Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004567

Physical Location & Seq

Genomic Coordinates Forward (+)

4202548 .. 4203000

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGGGATCAACCCCAAGATGGCAGCTGCACTTTTTTTTGGTCTTGCTTGCCCTAGCCTTTGTTGGTCAAATTAGCTGCTTTAATCCAGATCCAATCCCCGGGAGAAAGCACTTCGTCCGTCTTGTTAACAATCTCCGAAATGGGCAACTTTTGGTTAAGTGTGGATCCGAAACTCCAGATGATCTTCTTGGCGAGCATCTTCTTGGCACCAATGAGGAGTATGAATTTGGATTTCGCATGAACCTCTACCGCACTAAATTTTACCGCTGTGATATGTCCTACTCCAATTACCATAATCGTTTCGAAGCATTTACCGCCACTAAACATTTTCTGGAAAAATGTGGCGGAGTTCATTGCATATGGAGGGCGCAAGAGGATGGGATATCCTTGTACAACATCAAGCATGATCAGTGGTCTCTGATCTACCGTTGGGAAATACAGAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

151

Amino Acids

17.77

Weight (kDa)

8.62

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08560 AT5G43090 AT5G43110
fragaria_vesca	FvH4_1g17330 FvH4_4g05642 FvH4_6g00810
prunus_persica	Prupe.1G043900_v2.0.a1 Prupe.1G059500_v2.0.a1 Prupe.1G059700_v2.0.a1 Prupe.1G060000_v2.0.a1 Prupe.1G060100_v2.0.a1 Prupe.4G236000_v2.0.a1
pyrus_communis	pycom05g24890
rosa_chinensis	RchiOBHm_Chr3g0448291 RchiOBHm_Chr3g0448331
rosa_laevigata	RLG00000017575 RLG00000017576 RLG00000025927
rosa_multiflora	Rmu_sc0007168.1_g000011 Rmu_sc0010952.1_g000002
rosa_roxburghii	Rroxscaffold_4G00301640 Rroxscaffold_5G00341650
rosa_rugosa	Rorug02G0610600 Rorug03G0347600
rosa_samantha	Rh1CG232900 Rh2AG193400 Rh3AG010100 Rh3BG009700 Rh3CG009600 Rh3DG010200
rosa_wichuraiana	Rw3G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	4 cut(s)	253, 268, 318, 348
AclWI	GGATC	4 cut(s)	16, 86, 162, 175
AcsI	RAATTY	3 cut(s)	227, 260, 447
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	21, 101
AluBI	AGCT	2 cut(s)	28, 78
AluI	AGCT	2 cut(s)	28, 78
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	4 cut(s)	16, 86, 162, 175
Ama87I	CYCGRG	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	25, 28, 78
ApoI	RAATTY	3 cut(s)	227, 260, 447
AspLEI	GCGC	1 cut(s)	373
AsuC2I	CCSGG	2 cut(s)	102, 103
AsuII	TTCGAA	1 cut(s)	306
AvaI	CYCGRG	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	15, 37, 65
BccI	CCATC	2 cut(s)	15, 374
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	2 cut(s)	102, 103
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	26, 29, 79
BlsI	GCNGC	3 cut(s)	27, 30, 80
Bme1390I	CCNGG	2 cut(s)	102, 103
BmeT110I	CYCGRG	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	169, 211
BmrFI	CCNGG	2 cut(s)	102, 103
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	102, 103
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	100, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 101
Bse3DI	GCAATG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	100, 101
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	21, 101
BseMI	GCAATG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	15, 37, 65
BsgI	GTGCAG	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	21, 101
BsmAI	GTCTC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
BspACI	CCGC	4 cut(s)	253, 268, 318, 348
BspLI	GGNNCC	2 cut(s)	169, 211
BspPI	GGATC	4 cut(s)	16, 86, 162, 175
BspT104I	TTCGAA	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	100, 101
BssMI	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
Bst4CI	ACNGT	1 cut(s)	431
BstAUI	TGTACA	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	51, 197
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	6 cut(s)	11, 94, 170, 187, 412, 426
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	100, 101
BstV1I	GCAGC	3 cut(s)	15, 37, 65
BstX2I	RGATCY	2 cut(s)	91, 167
BstYI	RGATCY	2 cut(s)	91, 167
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	51, 197
CfoI	GCGC	1 cut(s)	373
Cfr9I	CCCGGG	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	2 cut(s)	241, 407
CviJI	RGCY	3 cut(s)	28, 59, 78
CviKI_1	RGCY	3 cut(s)	28, 59, 78
CviQI	GTAC	1 cut(s)	394
DpnI	GATC	6 cut(s)	10, 93, 169, 186, 411, 425
DpnII	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
EciI	GGCGGA	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	387
FaeI	CATG	2 cut(s)	244, 410
FaiI	YATR	7 cut(s)	225, 242, 278, 297, 362, 364, 408
FatI	CATG	2 cut(s)	240, 406
FauNDI	CATATG	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	26, 29, 79
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	26, 29, 79
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	3 cut(s)	26, 29, 79
GsuI	CTGGAG	1 cut(s)	162
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	244, 410
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HpaI	GTTAAC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	140, 172, 423
Hpy188III	TCNNGA	3 cut(s)	89, 179, 335
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	2 cut(s)	31, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	244, 410
HspAI	GCGC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	409
KspAI	GTTAAC	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
LpnPI	CCDG	4 cut(s)	102, 115, 192, 320
Lsp1109I	GCAGC	3 cut(s)	15, 37, 65
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	56
MalI	GATC	6 cut(s)	10, 93, 169, 186, 411, 425
MboI	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
MboII	GAAGA	2 cut(s)	179, 194
MflI	RGATCY	2 cut(s)	91, 167
MluCI	AATT	5 cut(s)	72, 227, 260, 289, 447
MnlI	CCTC	4 cut(s)	211, 257, 360, 370
MseI	TTAA	4 cut(s)	84, 129, 159, 451
MspA1I	CMGCKG	2 cut(s)	28, 270
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	102, 103
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	2 cut(s)	102, 103
NdeI	CATATG	1 cut(s)	362
NdeII	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
NlaIII	CATG	2 cut(s)	244, 410
NlaIV	GGNNCC	2 cut(s)	169, 211
NspV	TTCGAA	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	27, 30, 80
PspN4I	GGNNCC	2 cut(s)	169, 211
PsuI	RGATCY	2 cut(s)	91, 167
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	4 cut(s)	84, 129, 159, 451
SatI	GCNGC	3 cut(s)	26, 29, 79
Sau3AI	GATC	6 cut(s)	8, 91, 167, 184, 409, 423
ScrFI	CCNGG	2 cut(s)	102, 103
SetI	ASST	3 cut(s)	30, 80, 249
SfaNI	GCATC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	306
SmaI	CCCGGG	1 cut(s)	103
Sse9I	AATT	5 cut(s)	72, 227, 260, 289, 447
SsiI	CCGC	4 cut(s)	253, 268, 318, 348
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	100, 101
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	1 cut(s)	306
TasI	AATT	5 cut(s)	72, 227, 260, 289, 447
TatI	WGTACW	1 cut(s)	393
Tru1I	TTAA	4 cut(s)	84, 129, 159, 451
Tru9I	TTAA	4 cut(s)	84, 129, 159, 451
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	3 cut(s)	25, 28, 78
TspDTI	ATGAA	4 cut(s)	17, 240, 257, 344
TspGWI	ACGGA	1 cut(s)	110
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	1 cut(s)	419
XapI	RAATTY	3 cut(s)	227, 260, 447
XmaI	CCCGGG	1 cut(s)	101
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.