC 2 cut(s) 24, 97
FatI CATG 1 cut(s) 271
FauNDI CATATG 1 cut(s) 341
FblI GTMKAC 1 cut(s) 366
FokI GGATG 1 cut(s) 371
FspBI CTAG 1 cut(s) 44
GsaI CCCAGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 109, 367
Hpy188I TCNGA 2 cut(s) 216, 265
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 2 cut(s) 109, 367
HpyCH4V TGCA 4 cut(s) 65, 275, 287, 339
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 2 cut(s) 216, 331
LpnPI CCDG 3 cut(s) 66, 93, 211
LweI GCATC 1 cut(s) 74
MaeI CTAG 1 cut(s) 44
MalI GATC 2 cut(s) 218, 333
MboI GATC 2 cut(s) 216, 331
MluCI AATT 8 cut(s) 15, 92, 136, 203, 278, 380, 387, 403
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 3 cut(s) 135, 291, 406
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 341
NdeII GATC 2 cut(s) 216, 331
NlaIII CATG 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 1 cut(s) 275
PaeI GCATGC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 79
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 3 cut(s) 135, 291, 406
Sau3AI GATC 2 cut(s) 216, 331
ScrFI CCNGG 1 cut(s) 81
SetI ASST 2 cut(s) 9, 212
SfaNI GCATC 1 cut(s) 74
SphI GCATGC 1 cut(s) 275
Sse9I AATT 8 cut(s) 15, 92, 136, 203, 278, 380, 387, 403
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 68
TasI AATT 8 cut(s) 15, 92, 136, 203, 278, 380, 387, 403
Tru1I TTAA 3 cut(s) 135, 291, 406
Tru9I TTAA 3 cut(s) 135, 291, 406
TspDTI ATGAA 3 cut(s) 17, 131, 393
XapI RAATTY 5 cut(s) 15, 92, 203, 278, 387
XceI RCATGY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.