Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004567

Physical Location & Seq

Genomic Coordinates Forward (+)

4240797 .. 4241350

Gene Structure 554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAACAAATGGAGGGAAAAGCAATGCGGCAGTGGTACTATTTTCTTGTGCTCTTCTTGGCTTTGGCATTTGGCCCAAATATCTGCTCTGGTCTTCCCGTCATGACAAAGCGCTTTGTGCGCATTGTTAACTTGCTCGACAACAAGCAACTTGTCTACCATTGCCATTCAAAAGATGATGATCTTGGTCAACGTACTCTTGCTCCCCAGCAGGAGTGGGAATTTAAATTTCATCTCGACTTCGAGACCATTTTTACCTGTAATTTTTGGCACTCAAATAACCACCATGCTCATTTCGATGTGTTTCATCCCAGTAACAAGTTTGTTCACAGGTGTGGCGGGGCCCATTGCATATGGAGAGCAGAAGAGATTGGACTCTCCTTGTATCACATCAAGACTGGTCTCTGGGAAAAATCTTATGATTGGGAAATATGTGGAAAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

150

Amino Acids

17.71

Weight (kDa)

7.71

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08560 AT5G43090 AT5G43110
fragaria_vesca	FvH4_1g17330 FvH4_4g05642 FvH4_6g00810
prunus_persica	Prupe.1G043900_v2.0.a1 Prupe.1G059500_v2.0.a1 Prupe.1G059700_v2.0.a1 Prupe.1G060000_v2.0.a1 Prupe.1G060100_v2.0.a1 Prupe.4G236000_v2.0.a1
pyrus_communis	pycom05g24890
rosa_chinensis	RchiOBHm_Chr3g0448291 RchiOBHm_Chr3g0448331
rosa_laevigata	RLG00000017575 RLG00000017576 RLG00000025927
rosa_multiflora	Rmu_sc0007168.1_g000011 Rmu_sc0010952.1_g000002
rosa_roxburghii	Rroxscaffold_4G00301640 Rroxscaffold_5G00341650
rosa_rugosa	Rorug02G0610600 Rorug03G0347600
rosa_samantha	Rh1CG232900 Rh2AG193400 Rh3AG010100 Rh3BG009700 Rh3CG009600 Rh3DG010200
rosa_wichuraiana	Rw3G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	2 cut(s)	28, 339
AcsI	RAATTY	2 cut(s)	221, 227
AfaI	GTAC	2 cut(s)	38, 196
AfeI	AGCGCT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	171
AleI	CACNNNNGTG	1 cut(s)	333
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	239, 407
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	2 cut(s)	73, 342
ApaI	GGGCCC	1 cut(s)	346
ApoI	RAATTY	2 cut(s)	221, 227
AspLEI	GCGC	2 cut(s)	114, 123
AspS9I	GGNCC	3 cut(s)	74, 342, 343
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	239, 407
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmgT120I	GGNCC	3 cut(s)	74, 342, 343
BmiI	GGNNCC	2 cut(s)	343, 344
BmrI	ACTGGG	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	2 cut(s)	239, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse1I	ACTGG	2 cut(s)	312, 403
Bse3DI	GCAATG	3 cut(s)	30, 160, 346
Bse8I	GATNNNNATC	1 cut(s)	180
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	180
BseMI	GCAATG	3 cut(s)	30, 160, 346
BseNI	ACTGG	2 cut(s)	312, 403
BseSI	GKGCMC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	207
BshFI	GGCC	2 cut(s)	75, 344
BsiHKAI	GWGCWC	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	239, 407
BsnI	GGCC	2 cut(s)	75, 344
Bso31I	GGTCTC	2 cut(s)	239, 407
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	54, 346
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	28, 339
BspANI	GGCC	2 cut(s)	75, 344
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	343, 344
BspQI	GCTCTTC	1 cut(s)	59
BspTNI	GGTCTC	2 cut(s)	239, 407
BsrDI	GCAATG	3 cut(s)	30, 160, 346
BsrI	ACTGG	2 cut(s)	312, 403
BssMI	GATC	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	59, 360
BstF5I	GGATG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	114, 123
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	239, 407
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 120
BstSLI	GKGCMC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	75, 344
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	2 cut(s)	114, 123
Cfr13I	GGNCC	3 cut(s)	74, 342, 343
Csp6I	GTAC	2 cut(s)	37, 195
CviAII	CATG	2 cut(s)	103, 287
CviJI	RGCY	3 cut(s)	62, 75, 344
CviKI_1	RGCY	3 cut(s)	62, 75, 344
CviQI	GTAC	2 cut(s)	37, 195
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	59, 360
EarI	CTCTTC	2 cut(s)	59, 360
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	2 cut(s)	239, 407
Eco47III	AGCGCT	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	2 cut(s)	106, 290
FaiI	YATR	7 cut(s)	104, 288, 353, 355, 420, 433, 448
FatI	CATG	2 cut(s)	102, 286
FauI	CCCGC	1 cut(s)	332
FauNDI	CATATG	1 cut(s)	353
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	29
FspAI	RTGCGCAY	1 cut(s)	122
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	2 cut(s)	113, 122
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	75, 344
HhaI	GCGC	2 cut(s)	114, 123
Hin1II	CATG	2 cut(s)	106, 290
Hin6I	GCGC	2 cut(s)	112, 121
HinP1I	GCGC	2 cut(s)	112, 121
HincII	GTYRAC	2 cut(s)	130, 191
HindII	GTYRAC	2 cut(s)	130, 191
HinfI	GANTC	1 cut(s)	375
HpaI	GTTAAC	1 cut(s)	130
Hpy166II	GTNNAC	4 cut(s)	130, 157, 191, 328
Hpy188III	TCNNGA	4 cut(s)	103, 236, 244, 394
Hpy8I	GTNNAC	4 cut(s)	130, 157, 191, 328
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 120
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	106, 290
HspAI	GCGC	2 cut(s)	112, 121
KspAI	GTTAAC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	8 cut(s)	75, 197, 221, 271, 316, 325, 384, 391
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	46, 86, 377
MhlI	GDGCHC	2 cut(s)	54, 346
MluCI	AATT	3 cut(s)	221, 227, 262
MlyI	GAGTC	1 cut(s)	369
MnlI	CCTC	1 cut(s)	7
MseI	TTAA	2 cut(s)	129, 225
MslI	CAYNNNNRTG	2 cut(s)	297, 333
MwoI	GCNNNNNNNGC	2 cut(s)	118, 120
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	106, 290
NlaIV	GGNNCC	2 cut(s)	343, 344
NsbI	TGCGCA	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	333
PagI	TCATGA	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	343, 344
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	3 cut(s)	74, 342, 343
RsaI	GTAC	2 cut(s)	38, 196
RsaNI	GTAC	2 cut(s)	37, 195
RseI	CAYNNNNRTG	2 cut(s)	297, 333
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	129, 225
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	3 cut(s)	74, 342, 343
SchI	GAGTC	1 cut(s)	369
SduI	GDGCHC	2 cut(s)	54, 346
SetI	ASST	3 cut(s)	196, 260, 335
SmiI	ATTTAAAT	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	297, 333
Sse9I	AATT	3 cut(s)	221, 227, 262
SsiI	CCGC	2 cut(s)	28, 339
SwaI	ATTTAAAT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	4 cut(s)	138, 237, 243, 297
TasI	AATT	3 cut(s)	221, 227, 262
TauI	GCSGC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	129, 225
Tru9I	TTAA	2 cut(s)	129, 225
TscAI	CASTG	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	17, 221, 296
TspRI	CASTG	1 cut(s)	38
XapI	RAATTY	2 cut(s)	221, 227
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.