Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004567

Physical Location & Seq

Genomic Coordinates Reverse (-)

4922317 .. 4925993

Gene Structure 3677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05642.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAAAGGCATTGGGGCAGCTATACTGTTTTCTGCTTTTCCTTGTCTTAGTGCTTGGGCCAAGTAGCAGTTTGATCGGAAAAAAGTATTTCGTGCGTATTGTTAACAATCTCAAAAACAACGAAGTTCTTAACTACCAATGTCAATCAGACGATGATGTAATTGGTCCTCATGCTCTTCCTCCACTTGGGGAATTCGAATTTAAATTCCACCTCATCCTGGATACACACTTTGAATGCGCTACATGGTACTCGAATCGCATGGCTAATTTTACAGCACTCAATGAAAAACTCGCAGACAGTTGCGGCGGGGTGCATTGTATTTACAATGCGCAATCTGTTGCATTGTTTAGACGGCATAAGCCTAAGTCGAGTGGGAAGGAGGACGGTACGCCACCGCAGTCAACGTCGAAAACTTCGAATTCGGCTTCCACAGTGGAATCAAATCGACAACACCTCCTTGCTGGAGGTCTTCATGAGAAACTGCAATCCAGATTTGAAGACCACGACGACGGAGAGAGAAATAGAAGGCGAAGGTGGGACGATGCAGCTCAGGGATTTCAACTTGAAGGCGAATCAGGTGAGGTTCGATTCGAGTCCCAATATGTCGGTTTCCTCACCGGTGACGAAGCAGTAGGCGGCGGCGGCCAAGCAATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

221

Amino Acids

24.46

Weight (kDa)

6.06

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	32 - 122	1e-14	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08560 AT5G43090 AT5G43110
fragaria_vesca	FvH4_1g17330 FvH4_4g05642 FvH4_6g00810
prunus_persica	Prupe.1G043900_v2.0.a1 Prupe.1G059500_v2.0.a1 Prupe.1G059700_v2.0.a1 Prupe.1G060000_v2.0.a1 Prupe.1G060100_v2.0.a1 Prupe.4G236000_v2.0.a1
pyrus_communis	pycom05g24890
rosa_chinensis	RchiOBHm_Chr3g0448291 RchiOBHm_Chr3g0448331
rosa_laevigata	RLG00000017575 RLG00000017576 RLG00000025927
rosa_multiflora	Rmu_sc0007168.1_g000011 Rmu_sc0010952.1_g000002
rosa_roxburghii	Rroxscaffold_4G00301640 Rroxscaffold_5G00341650
rosa_rugosa	Rorug02G0610600 Rorug03G0347600
rosa_samantha	Rh1CG232900 Rh2AG193400 Rh3AG010100 Rh3BG009700 Rh3CG009600 Rh3DG010200
rosa_wichuraiana	Rw3G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	333
AciI	CCGC	6 cut(s)	306, 309, 398, 639, 642, 645
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	4 cut(s)	194, 200, 206, 421
AfaI	GTAC	2 cut(s)	251, 391
AfiI	CCNNNNNNNGG	2 cut(s)	188, 220
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	5 cut(s)	236, 500, 563, 569, 659
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	2 cut(s)	22, 551
AluI	AGCT	2 cut(s)	22, 551
AoxI	GGCC	2 cut(s)	59, 646
ApeKI	GCWGC	2 cut(s)	19, 548
ApoI	RAATTY	4 cut(s)	194, 200, 206, 421
AsiGI	ACCGGT	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	242, 334
AspS9I	GGNCC	2 cut(s)	59, 167
AsuHPI	GGTGA	3 cut(s)	593, 610, 635
AsuII	TTCGAA	2 cut(s)	198, 419
AvaII	GGWCC	1 cut(s)	167
BbsI	GAAGAC	2 cut(s)	464, 507
BbvI	GCAGC	2 cut(s)	31, 560
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	6 cut(s)	20, 307, 549, 640, 643, 646
BlsI	GCNGC	6 cut(s)	21, 308, 550, 641, 644, 647
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	59, 167
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	2 cut(s)	464, 507
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	2 cut(s)	198, 419
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 220
Bse118I	RCCGGY	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	188, 220
BseMII	CTCAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	31, 560
BshFI	GGCC	2 cut(s)	61, 648
BshTI	ACCGGT	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	2 cut(s)	554, 583
BslI	CCNNNNNNNGG	2 cut(s)	188, 220
BsmFI	GGGAC	2 cut(s)	554, 583
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	61, 648
Bsp119I	TTCGAA	2 cut(s)	198, 419
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	6 cut(s)	306, 309, 398, 639, 642, 645
BspANI	GGCC	2 cut(s)	61, 648
BspCNI	CTCAG	1 cut(s)	565
BspHI	TCATGA	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	183
BspT104I	TTCGAA	2 cut(s)	198, 419
BsrFI	RCCGGY	1 cut(s)	620
BssAI	RCCGGY	1 cut(s)	620
BssMI	GATC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	4 cut(s)	29, 302, 389, 436
Bst6I	CTCTTC	1 cut(s)	183
BstBI	TTCGAA	2 cut(s)	198, 419
BstDEI	CTNAG	3 cut(s)	49, 366, 552
BstF5I	GGATG	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	242, 334
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	645
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	31, 560
BstV2I	GAAGAC	2 cut(s)	464, 507
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	61, 648
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	441
CciI	TCATGA	1 cut(s)	475
CfoI	GCGC	2 cut(s)	242, 334
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	59, 167
Csp6I	GTAC	2 cut(s)	250, 390
CspAI	ACCGGT	1 cut(s)	620
CviAII	CATG	4 cut(s)	173, 246, 262, 476
CviJI	RGCY	7 cut(s)	22, 61, 266, 364, 428, 551, 648
CviKI_1	RGCY	7 cut(s)	22, 61, 266, 364, 428, 551, 648
CviQI	GTAC	2 cut(s)	250, 390
DdeI	CTNAG	3 cut(s)	49, 366, 552
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraI	TTTAAA	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	167
EcoRI	GAATTC	2 cut(s)	194, 421
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	4 cut(s)	176, 249, 265, 479
FaiI	YATR	7 cut(s)	25, 174, 247, 263, 360, 477, 606
FaqI	GGGAC	2 cut(s)	554, 583
FatI	CATG	4 cut(s)	172, 245, 261, 475
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	6 cut(s)	20, 307, 549, 640, 643, 646
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	6 cut(s)	20, 307, 549, 640, 643, 646
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	2 cut(s)	241, 333
GluI	GCNGC	6 cut(s)	20, 307, 549, 640, 643, 646
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	61, 648
HapII	CCGG	1 cut(s)	621
HhaI	GCGC	2 cut(s)	242, 334
Hin1II	CATG	4 cut(s)	176, 249, 265, 479
Hin6I	GCGC	2 cut(s)	240, 332
HinP1I	GCGC	2 cut(s)	240, 332
HincII	GTYRAC	2 cut(s)	106, 405
HindII	GTYRAC	2 cut(s)	106, 405
HinfI	GANTC	5 cut(s)	256, 440, 575, 591, 596
HpaI	GTTAAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	3 cut(s)	593, 610, 635
Hpy166II	GTNNAC	2 cut(s)	106, 405
Hpy188I	TCNGA	2 cut(s)	80, 151
Hpy188III	TCNNGA	2 cut(s)	476, 492
Hpy8I	GTNNAC	2 cut(s)	106, 405
Hpy99I	CGWCG	3 cut(s)	412, 512, 515
HpyAV	CCTTC	4 cut(s)	373, 522, 528, 563
HpyCH4III	ACNGT	4 cut(s)	29, 302, 389, 436
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	316, 344, 487, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	645
HpyF3I	CTNAG	3 cut(s)	49, 366, 552
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	176, 249, 265, 479
HspAI	GCGC	2 cut(s)	240, 332
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	183
LpnPI	CCDG	7 cut(s)	206, 233, 450, 505, 539, 564, 634
Lsp1109I	GCAGC	2 cut(s)	31, 560
LweI	GCATC	1 cut(s)	535
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	3 cut(s)	170, 464, 512
MluCI	AATT	7 cut(s)	162, 194, 200, 206, 268, 421, 654
MlyI	GAGTC	1 cut(s)	605
MnlI	CCTC	8 cut(s)	180, 192, 224, 376, 461, 467, 577, 626
MseI	TTAA	3 cut(s)	105, 132, 204
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	645
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	4 cut(s)	176, 249, 265, 479
NmuCI	GTSAC	1 cut(s)	623
NsbI	TGCGCA	1 cut(s)	333
NspV	TTCGAA	2 cut(s)	198, 419
PagI	TCATGA	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	256, 440, 575, 591
PfoI	TCCNGGA	1 cut(s)	219
PinAI	ACCGGT	1 cut(s)	620
PkrI	GCNGC	6 cut(s)	21, 308, 550, 641, 644, 647
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	59, 167
RsaI	GTAC	2 cut(s)	251, 391
RsaNI	GTAC	2 cut(s)	250, 390
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	105, 132, 204
SatI	GCNGC	6 cut(s)	20, 307, 549, 640, 643, 646
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	59, 167
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	9 cut(s)	24, 216, 410, 459, 472, 539, 553, 583, 588
SfaNI	GCATC	1 cut(s)	535
SfuI	TTCGAA	2 cut(s)	198, 419
SgrAI	CRCCGGYG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	167
SmiI	ATTTAAAT	1 cut(s)	205
Sse9I	AATT	7 cut(s)	162, 194, 200, 206, 268, 421, 654
SsiI	CCGC	6 cut(s)	306, 309, 398, 639, 642, 645
StyD4I	CCNGG	1 cut(s)	219
SwaI	ATTTAAAT	1 cut(s)	205
TaaI	ACNGT	4 cut(s)	29, 302, 389, 436
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	8 cut(s)	198, 254, 371, 410, 419, 448, 589, 594
TasI	AATT	7 cut(s)	162, 194, 200, 206, 268, 421, 654
TauI	GCSGC	4 cut(s)	309, 642, 645, 648
TfiI	GAWTC	4 cut(s)	256, 440, 575, 591
Tru1I	TTAA	3 cut(s)	105, 132, 204
Tru9I	TTAA	3 cut(s)	105, 132, 204
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	2 cut(s)	19, 548
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	2 cut(s)	300, 464
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	4 cut(s)	194, 200, 206, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.