Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004567

Physical Location & Seq

Genomic Coordinates Forward (+)

4211707 .. 4212147

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAACAAATGGAGGGAAAAGCAATGCAGCATTTCTGCTATTCTGTGCTCTTCTTGGCTTTGGCATTTGGCCCAAGTATGATCTGCTCTGGTCTTCCCATCATGACAAAGCGCTTTGTGCGCATTGTTAACTTGCTCGACAACAAGCAACTTGTCTACCATTGCCGTTCACAAGATGATGATCTTGGTGAACGAACTCTTGCTCCAAAGCAGGAGTGGGAATTTGAATTCCATCTGGACTTCGAGAGCTATTTCAATTGTGAGTTTTGGCACTCCAATGACCACCATCAGAAGTTCGATGTGTTTGTTCCCAGTGATAAGTTTGTTCACAGGTGTGGCGGGGCTCATTGCATTTGGCATGTAGAAGAGACCGGATTCTTCTTATATCACATCAAGACTGGATGGTGGGAAAAATCTTATGACTGGCAAATAGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

147

Amino Acids

17.4

Weight (kDa)

6.02

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08560 AT5G43090 AT5G43110
fragaria_vesca	FvH4_1g17330 FvH4_4g05642 FvH4_6g00810
prunus_persica	Prupe.1G043900_v2.0.a1 Prupe.1G059500_v2.0.a1 Prupe.1G059700_v2.0.a1 Prupe.1G060000_v2.0.a1 Prupe.1G060100_v2.0.a1 Prupe.4G236000_v2.0.a1
pyrus_communis	pycom05g24890
rosa_chinensis	RchiOBHm_Chr3g0448291 RchiOBHm_Chr3g0448331
rosa_laevigata	RLG00000017575 RLG00000017576 RLG00000025927
rosa_multiflora	Rmu_sc0007168.1_g000011 Rmu_sc0010952.1_g000002
rosa_roxburghii	Rroxscaffold_4G00301640 Rroxscaffold_5G00341650
rosa_rugosa	Rorug02G0610600 Rorug03G0347600
rosa_samantha	Rh1CG232900 Rh2AG193400 Rh3AG010100 Rh3BG009700 Rh3CG009600 Rh3DG010200
rosa_wichuraiana	Rw3G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	221, 227
AfeI	AGCGCT	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	227, 256
AleI	CACNNNNGTG	1 cut(s)	333
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	1 cut(s)	249
AluI	AGCT	1 cut(s)	249
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	221, 227
AspLEI	GCGC	2 cut(s)	114, 123
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	4 cut(s)	107, 240, 294, 396
BceAI	ACGGC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse1I	ACTGG	3 cut(s)	312, 403, 428
Bse3DI	GCAATG	3 cut(s)	30, 160, 346
Bse8I	GATNNNNATC	1 cut(s)	180
BseGI	GGATG	1 cut(s)	407
BseJI	GATNNNNATC	1 cut(s)	180
BseMI	GCAATG	3 cut(s)	30, 160, 346
BseNI	ACTGG	3 cut(s)	312, 403, 428
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	51, 346
Bsp143I	GATC	2 cut(s)	81, 181
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	3 cut(s)	30, 160, 346
BsrI	ACTGG	3 cut(s)	312, 403, 428
BssMI	GATC	2 cut(s)	81, 181
Bst6I	CTCTTC	2 cut(s)	56, 360
BstF5I	GGATG	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	114, 123
BstKTI	GATC	2 cut(s)	84, 184
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	81, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 120
BstNSI	RCATGY	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	319
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	2 cut(s)	114, 123
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	2 cut(s)	103, 359
CviJI	RGCY	4 cut(s)	59, 72, 249, 344
CviKI_1	RGCY	4 cut(s)	59, 72, 249, 344
DpnI	GATC	2 cut(s)	83, 183
DpnII	GATC	2 cut(s)	81, 181
Eam1104I	CTCTTC	2 cut(s)	56, 360
EarI	CTCTTC	2 cut(s)	56, 360
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	362
Eco47III	AGCGCT	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	2 cut(s)	106, 362
FaiI	YATR	5 cut(s)	80, 104, 360, 385, 420
FatI	CATG	2 cut(s)	102, 358
FauI	CCCGC	1 cut(s)	332
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	414
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	29
FspAI	RTGCGCAY	1 cut(s)	122
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	2 cut(s)	113, 122
GluI	GCNGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	2 cut(s)	114, 123
Hin1II	CATG	2 cut(s)	106, 362
Hin6I	GCGC	2 cut(s)	112, 121
HinP1I	GCGC	2 cut(s)	112, 121
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	375
HpaI	GTTAAC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	5 cut(s)	130, 157, 170, 191, 328
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	103, 236, 244, 394
Hpy8I	GTNNAC	5 cut(s)	130, 157, 170, 191, 328
HpyCH4V	TGCA	2 cut(s)	28, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 120
Hsp92II	CATG	2 cut(s)	106, 362
HspAI	GCGC	2 cut(s)	112, 121
KspAI	GTTAAC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	81, 181
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	8 cut(s)	75, 197, 221, 316, 325, 384, 385, 409
Lsp1109I	GCAGC	1 cut(s)	40
MalI	GATC	2 cut(s)	83, 183
MboI	GATC	2 cut(s)	81, 181
MboII	GAAGA	4 cut(s)	43, 86, 370, 377
MfeI	CAATTG	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	51, 346
MluCI	AATT	3 cut(s)	221, 227, 256
MnlI	CCTC	2 cut(s)	7, 428
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	2 cut(s)	276, 333
MspI	CCGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	118, 120
NdeII	GATC	2 cut(s)	81, 181
NlaIII	CATG	2 cut(s)	106, 362
NsbI	TGCGCA	1 cut(s)	122
NspI	RCATGY	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	333
PagI	TCATGA	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	276, 333
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	81, 181
Sau96I	GGNCC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	51, 346
SetI	ASST	2 cut(s)	251, 335
SmiMI	CAYNNNNRTG	2 cut(s)	276, 333
Sse9I	AATT	3 cut(s)	221, 227, 256
SsiI	CCGC	1 cut(s)	339
TaqI	TCGA	3 cut(s)	138, 243, 297
TasI	AATT	3 cut(s)	221, 227, 256
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	2 cut(s)	221, 227
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.