pycom05g24890

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0004567
Physical Location & Seq
Forward (+)
26382691 .. 26383116
426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24890.1

Sequence Viewer

Length: 426 bp
ATGAAGGGAAATACAGTTATGCAGTTGTTCTATTTATCGCTCTTCGTTGCTTTGGCATTTGGCCCGAGTGCCACCGCAGGTTTATGGCCTGGTCGAAAGCGCTTTGTGCGTATTGTTAACAATCTTGGCAACAACCAACAACTCACATACCATTGCTGGTCACAGGACGATGATCTTGGTGTTCGTTATCTTCCACCCAACCAGGAGTGGGAATGGAAATTTCACCTCGACTTCGAGTCAATTTGGGATTGCGATTTCTCATACTCGAATTACCATGCTCATAAGATCAATGTATTCTTTCCGAGTGATAAGTTTATTGGCAGGTGTGGGGCGGCTCATTGCATATGGAAAGCGGAAGATCAAGGACTGTCCTTATTCCACATCAAGGGGAATTTCTGGGAAAAGGTTTATGACTGGCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.62

Weight (kDa)

6.57

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 36 - 139 1.4e-24 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 312
Acc36I ACCTGC 2 cut(s) 68, 312
AciI CCGC 3 cut(s) 75, 332, 353
AcsI RAATTY 2 cut(s) 218, 391
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 208, 385
AhdI GACNNNNNGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 88, 201
Ama87I CYCGRG 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 2 cut(s) 61, 86
ApoI RAATTY 2 cut(s) 218, 391
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 90, 203
BfoI RGCGCY 1 cut(s) 103
BfuAI ACCTGC 2 cut(s) 68, 312
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 2 cut(s) 90, 203
BmeRI GACNNNNNGTC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 90, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 385
Bse1I ACTGG 1 cut(s) 419
Bse3DI GCAATG 2 cut(s) 151, 337
BseBI CCWGG 2 cut(s) 90, 203
BseLI CCNNNNNNNGG 2 cut(s) 208, 385
BseMI GCAATG 2 cut(s) 151, 337
BseNI ACTGG 1 cut(s) 419
BshFI GGCC 2 cut(s) 63, 88
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 208, 385
BsnI GGCC 2 cut(s) 63, 88
BsoBI CYCGRG 1 cut(s) 64
Bsp143I GATC 3 cut(s) 172, 285, 358
BspACI CCGC 3 cut(s) 75, 332, 353
BspANI GGCC 2 cut(s) 63, 88
BspMI ACCTGC 2 cut(s) 68, 312
BspQI GCTCTTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 151, 337
BsrI ACTGG 1 cut(s) 419
BssMI GATC 3 cut(s) 172, 285, 358
Bst2UI CCWGG 2 cut(s) 90, 203
Bst4CI ACNGT 2 cut(s) 16, 369
Bst6I CTCTTC 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 3 cut(s) 175, 288, 361
BstMBI GATC 3 cut(s) 172, 285, 358
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 90, 203
BstSCI CCNGG 2 cut(s) 88, 201
BsuRI GGCC 2 cut(s) 63, 88
BveI ACCTGC 2 cut(s) 68, 312
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 2 cut(s) 275, 423
CviJI RGCY 3 cut(s) 63, 88, 335
CviKI_1 RGCY 3 cut(s) 63, 88, 335
DpnI GATC 3 cut(s) 174, 287, 360
DpnII GATC 3 cut(s) 172, 285, 358
DriI GACNNNNNGTC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 47
Eco47III AGCGCT 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 88, 201
FaeI CATG 2 cut(s) 278, 426
FatI CATG 2 cut(s) 274, 422
FauNDI CATATG 1 cut(s) 344
Fnu4HI GCNGC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 333
GlaI GCGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 2 cut(s) 63, 88
HhaI GCGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 278, 426
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 236
HpaI GTTAAC 1 cut(s) 118
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 303
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 16, 369
HpyCH4V TGCA 2 cut(s) 22, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 2 cut(s) 278, 426
HspAI GCGC 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 172, 285, 358
LguI GCTCTTC 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 159
MalI GATC 3 cut(s) 174, 287, 360
MboI GATC 3 cut(s) 172, 285, 358
MboII GAAGA 3 cut(s) 34, 182, 368
MluCI AATT 4 cut(s) 218, 240, 268, 391
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 1 cut(s) 236
MseI TTAA 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 90, 203
MvaI CCWGG 2 cut(s) 90, 203
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeI CATATG 1 cut(s) 344
NdeII GATC 3 cut(s) 172, 285, 358
NlaIII CATG 2 cut(s) 278, 426
NmuCI GTSAC 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 88, 201
PspGI CCWGG 2 cut(s) 88, 201
PspPI GGNCC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 3 cut(s) 172, 285, 358
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 90, 203
SetI ASST 4 cut(s) 82, 228, 326, 408
Sse9I AATT 4 cut(s) 218, 240, 268, 391
SsiI CCGC 3 cut(s) 75, 332, 353
StyD4I CCNGG 2 cut(s) 88, 201
TaaI ACNGT 2 cut(s) 16, 369
TaqI TCGA 4 cut(s) 94, 228, 234, 266
TasI AATT 4 cut(s) 218, 240, 268, 391
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 218, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.