Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004567

Physical Location & Seq

Genomic Coordinates Forward (+)

4244742 .. 4245269

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G060100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGGCAGTTGTTCTATTTTGTGCTCTTCCTTTCTTTGGCATTTGGCCCAAGAAGCTGCTTTGGCTTCTGGCCTGGGAAAAAGCACTTTGTGAGAATTAAGAACGAGCTGAGCACCCAACAACTAAACTACCATTGTGAATCCGATATGGACGATCTTGGCGATCGCATTCTTGCTCCCCATCAGGAGTGGGAATTTAAATTTCGAGCTAGCTTTGACACATATTTTCAATGCTCAATGTGGTACGCGAATTTCATCGTTACGTTTGATGTATTTTATCCAAGTGATGCGTTTATGGACAGGTGTGGGGGAGTTCATTGCATATGGAGAACGCAAGAGAGTGGAATCTACTTATTTCACATCAAGACTGGAGAGTGGGAGAAAATGTATGACTGGGGAACAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

137

Amino Acids

16.41

Weight (kDa)

6.18

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08560 AT5G43090 AT5G43110
fragaria_vesca	FvH4_1g17330 FvH4_4g05642 FvH4_6g00810
prunus_persica	Prupe.1G043900_v2.0.a1 Prupe.1G059500_v2.0.a1 Prupe.1G059700_v2.0.a1 Prupe.1G060000_v2.0.a1 Prupe.1G060100_v2.0.a1 Prupe.4G236000_v2.0.a1
pyrus_communis	pycom05g24890
rosa_chinensis	RchiOBHm_Chr3g0448291 RchiOBHm_Chr3g0448331
rosa_laevigata	RLG00000017575 RLG00000017576 RLG00000025927
rosa_multiflora	Rmu_sc0007168.1_g000011 Rmu_sc0010952.1_g000002
rosa_roxburghii	Rroxscaffold_4G00301640 Rroxscaffold_5G00341650
rosa_rugosa	Rorug02G0610600 Rorug03G0347600
rosa_samantha	Rh1CG232900 Rh2AG193400 Rh3AG010100 Rh3BG009700 Rh3CG009600 Rh3DG010200
rosa_wichuraiana	Rw3G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AcsI	RAATTY	3 cut(s)	194, 200, 250
AdeI	CACNNNGTG	1 cut(s)	91
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	4 cut(s)	57, 109, 209, 213
AluI	AGCT	4 cut(s)	57, 109, 209, 213
Alw21I	GWGCWC	2 cut(s)	27, 116
AoxI	GGCC	2 cut(s)	46, 71
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	3 cut(s)	194, 200, 250
AsiSI	GCGATCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	27, 116
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	75
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	373, 398
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	373, 398
BseXI	GCAGC	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	48, 73
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	27, 116
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	48, 73
Bsp1286I	GDGCHC	2 cut(s)	27, 116
Bsp143I	GATC	2 cut(s)	154, 163
Bsp1720I	GCTNAGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	48, 73
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	248
BspOI	GCTAGC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	373, 398
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	154, 163
Bst2UI	CCWGG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	2 cut(s)	157, 166
BstMBI	GATC	2 cut(s)	154, 163
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 63
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	48, 73
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	7 cut(s)	48, 57, 66, 73, 109, 209, 213
CviKI_1	RGCY	7 cut(s)	48, 57, 66, 73, 109, 209, 213
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	156, 165
DpnII	GATC	2 cut(s)	154, 163
DraI	TTTAAA	1 cut(s)	199
DraIII	CACNNNGTG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	411
FaiI	YATR	7 cut(s)	149, 223, 296, 323, 325, 390, 409
FatI	CATG	1 cut(s)	407
FauNDI	CATATG	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	48, 73
Hin1II	CATG	1 cut(s)	411
HinfI	GANTC	2 cut(s)	140, 345
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	185, 364
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 63
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	154, 163
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	7 cut(s)	55, 60, 87, 170, 286, 354, 379
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	156, 165
MboI	GATC	2 cut(s)	154, 163
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	27, 116
MluCI	AATT	4 cut(s)	96, 194, 200, 250
MseI	TTAA	2 cut(s)	99, 198
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	54, 63
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	2 cut(s)	154, 163
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	140, 345
PkrI	GCNGC	1 cut(s)	59
Ple19I	CGATCG	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	166
RgaI	GCGATCGC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	99, 198
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	2 cut(s)	154, 163
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	27, 116
SetI	ASST	6 cut(s)	59, 111, 211, 215, 266, 305
SfaAI	GCGATCGC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	277
SgfI	GCGATCGC	1 cut(s)	166
SmiI	ATTTAAAT	1 cut(s)	199
Sse9I	AATT	4 cut(s)	96, 194, 200, 250
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	73
SwaI	ATTTAAAT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	205
TasI	AATT	4 cut(s)	96, 194, 200, 250
TfiI	GAWTC	2 cut(s)	140, 345
Tru1I	TTAA	2 cut(s)	99, 198
Tru9I	TTAA	2 cut(s)	99, 198
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	244, 305
XapI	RAATTY	3 cut(s)	194, 200, 250
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.