Rroxscaffold_4G00301640

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004567
Physical Location & Seq
Forward (+)
21998966 .. 22002662
3697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301640.1

Sequence Viewer

Length: 366 bp
ATGAAGGGAAAGAAAACAGCATGGAAGTTTTATTGTTTTGTGCTCTTTCTTGCATTGGCCTTCAGGCCAAGTAGCAGCAAGGAGGCATTACTTGGGAGAAAGTATTTCGTGCGTGTCATTAACAATCTCGGCGCCGGCGAACAACTCGTGTTCAAGTGTCTATCTGATGTTGACACTATTGGTCCTCGTCCTCTCCCTCCAAACGAAGAGATTGGTCCTTTTGGTGGAGTTCATTGCATATGGAGTGCTCGAACTACTGGAATGTCTTTGTACAACATCAAGACCCAAGAATATGCAAAACGATATGATTGGTTGTCCCTGTTTTTTAAAAGTGCAACACCCAAAATACCCCCTGCTGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

121

Amino Acids

13.64

Weight (kDa)

9.6

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 154
Alw21I GWGCWC 2 cut(s) 45, 250
AoxI GGCC 2 cut(s) 57, 65
ApeKI GCWGC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 182, 215
AvaII GGWCC 2 cut(s) 182, 215
BanI GGYRCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 45, 250
BbvI GCAGC 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme18I GGWCC 2 cut(s) 182, 215
BmgT120I GGNCC 2 cut(s) 182, 215
BmiI GGNNCC 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 87
BshFI GGCC 2 cut(s) 59, 67
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 45, 250
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 2 cut(s) 59, 67
Bsp1286I GDGCHC 2 cut(s) 45, 250
Bsp1407I TGTACA 1 cut(s) 270
BspANI GGCC 2 cut(s) 59, 67
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 59, 67
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 182, 215
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 21
CviJI RGCY 2 cut(s) 59, 67
CviKI_1 RGCY 2 cut(s) 59, 67
CviQI GTAC 1 cut(s) 271
DinI GGCGCC 1 cut(s) 133
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 182, 215
Eco57I CTGAAG 1 cut(s) 46
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
FaeI CATG 1 cut(s) 24
FaiI YATR 5 cut(s) 22, 239, 241, 294, 306
FaqI GGGAC 1 cut(s) 301
FatI CATG 1 cut(s) 20
FauNDI CATATG 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
GlaI GCGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 2 cut(s) 59, 67
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 24
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 280, 363
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 53, 237, 296, 335
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 24
HspAI GCGC 1 cut(s) 132
KasI GGCGCC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 49, 148, 243, 332
Lsp1109I GCAGC 1 cut(s) 87
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 45, 250
Mly113I GGCGCC 1 cut(s) 132
MnlI CCTC 4 cut(s) 76, 195, 201, 207
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 2 cut(s) 120, 327
MspI CCGG 1 cut(s) 135
NaeI GCCGGC 1 cut(s) 136
NarI GGCGCC 1 cut(s) 132
NdeI CATATG 1 cut(s) 239
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 77
PluTI GGCGCC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 182, 215
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 120, 327
SatI GCNGC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 182, 215
SduI GDGCHC 2 cut(s) 45, 250
SfoI GGCGCC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 182, 215
SspDI GGCGCC 1 cut(s) 131
TaqI TCGA 1 cut(s) 250
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 120, 327
Tru9I TTAA 2 cut(s) 120, 327
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 2 cut(s) 17, 221
VpaK11BI GGWCC 2 cut(s) 182, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.