FvH4_6g00810

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004567
Physical Location & Seq
Reverse (-)
473694 .. 474809
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00810.t1

Sequence Viewer

Length: 387 bp
ATGAAGTTGGGACAAATTTACTGTGTTGTCTTGCTCTTTGCTCTAGCATTTCGTTCGGGTAATTCACAGTTGCCATGGACAAAGAAGTTTGTACGTATCGTCAACAATCTGAGCAATGGACAAAGACTTTATCACCATTGTGAATCTAAAGACGATGATCTTGGTGTTCATAGTCTTGCTGTTAATGAACAATATGAGTTTGGATTTCGGATCAACATTTGGCTTTCCACACTTTTTCATTGTCATATATGGTGGAAGGATAATCATTCAAGATTTCATCGACATATGAAGATCGAGGAACATGAGGAGGATGAGGAGAAAGAGGAGAAGTGTGGGTTATGCTTCTTCCTGAAAGGCAGCGGGTGCAAAGAGATCTTTGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

129

Amino Acids

15.19

Weight (kDa)

6.74

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 31 - 110 6.8e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 360
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 1 cut(s) 270
AleI CACNNNNGTG 1 cut(s) 138
AlwI GGATC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 125
BbvI GCAGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BfaI CTAG 1 cut(s) 44
BglII AGATCT 1 cut(s) 372
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 101
BseRI GAGGAG 3 cut(s) 320, 329, 338
BseXI GCAGC 1 cut(s) 369
BslFI GGGAC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 24
Bsp143I GATC 4 cut(s) 157, 210, 291, 372
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 4 cut(s) 157, 210, 291, 372
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 23, 69
BstAPI GCANNNNNTGC 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 4 cut(s) 160, 213, 294, 375
BstMBI GATC 4 cut(s) 157, 210, 291, 372
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstSNI TACGTA 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 316
Csp6I GTAC 1 cut(s) 92
CviAII CATG 3 cut(s) 75, 302, 384
CviJI RGCY 1 cut(s) 223
CviKI_1 RGCY 1 cut(s) 223
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 110
DpnI GATC 4 cut(s) 159, 212, 293, 374
DpnII GATC 4 cut(s) 157, 210, 291, 372
Eco105I TACGTA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 78, 305, 387
FaqI GGGAC 1 cut(s) 24
FatI CATG 3 cut(s) 74, 301, 383
FauI CCCGC 1 cut(s) 353
FauNDI CATATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 358
Hin1II CATG 3 cut(s) 78, 305, 387
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 143
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 111, 210
Hpy188III TCNNGA 2 cut(s) 270, 349
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 23, 69
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 78, 305, 387
Kzo9I GATC 4 cut(s) 157, 210, 291, 372
LpnPI CCDG 1 cut(s) 362
Lsp1109I GCAGC 1 cut(s) 369
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 94
MalI GATC 4 cut(s) 159, 212, 293, 374
MboI GATC 4 cut(s) 157, 210, 291, 372
MboII GAAGA 2 cut(s) 301, 337
MflI RGATCY 1 cut(s) 372
MluCI AATT 2 cut(s) 15, 61
MnlI CCTC 5 cut(s) 289, 298, 301, 307, 316
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 363
NcoI CCATGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 285
NdeII GATC 4 cut(s) 157, 210, 291, 372
NlaIII CATG 3 cut(s) 78, 305, 387
OliI CACNNNNGTG 1 cut(s) 138
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 95
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 4 cut(s) 157, 210, 291, 372
SetI ASST 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 138
SnaBI TACGTA 1 cut(s) 95
Sse9I AATT 2 cut(s) 15, 61
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 2 cut(s) 23, 69
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 280, 294
TasI AATT 2 cut(s) 15, 61
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 6 cut(s) 17, 158, 201, 227, 266, 302
XapI RAATTY 1 cut(s) 15
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.