Rh2AG193400

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004567
Physical Location & Seq
Reverse (-)
19162968 .. 19163327
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG193400.1

Sequence Viewer

Length: 360 bp
ATGAAGGGAAGCTCAACATGGCACTTCTATTGTTTTGTGGGGCTAAGCAACAGCAAGTTTATCATTGGCCACAAATACTTTGTTCGTATGGTTAGCAATATCAATGACAAAGATGCATTCCACTTTACTTGTCAGTCAGGTGACGATACTATAAGTCCTCGTGAACTTGCTCCCAATCAAGAGTGGAAATGGGGATTCTGGGTAAGCTTCGGAACAAGGTTCGAGTGCATAAATTGGTACCAGAGTAGCAGCGGGGGTCCGAATCACACAACTGCGTCGTTGACACTCCTCAATATGGTGGTGTTCATGCGATATGGAGCGCACGGGACACCGGAATGTGGTTGTTCAAAGGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

119

Amino Acids

13.52

Weight (kDa)

8.32

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 28 - 82 2.8e-06 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 67
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 295, 338
AgsI TTSAA 1 cut(s) 348
AluBI AGCT 2 cut(s) 12, 207
AluI AGCT 2 cut(s) 12, 207
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 249
Asp718I GGTACC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BalI TGGCCA 1 cut(s) 69
BanI GGYRCC 1 cut(s) 237
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 1 cut(s) 261
BisI GCNGC 1 cut(s) 250
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 3 cut(s) 239, 258, 354
BmsI GCATC 1 cut(s) 103
Bpu1102I GCTNAGC 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 338
BseLI CCNNNNNNNGG 2 cut(s) 295, 338
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 295, 338
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 239, 258, 354
BspT107I GGYRCC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 69
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviAII CATG 2 cut(s) 18, 307
CviJI RGCY 4 cut(s) 12, 43, 69, 207
CviKI_1 RGCY 4 cut(s) 12, 43, 69, 207
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 118
FaeI CATG 2 cut(s) 21, 310
FaiI YATR 7 cut(s) 19, 89, 152, 230, 296, 308, 315
FaqI GGGAC 1 cut(s) 340
FatI CATG 2 cut(s) 17, 306
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 250
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 250
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 21, 310
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 2 cut(s) 195, 262
HpaII CCGG 1 cut(s) 332
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 164, 282
Hpy188I TCNGA 2 cut(s) 212, 261
Hpy188III TCNNGA 2 cut(s) 161, 179
Hpy8I GTNNAC 2 cut(s) 164, 282
Hpy99I CGWCG 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 116, 228
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 2 cut(s) 21, 310
HspAI GCGC 1 cut(s) 320
KpnI GGTACC 1 cut(s) 241
LmnI GCTCC 2 cut(s) 175, 317
LpnPI CCDG 4 cut(s) 123, 184, 254, 345
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 1 cut(s) 232
MluNI TGGCCA 1 cut(s) 69
MnlI CCTC 2 cut(s) 168, 299
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 118
MscI TGGCCA 1 cut(s) 69
MseI TTAA 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 21, 310
NlaIV GGNNCC 3 cut(s) 239, 258, 354
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 118
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 195, 262
PkrI GCNGC 1 cut(s) 251
PspN4I GGNNCC 3 cut(s) 239, 258, 354
PspPI GGNCC 1 cut(s) 257
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 334
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 257
SetI ASST 5 cut(s) 14, 142, 209, 221, 354
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 334
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 252
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 232
TfiI GAWTC 2 cut(s) 195, 262
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 17, 295
VpaK11BI GGWCC 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.