RLG00000017576

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004567
Physical Location & Seq
Reverse (-)
18426630 .. 18426935
306 bp
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UTR
Exon/CDS
Intron
RLM00000017576

Sequence Viewer

Length: 306 bp
ATGAAGGGAAGCTCAACACGGCAATTGTACAGTTATTTTCTCTTCCTTCCGTTAGCCTTTGGGCAAAGCAACAACACCCAACCCATCGTTGGGCACAAGTATCTTGTTCGTTTTATTAACAATATCAACAACAAAGATGTATTCAACTTTAGGTGCTGGTCGGATCCTGATACTATTGGTCCCCGTGAGCTTGCTCCCAATCAACAATGGGAATTCGGATTCCGACTAACCTACGGAACATTGTTCCAATGCACGACGTGGTACCAGAGTAGCCGGAAACATTCAGAAACATTCAGCTTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

102

Amino Acids

11.91

Weight (kDa)

9.34

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 36 - 96 1.9e-10 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AclWI GGATC 2 cut(s) 158, 171
AcsI RAATTY 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 2 cut(s) 29, 263
AfiI CCNNNNNNNGG 2 cut(s) 89, 90
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 258
AluBI AGCT 3 cut(s) 12, 190, 297
AluI AGCT 3 cut(s) 12, 190, 297
AlwI GGATC 2 cut(s) 158, 171
ApoI RAATTY 1 cut(s) 212
Asp718I GGTACC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 179
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BamHI GGATCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 261
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 3 cut(s) 165, 181, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 90
BseLI CCNNNNNNNGG 2 cut(s) 89, 90
BseSI GKGCMC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 89, 90
BsmFI GGGAC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 165, 181, 263
BspPI GGATC 2 cut(s) 158, 171
BspT107I GGYRCC 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 27
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtrI CACGTC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 28, 262
CviJI RGCY 5 cut(s) 12, 56, 190, 273, 297
CviKI_1 RGCY 5 cut(s) 12, 56, 190, 273, 297
CviQI GTAC 2 cut(s) 28, 262
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraIII CACNNNGTG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 212
FaqI GGGAC 1 cut(s) 165
HapII CCGG 1 cut(s) 274
HinfI GANTC 1 cut(s) 219
HpaII CCGG 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 163, 218, 224, 286
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 257
KpnI GGTACC 1 cut(s) 265
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 4 cut(s) 142, 180, 278, 287
MaeII ACGT 1 cut(s) 257
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 34
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 23, 212
MmeI TCCRAC 2 cut(s) 141, 247
MseI TTAA 2 cut(s) 117, 304
MspI CCGG 1 cut(s) 274
MunI CAATTG 1 cut(s) 23
NdeII GATC 1 cut(s) 163
NlaIV GGNNCC 3 cut(s) 165, 181, 263
PfeI GAWTC 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 165, 181, 263
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 29, 263
RsaNI GTAC 2 cut(s) 28, 262
SaqAI TTAA 2 cut(s) 117, 304
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 179
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 14, 155, 192, 233, 260, 299
SinI GGWCC 1 cut(s) 179
Sse9I AATT 2 cut(s) 23, 212
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 260
TasI AATT 2 cut(s) 23, 212
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 2 cut(s) 117, 304
Tru9I TTAA 2 cut(s) 117, 304
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 39, 249
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.