RLG00000017575

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004567
Physical Location & Seq
Reverse (-)
18422974 .. 18424243
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017575

Sequence Viewer

Length: 378 bp
ATGAAGAAGTTGTGTTGGTCAGCTTATGATACTATTGGCCCCCGTGAGCTTGCTCCCAATCAACAATGGGAATTCAGATTCCGGCTATCCTCCGGAACATTCTTCCGCTGCGTGACGTGGTTCCAGAGTAGCACCATGGGTCTGAATCTCTCCTCTAACTTTGACGGGTTTAGACCTGCTGATGTTCCTTCAATCCTTCATATGGTGGAGTCCATGCGATATGGAGCGCAAGAAACACCGGAATGTGGTTGTATAACAGCGACAGTGGTCAATATACCTTTAAGTCTTATTGGTGAACAAGATTGGCTTGGTGTAGTTTTATTTCTTAATCACAAAGAGACTCCTGAGTCTTATCTGCCTCCTACCATATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

5.26

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 184
AccIII TCCGGA 1 cut(s) 92
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 202, 245
AgsI TTSAA 1 cut(s) 192
AjiI CACGTC 1 cut(s) 117
AluBI AGCT 2 cut(s) 23, 49
AluI AGCT 2 cut(s) 23, 49
Alw26I GTCTC 1 cut(s) 332
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 305
BbvI GCAGC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 40, 122
BoxI GACNNNNGTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 92, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 245
BseAI TCCGGA 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 202, 245
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 39
BsiSI CCGG 3 cut(s) 82, 93, 239
BslI CCNNNNNNNGG 2 cut(s) 202, 245
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 337
BspEI TCCGGA 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 40, 122
BspMI ACCTGC 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 332
BstPAI GACNNNNGTC 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 2 cut(s) 136, 214
CviJI RGCY 5 cut(s) 23, 39, 49, 85, 307
CviKI_1 RGCY 5 cut(s) 23, 39, 49, 85, 307
DdeI CTNAG 1 cut(s) 345
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 139, 217
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 2 cut(s) 135, 213
FauNDI CATATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 109
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 82, 93, 239
HhaI GCGC 1 cut(s) 229
Hin1II CATG 2 cut(s) 139, 217
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 5 cut(s) 78, 145, 209, 340, 347
HpaII CCGG 3 cut(s) 82, 93, 239
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 2 cut(s) 77, 144
Hpy188III TCNNGA 3 cut(s) 93, 124, 344
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 198, 206
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 139, 217
HspAI GCGC 1 cut(s) 227
Kpn2I TCCGGA 1 cut(s) 92
LmnI GCTCC 2 cut(s) 58, 224
LpnPI CCDG 6 cut(s) 95, 106, 137, 189, 252, 357
Lsp1109I GCAGC 1 cut(s) 95
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 2 cut(s) 16, 94
MluCI AATT 1 cut(s) 71
MlyI GAGTC 3 cut(s) 218, 334, 356
MnlI CCTC 3 cut(s) 100, 163, 369
MroI TCCGGA 1 cut(s) 92
MseI TTAA 2 cut(s) 281, 327
MslI CAYNNNNRTG 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 3 cut(s) 82, 93, 239
NcoI CCATGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 201
NlaIII CATG 2 cut(s) 139, 217
NlaIV GGNNCC 2 cut(s) 40, 122
NmuCI GTSAC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 78, 145
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 3 cut(s) 217, 334, 355
PpsI GAGTC 3 cut(s) 217, 334, 355
PshAI GACNNNNGTC 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 40, 122
PspPI GGNCC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 2 cut(s) 281, 327
SatI GCNGC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 3 cut(s) 218, 334, 356
SetI ASST 5 cut(s) 25, 51, 119, 178, 280
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 1 cut(s) 71
SsiI CCGC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 119
TasI AATT 1 cut(s) 71
TfiI GAWTC 2 cut(s) 78, 145
Tru1I TTAA 2 cut(s) 281, 327
Tru9I TTAA 2 cut(s) 281, 327
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 17, 188
TspRI CASTG 1 cut(s) 270
XapI RAATTY 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.