Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004567

Physical Location & Seq

Genomic Coordinates Reverse (-)

72713073 .. 72717992

Gene Structure 4920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0610600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGATTGGGAGTTCAAGCTTGTTATTGGCATATAGTGGCATCAACTACAGCTCACCAACACTTGCTTCAGCTATGGCAAATCTTATACCAATCTTTACATTCATACTGGCAGTCATTTTCAGGATGGAAAAGCTAGATTTGAGGAGGTCAAGCTGCCAAGCCAAAGTGTTAGGGACTATAGTATCAGTATCTGGAGCATTTGTAGTAATTCTATACAAGGGATCAGTGATCTTTTCACCATCCAACTCTCCTGACCAGAACTTCATGATGATCTCACAGCAGTCAAAGTGGGTCTTTGGAGGTCTTATGCTGGCAATGGTGTGCCTTCTGAATGCAATATGGGGTATTCTTCAGACATCATTTGTTCAGAACTGTCCATCAATGATTACCGTACTCTTCTTCTACAACTTCTTTGTCACAATCCAGTGCACAATATTCTCTCTAATTATGGAAAGGACTTGGAATGCTTGGGTAATAAGGCCTGACATTGAGATGATCTCCATTGTCTTCTCAGCTTTATTTGGGAGTGTGTTCCATGTGGGTGTTCAAACCTGGTGCTTGCACCAAAAGGGACCTATCTTTGTAGCCATGTTTAGGCCCCTGGGAGTTGCCATTGCAGCAGTCATGGTAGTGATCTTCCTCGGCGATGCACTTCATCTTGGAAGTGTCATTGGATCCATTATTATTGCAGTTGGCTTTTATGCTATGATGTGGGCACAAATCAAAGAAAAGAGCACTACTCTTATGGAGAATGAAGTCCAAAGCTTGGCACCATCATCCACCCAAAAGACCCCTCTTTTGCAATGCAGAACCTCAGGAGAAGATGATGGAAAAGCTGGATTTGAGGAGGTCAAGCTGTCAAGCCAAAGTGCTAGGGACTATTGTATCAGTATCCGGAGCATTTGTAGTAATTCTATACAAGGGATCAGTAATCTTTTCACCACCAACTCTCCTGACCAGAACTTCGTTATGATCTCGCAGCAGTCAAAGTGGGTCTTTGGAGGTCTCATGCTTGCAATGGCGAGCGTTTTGGCCTCATCATGGTGCATTCTTCAGACATCAATTGTTAAGAATTGTCCATCAATGATTACCGTAGTCTTCTTCTACACCTTCTTTGTGACAATTCAATCCACTGTGTTCTCTCTATTTTTGGAAAGCAATCCAAGTGCTTGGGTACTAAGGCCTGACATTGAGATAATCTCCATTGTCTTCTCAGCTGTATTTGGGAGTGTGTTCCATATTGGTGTTGAAACCTGGTCCTTGCACCAAAAGGGACCTATCTTTGTAGCCATGTTTAGGCCCTTGGGAGTTGCCATTGCTTCAGTCATGGTAGTCATCTTCCTTGGCGACGCACTTCACCTTGGCAGTGCGATTGGATCTATCATTATTGCAATTGGGTTTTATGCTATGATGTGGGCACAAATCAAAGAAAAGAGCACCAATGGTACAGAGAATGAAGTCCAAAGCTTGGCATCATCCACTCAAAAGACCCCTCTTTTACAATGCAGAACCTCTGGAGAAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

509

Amino Acids

55.78

Weight (kDa)

7.51

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08560 AT5G43090 AT5G43110
fragaria_vesca	FvH4_1g17330 FvH4_4g05642 FvH4_6g00810
prunus_persica	Prupe.1G043900_v2.0.a1 Prupe.1G059500_v2.0.a1 Prupe.1G059700_v2.0.a1 Prupe.1G060000_v2.0.a1 Prupe.1G060100_v2.0.a1 Prupe.4G236000_v2.0.a1
pyrus_communis	pycom05g24890
rosa_chinensis	RchiOBHm_Chr3g0448291 RchiOBHm_Chr3g0448331
rosa_laevigata	RLG00000017575 RLG00000017576 RLG00000025927
rosa_multiflora	Rmu_sc0007168.1_g000011 Rmu_sc0010952.1_g000002
rosa_roxburghii	Rroxscaffold_4G00301640 Rroxscaffold_5G00341650
rosa_rugosa	Rorug02G0610600 Rorug03G0347600
rosa_samantha	Rh1CG232900 Rh2AG193400 Rh3AG010100 Rh3BG009700 Rh3CG009600 Rh3DG010200
rosa_wichuraiana	Rw3G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	769
AccB7I	CCANNNNNTGG	2 cut(s)	766, 1468
AccIII	TCCGGA	1 cut(s)	894
AclWI	GGATC	5 cut(s)	229, 669, 682, 932, 1384
AcuI	CTGAAG	4 cut(s)	51, 335, 1037, 1305
AfaI	GTAC	3 cut(s)	393, 1176, 1447
AfiI	CCNNNNNNNGG	5 cut(s)	594, 766, 1041, 1296, 1468
AgsI	TTSAA	4 cut(s)	15, 548, 1127, 1250
AjnI	CCWGG	3 cut(s)	551, 600, 1253
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
Alw21I	GWGCWC	3 cut(s)	431, 737, 1439
Alw26I	GTCTC	1 cut(s)	1010
Alw44I	GTGCAC	1 cut(s)	427
AlwI	GGATC	5 cut(s)	229, 669, 682, 932, 1384
AlwNI	CAGNNNCTG	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	894
AoxI	GGCC	5 cut(s)	479, 596, 1032, 1181, 1298
ApaLI	GTGCAC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	153, 617, 979
ArsI	GACNNNNNNTTYG	4 cut(s)	781, 813, 947, 979
AspS9I	GGNCC	5 cut(s)	572, 597, 1257, 1274, 1299
AsuHPI	GGTGA	4 cut(s)	45, 228, 931, 1349
AvaII	GGWCC	3 cut(s)	572, 1257, 1274
AxyI	CCTNAGG	1 cut(s)	814
BaeGI	GKGCMC	3 cut(s)	431, 718, 1420
BaeI	ACNNNNGTAYC	4 cut(s)	165, 198, 868, 901
BamHI	GGATCC	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	769
BbsI	GAAGAC	3 cut(s)	499, 1090, 1201
Bbv12I	GWGCWC	3 cut(s)	431, 737, 1439
BbvI	GCAGC	3 cut(s)	140, 629, 991
BccI	CCATC	6 cut(s)	118, 247, 385, 781, 821, 1087
BciT130I	CCWGG	3 cut(s)	553, 602, 1255
BciVI	GTATCC	1 cut(s)	902
BcoDI	GTCTC	1 cut(s)	1010
BfaI	CTAG	2 cut(s)	134, 873
BfmI	CTRYAG	2 cut(s)	46, 177
BfuI	GTATCC	1 cut(s)	902
BisI	GCNGC	3 cut(s)	154, 618, 980
BlsI	GCNGC	3 cut(s)	155, 619, 981
Bme1390I	CCNGG	3 cut(s)	553, 602, 1255
Bme18I	GGWCC	3 cut(s)	572, 1257, 1274
BmgT120I	GGNCC	5 cut(s)	572, 597, 1257, 1274, 1299
BmiI	GGNNCC	5 cut(s)	573, 599, 676, 771, 1275
BmrFI	CCNGG	3 cut(s)	553, 602, 1255
BmsI	GCATC	3 cut(s)	48, 637, 1481
BpiI	GAAGAC	3 cut(s)	499, 1090, 1201
BplI	GAGNNNNNCTC	6 cut(s)	482, 514, 724, 756, 1184, 1216
BpmI	CTGGAG	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	6 cut(s)	600, 601, 640, 1302, 1342, 1360
BsaWI	WCCGGW	1 cut(s)	894
BsaXI	ACNNNNNCTCC	7 cut(s)	186, 216, 889, 919, 934, 964, 1509
Bsc4I	CCNNNNNNNGG	5 cut(s)	594, 766, 1041, 1296, 1468
Bse1I	ACTGG	2 cut(s)	111, 424
Bse21I	CCTNAGG	1 cut(s)	814
Bse3DI	GCAATG	5 cut(s)	321, 612, 809, 1023, 1314
BseAI	TCCGGA	1 cut(s)	894
BseBI	CCWGG	3 cut(s)	553, 602, 1255
BseDI	CCNNGG	6 cut(s)	600, 601, 640, 1302, 1342, 1360
BseGI	GGATG	4 cut(s)	129, 239, 776, 1475
BseLI	CCNNNNNNNGG	5 cut(s)	594, 766, 1041, 1296, 1468
BseMI	GCAATG	5 cut(s)	321, 612, 809, 1023, 1314
BseMII	CTCAG	3 cut(s)	525, 828, 1227
BseNI	ACTGG	2 cut(s)	111, 424
BseRI	GAGGAG	2 cut(s)	157, 860
BseSI	GKGCMC	3 cut(s)	431, 718, 1420
BseXI	GCAGC	3 cut(s)	140, 629, 991
BshFI	GGCC	5 cut(s)	481, 598, 1034, 1183, 1300
BshNI	GGYRCC	1 cut(s)	769
BsiHKAI	GWGCWC	3 cut(s)	431, 737, 1439
BsiSI	CCGG	1 cut(s)	895
BslFI	GGGAC	4 cut(s)	187, 585, 890, 1287
BslI	CCNNNNNNNGG	5 cut(s)	594, 766, 1041, 1296, 1468
BsmAI	GTCTC	1 cut(s)	1010
BsmFI	GGGAC	4 cut(s)	187, 585, 890, 1287
BsmI	GAATGC	3 cut(s)	337, 469, 1047
BsnI	GGCC	5 cut(s)	481, 598, 1034, 1183, 1300
Bso31I	GGTCTC	1 cut(s)	1010
Bsp1286I	GDGCHC	5 cut(s)	431, 718, 737, 1420, 1439
Bsp13I	TCCGGA	1 cut(s)	894
Bsp143I	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
BspANI	GGCC	5 cut(s)	481, 598, 1034, 1183, 1300
BspCNI	CTCAG	3 cut(s)	524, 827, 1226
BspEI	TCCGGA	1 cut(s)	894
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	5 cut(s)	573, 599, 676, 771, 1275
BspPI	GGATC	5 cut(s)	229, 669, 682, 932, 1384
BspT107I	GGYRCC	1 cut(s)	769
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	5 cut(s)	321, 612, 809, 1023, 1314
BsrI	ACTGG	2 cut(s)	111, 424
BssECI	CCNNGG	6 cut(s)	600, 601, 640, 1302, 1342, 1360
BssMI	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
BssT1I	CCWWGG	3 cut(s)	1302, 1342, 1360
Bst2UI	CCWGG	3 cut(s)	553, 602, 1255
Bst4CI	ACNGT	4 cut(s)	374, 391, 1093, 1135
Bst6I	CTCTTC	1 cut(s)	401
BstC8I	GCNNGC	4 cut(s)	312, 560, 1014, 1024
BstDEI	CTNAG	4 cut(s)	511, 814, 1178, 1213
BstF5I	GGATG	4 cut(s)	129, 239, 776, 1475
BstKTI	GATC	9 cut(s)	224, 231, 273, 498, 636, 677, 927, 975, 1379
BstMAI	GTCTC	1 cut(s)	1010
BstMBI	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	3 cut(s)	553, 602, 1255
BstSCI	CCNGG	3 cut(s)	551, 600, 1253
BstSFI	CTRYAG	2 cut(s)	46, 177
BstSLI	GKGCMC	3 cut(s)	431, 718, 1420
BstV1I	GCAGC	3 cut(s)	140, 629, 991
BstV2I	GAAGAC	3 cut(s)	499, 1090, 1201
BstX2I	RGATCY	2 cut(s)	674, 1376
BstXI	CCANNNNNNTGG	1 cut(s)	1170
BstYI	RGATCY	2 cut(s)	674, 1376
Bsu36I	CCTNAGG	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	902
BsuRI	GGCC	5 cut(s)	481, 598, 1034, 1183, 1300
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	4 cut(s)	129, 239, 776, 1475
BtsI	GCAGTG	1 cut(s)	1372
BtsIMutI	CAGTG	4 cut(s)	231, 431, 1131, 1372
Cac8I	GCNNGC	4 cut(s)	312, 560, 1014, 1024
CaiI	CAGNNNCTG	1 cut(s)	191
CciI	TCATGA	1 cut(s)	264
Cfr13I	GGNCC	5 cut(s)	572, 597, 1257, 1274, 1299
CseI	GACGC	1 cut(s)	1358
CsiI	ACCWGGT	2 cut(s)	551, 1253
Csp6I	GTAC	3 cut(s)	392, 1175, 1446
CviAII	CATG	8 cut(s)	265, 536, 589, 625, 1009, 1041, 1291, 1327
CviQI	GTAC	3 cut(s)	392, 1175, 1446
DdeI	CTNAG	4 cut(s)	511, 814, 1178, 1213
DpnI	GATC	9 cut(s)	223, 230, 272, 497, 635, 676, 926, 974, 1378
DpnII	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco130I	CCWWGG	3 cut(s)	1302, 1342, 1360
Eco147I	AGGCCT	2 cut(s)	481, 1183
Eco31I	GGTCTC	1 cut(s)	1010
Eco47I	GGWCC	3 cut(s)	572, 1257, 1274
Eco57I	CTGAAG	4 cut(s)	51, 335, 1037, 1305
Eco81I	CCTNAGG	1 cut(s)	814
EcoO109I	RGGNCCY	4 cut(s)	572, 597, 1274, 1299
EcoRII	CCWGG	3 cut(s)	551, 600, 1253
EcoT14I	CCWWGG	3 cut(s)	1302, 1342, 1360
ErhI	CCWWGG	3 cut(s)	1302, 1342, 1360
FaeI	CATG	8 cut(s)	268, 539, 592, 628, 1012, 1044, 1294, 1330
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 980, 1012
FaqI	GGGAC	4 cut(s)	187, 585, 890, 1287
FatI	CATG	8 cut(s)	264, 535, 588, 624, 1008, 1040, 1290, 1326
Fnu4HI	GCNGC	3 cut(s)	154, 618, 980
FokI	GGATG	4 cut(s)	136, 226, 763, 1462
Fsp4HI	GCNGC	3 cut(s)	154, 618, 980
FspBI	CTAG	2 cut(s)	134, 873
GluI	GCNGC	3 cut(s)	154, 618, 980
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	5 cut(s)	481, 598, 1034, 1183, 1300
HapII	CCGG	1 cut(s)	895
HgaI	GACGC	1 cut(s)	1358
Hin1II	CATG	8 cut(s)	268, 539, 592, 628, 1012, 1044, 1294, 1330
HindIII	AAGCTT	3 cut(s)	16, 763, 1465
HpaII	CCGG	1 cut(s)	895
HphI	GGTGA	4 cut(s)	45, 228, 931, 1349
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	4 cut(s)	330, 354, 369, 1056
Hpy188III	TCNNGA	8 cut(s)	121, 192, 251, 265, 816, 895, 953, 1515
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	1 cut(s)	1352
HpyAV	CCTTC	2 cut(s)	335, 1120
HpyCH4III	ACNGT	4 cut(s)	374, 391, 1093, 1135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	4 cut(s)	511, 814, 1178, 1213
Hsp92II	CATG	8 cut(s)	268, 539, 592, 628, 1012, 1044, 1294, 1330
Kpn2I	TCCGGA	1 cut(s)	894
Kzo9I	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
LmnI	GCTCC	2 cut(s)	194, 897
Lsp1109I	GCAGC	3 cut(s)	140, 629, 991
LweI	GCATC	3 cut(s)	48, 637, 1481
MabI	ACCWGGT	2 cut(s)	551, 1253
MaeI	CTAG	2 cut(s)	134, 873
MaeIII	GTNAC	2 cut(s)	415, 1117
MalI	GATC	9 cut(s)	223, 230, 272, 497, 635, 676, 926, 974, 1378
MboI	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
MfeI	CAATTG	2 cut(s)	1062, 1392
MflI	RGATCY	2 cut(s)	674, 1376
MhlI	GDGCHC	5 cut(s)	431, 718, 737, 1420, 1439
MluCI	AATT	7 cut(s)	207, 444, 910, 1062, 1072, 1122, 1392
MmeI	TCCRAC	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	894
MseI	TTAA	1 cut(s)	1068
MslI	CAYNNNNRTG	5 cut(s)	491, 540, 629, 1042, 1242
MspA1I	CMGCKG	1 cut(s)	1217
MspI	CCGG	1 cut(s)	895
MspR9I	CCNGG	3 cut(s)	553, 602, 1255
MunI	CAATTG	2 cut(s)	1062, 1392
Mva1269I	GAATGC	3 cut(s)	337, 469, 1047
MvaI	CCWGG	3 cut(s)	553, 602, 1255
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeII	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
NlaIII	CATG	8 cut(s)	268, 539, 592, 628, 1012, 1044, 1294, 1330
NlaIV	GGNNCC	5 cut(s)	573, 599, 676, 771, 1275
NmeAIII	GCCGAG	1 cut(s)	621
NmuCI	GTSAC	2 cut(s)	415, 1117
PagI	TCATGA	1 cut(s)	264
PasI	CCCWGGG	1 cut(s)	601
PceI	AGGCCT	2 cut(s)	481, 1183
PctI	GAATGC	3 cut(s)	337, 469, 1047
PflMI	CCANNNNNTGG	2 cut(s)	766, 1468
PkrI	GCNGC	3 cut(s)	155, 619, 981
PpuMI	RGGWCCY	2 cut(s)	572, 1274
Psp5II	RGGWCCY	2 cut(s)	572, 1274
Psp6I	CCWGG	3 cut(s)	551, 600, 1253
PspGI	CCWGG	3 cut(s)	551, 600, 1253
PspN4I	GGNNCC	5 cut(s)	573, 599, 676, 771, 1275
PspPI	GGNCC	5 cut(s)	572, 597, 1257, 1274, 1299
PspPPI	RGGWCCY	2 cut(s)	572, 1274
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	674, 1376
PvuII	CAGCTG	1 cut(s)	1217
RsaI	GTAC	3 cut(s)	393, 1176, 1447
RsaNI	GTAC	3 cut(s)	392, 1175, 1446
RseI	CAYNNNNRTG	5 cut(s)	491, 540, 629, 1042, 1242
SaqAI	TTAA	1 cut(s)	1068
SatI	GCNGC	3 cut(s)	154, 618, 980
Sau3AI	GATC	9 cut(s)	221, 228, 270, 495, 633, 674, 924, 972, 1376
Sau96I	GGNCC	5 cut(s)	572, 597, 1257, 1274, 1299
ScrFI	CCNGG	3 cut(s)	553, 602, 1255
SduI	GDGCHC	5 cut(s)	431, 718, 737, 1420, 1439
SexAI	ACCWGGT	2 cut(s)	551, 1253
SfaNI	GCATC	3 cut(s)	48, 637, 1481
SfcI	CTRYAG	2 cut(s)	46, 177
SinI	GGWCC	3 cut(s)	572, 1257, 1274
SmiMI	CAYNNNNRTG	5 cut(s)	491, 540, 629, 1042, 1242
Sse9I	AATT	7 cut(s)	207, 444, 910, 1062, 1072, 1122, 1392
SseBI	AGGCCT	2 cut(s)	481, 1183
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	2 cut(s)	134, 873
StuI	AGGCCT	2 cut(s)	481, 1183
StyD4I	CCNGG	3 cut(s)	551, 600, 1253
StyI	CCWWGG	3 cut(s)	1302, 1342, 1360
TaaI	ACNGT	4 cut(s)	374, 391, 1093, 1135
TasI	AATT	7 cut(s)	207, 444, 910, 1062, 1072, 1122, 1392
Tru1I	TTAA	1 cut(s)	1068
Tru9I	TTAA	1 cut(s)	1068
TscAI	CASTG	4 cut(s)	231, 431, 1138, 1372
TseFI	GTSAC	2 cut(s)	415, 1117
TseI	GCWGC	3 cut(s)	153, 617, 979
Tsp45I	GTSAC	2 cut(s)	415, 1117
TspDTI	ATGAA	5 cut(s)	91, 253, 644, 768, 1470
TspRI	CASTG	4 cut(s)	231, 431, 1138, 1372
Van91I	CCANNNNNTGG	2 cut(s)	766, 1468
VneI	GTGCAC	1 cut(s)	427
VpaK11BI	GGWCC	3 cut(s)	572, 1257, 1274
XspI	CTAG	2 cut(s)	134, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.