FvH4_1g19390

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000339
Physical Location & Seq
Forward (+)
11623795 .. 11625645
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19390.t1

Sequence Viewer

Length: 1173 bp
ATGGACGTCCATCACGACGTTATCCCATACCTCAAAATCGCTCATGAAGGACTCGAACAAGGTATTTCTGAATTCCTTCAAGCTCAATCTCCTGATTGGATCATTCACGACTTTGCCCCTCACTGGTTGCCTCCGATAGCAACTAAGCTCGGCATCTCAAATGCTCATTTCAGTATTTTCAACGCTTCCTCTATATGTTTCTTTGGATCAACATCACCAAATCGAATATCTAGATATGCTCCTAGAAAGAAGCTAGAACAATACACTTCCCCTCCCGAATGGATTCCCTTTCCGTCCAAAATATACCATAGGCCTTTCGAGGCCAAGAGACTGATGGACGGTACTTTGACACCAAATGCTTCTGGGGTGACTGATCGTTTTCGTCTGCAATCAACTATCCAAGGTTGTCAAGTCTACTTCATTCGAAGTTGTAGAGAGATCGAGGGTGAGTGGCTCGATTTGGTTGAAGACCTCCACGAAAAACCTGTAGTGCTTCCGACTGGCTTATTGCCATCATCTCTACCAAGAAGTAATGAAGACGGCAGAAAGGATAGTAATTGGTCCAAAATTGCAGTGTGGTTAGACAAACAAGAGAAAGGGAAAGTAGTTTATGTTGCATTTGGGAGTGAGCTTAATTTAAGCCAAGATGAGTTGGCTCTTGGACTGGAGCTATCCGGATTGCCTTTCTTTTGGGTGTTAAGGAAACCGAGTCATGGGTCTGGCGATGGTGACTCGGTTAAGCTACCAGATGGGTTTCAGGACCGAACCAAAGGTCGTGGACTTGTTTGGACTACGTGGGTTCCCCAGCTCAAAATTTTGTCCCACGAGTCGGTCGGGGGTTTCTTGACTCATTGCGGTTGGAGTTCCATCATTGAGTCACTCCAGTACGGGCGTCCTCTAATCATGCTGCCATTTATGTACGATCAAGGGCTGATTGCTAGGTTTTGGGACAACAAGATCGGAGCTGAGGTACCGAGAGACGAAGAGACTGGATGGTTTACAAGGAACGAGTTGGCGAATTCATTGAAGTTGATTGTGGTAGATGAGGAGGGGAAGCAGTACACAGATGGAGCTAATGAGTATAGTAAGTTGTTTAGGGACAAGGAACTCCATGATAGGTACATGGACGAATGCGTGGCGTATTTGGAAACGCATGCGCATCATGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

391

Amino Acids

44.49

Weight (kDa)

5.69

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 199 - 383 1.4e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
Acc16I TGCGCA 1 cut(s) 1158
Acc65I GGTACC 1 cut(s) 970
AccB1I GGYRCC 1 cut(s) 970
AccI GTMKAC 1 cut(s) 414
AccIII TCCGGA 1 cut(s) 674
AciI CCGC 1 cut(s) 855
AclWI GGATC 2 cut(s) 107, 214
AcsI RAATTY 3 cut(s) 71, 813, 1018
AcyI GRCGYC 2 cut(s) 6, 892
AfaI GTAC 6 cut(s) 343, 887, 920, 972, 1061, 1121
AfiI CCNNNNNNNGG 3 cut(s) 123, 713, 829
AgsI TTSAA 4 cut(s) 80, 181, 467, 1027
AluBI AGCT 9 cut(s) 83, 148, 253, 631, 670, 742, 808, 965, 1073
AluI AGCT 9 cut(s) 83, 148, 253, 631, 670, 742, 808, 965, 1073
Alw26I GTCTC 3 cut(s) 322, 972, 980
AlwI GGATC 2 cut(s) 107, 214
Aor13HI TCCGGA 1 cut(s) 674
AoxI GGCC 2 cut(s) 311, 321
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 3 cut(s) 71, 813, 1018
ArsI GACNNNNNNTTYG 2 cut(s) 757, 789
Asp700I GAANNNNTTC 2 cut(s) 75, 282
Asp718I GGTACC 1 cut(s) 970
AspLEI GCGC 1 cut(s) 1159
AspS9I GGNCC 2 cut(s) 561, 760
AsuHPI GGTGA 4 cut(s) 207, 379, 458, 740
AsuII TTCGAA 1 cut(s) 424
AvaII GGWCC 2 cut(s) 561, 760
BanI GGYRCC 1 cut(s) 970
BauI CACGAG 1 cut(s) 824
BbsI GAAGAC 2 cut(s) 474, 543
BbvCI CCTCAGC 1 cut(s) 966
BbvI GCAGC 1 cut(s) 894
BccI CCATC 8 cut(s) 18, 328, 520, 719, 743, 875, 987, 1061
BceAI ACGGC 1 cut(s) 556
BcoDI GTCTC 3 cut(s) 322, 972, 980
BfaI CTAG 4 cut(s) 231, 243, 254, 939
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 909
Bme18I GGWCC 2 cut(s) 561, 760
BmgT120I GGNCC 2 cut(s) 561, 760
BmiI GGNNCC 2 cut(s) 801, 972
BmsI GCATC 2 cut(s) 162, 1168
BpiI GAAGAC 2 cut(s) 474, 543
BpmI CTGGAG 2 cut(s) 686, 866
Bpu10I CCTNAGC 1 cut(s) 966
Bpu14I TTCGAA 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 211
BsaHI GRCGYC 2 cut(s) 6, 892
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 1 cut(s) 674
BsaXI ACNNNNNCTCC 4 cut(s) 256, 286, 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 713, 829
Bse1I ACTGG 5 cut(s) 128, 505, 669, 883, 994
Bse3DI GCAATG 1 cut(s) 850
Bse8I GATNNNNATC 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 674
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 1 cut(s) 998
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 123, 713, 829
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 1 cut(s) 957
BseNI ACTGG 5 cut(s) 128, 505, 669, 883, 994
BseRI GAGGAG 1 cut(s) 1061
BseXI GCAGC 1 cut(s) 894
BseYI CCCAGC 1 cut(s) 804
Bsh1285I CGRYCG 1 cut(s) 834
BshFI GGCC 2 cut(s) 313, 323
BshNI GGYRCC 1 cut(s) 970
BsiEI CGRYCG 1 cut(s) 834
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 3 cut(s) 805, 962, 1112
BslI CCNNNNNNNGG 3 cut(s) 123, 713, 829
BsmAI GTCTC 3 cut(s) 322, 972, 980
BsmBI CGTCTC 1 cut(s) 972
BsmFI GGGAC 3 cut(s) 805, 962, 1112
BsmI GAATGC 1 cut(s) 1136
BsnI GGCC 2 cut(s) 313, 323
Bsp119I TTCGAA 1 cut(s) 424
Bsp13I TCCGGA 1 cut(s) 674
Bsp143I GATC 6 cut(s) 99, 206, 373, 438, 922, 957
BspACI CCGC 1 cut(s) 855
BspANI GGCC 2 cut(s) 313, 323
BspCNI CTCAG 1 cut(s) 958
BspEI TCCGGA 1 cut(s) 674
BspHI TCATGA 2 cut(s) 43, 1162
BspLI GGNNCC 2 cut(s) 801, 972
BspPI GGATC 2 cut(s) 107, 214
BspT104I TTCGAA 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 970
BsrDI GCAATG 1 cut(s) 850
BsrI ACTGG 5 cut(s) 128, 505, 669, 883, 994
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 6 cut(s) 99, 206, 373, 438, 922, 957
BssNI GRCGYC 2 cut(s) 6, 892
BssSI CACGAG 1 cut(s) 824
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 824
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 978
BstACI GRCGYC 2 cut(s) 6, 892
BstBAI YACGTR 1 cut(s) 795
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 1155
BstDEI CTNAG 2 cut(s) 144, 966
BstF5I GGATG 1 cut(s) 998
BstHHI GCGC 1 cut(s) 1159
BstKTI GATC 6 cut(s) 102, 209, 376, 441, 925, 960
BstMAI GTCTC 3 cut(s) 322, 972, 980
BstMBI GATC 6 cut(s) 99, 206, 373, 438, 922, 957
BstMCI CGRYCG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 1157
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 894
BstV2I GAAGAC 2 cut(s) 474, 543
BsuRI GGCC 2 cut(s) 313, 323
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 1 cut(s) 998
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 121, 579
Cac8I GCNNGC 1 cut(s) 1155
CciI TCATGA 2 cut(s) 43, 1162
CfoI GCGC 1 cut(s) 1159
Cfr13I GGNCC 2 cut(s) 561, 760
CseI GACGC 1 cut(s) 881
Csp6I GTAC 6 cut(s) 342, 886, 919, 971, 1060, 1120
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 7 cut(s) 44, 713, 904, 1112, 1123, 1154, 1163
CviQI GTAC 6 cut(s) 342, 886, 919, 971, 1060, 1120
DdeI CTNAG 2 cut(s) 144, 966
DpnI GATC 6 cut(s) 101, 208, 375, 440, 924, 959
DpnII GATC 6 cut(s) 99, 206, 373, 438, 922, 957
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Eco130I CCWWGG 1 cut(s) 400
Eco147I AGGCCT 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 561, 760
EcoRI GAATTC 2 cut(s) 71, 1018
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
Esp3I CGTCTC 1 cut(s) 972
FaeI CATG 7 cut(s) 47, 716, 907, 1115, 1126, 1157, 1166
FaqI GGGAC 3 cut(s) 805, 962, 1112
FatI CATG 7 cut(s) 43, 712, 903, 1111, 1122, 1153, 1162
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 1 cut(s) 908
FokI GGATG 1 cut(s) 1005
Fsp4HI GCNGC 1 cut(s) 908
FspAI RTGCGCAY 1 cut(s) 1158
FspBI CTAG 4 cut(s) 231, 243, 254, 939
FspI TGCGCA 1 cut(s) 1158
GlaI GCGC 1 cut(s) 1158
GluI GCNGC 1 cut(s) 908
GsaI CCCAGC 1 cut(s) 808
GsuI CTGGAG 2 cut(s) 686, 866
HaeIII GGCC 2 cut(s) 313, 323
HapII CCGG 1 cut(s) 675
HgaI GACGC 1 cut(s) 881
HhaI GCGC 1 cut(s) 1159
Hin1I GRCGYC 2 cut(s) 6, 892
Hin1II CATG 7 cut(s) 47, 716, 907, 1115, 1126, 1157, 1166
Hin6I GCGC 1 cut(s) 1157
HinP1I GCGC 1 cut(s) 1157
HinfI GANTC 7 cut(s) 51, 283, 709, 731, 827, 847, 875
HpaII CCGG 1 cut(s) 675
HphI GGTGA 4 cut(s) 207, 379, 458, 740
Hpy166II GTNNAC 4 cut(s) 415, 779, 999, 1062
Hpy188I TCNGA 4 cut(s) 70, 135, 498, 962
Hpy8I GTNNAC 4 cut(s) 415, 779, 999, 1062
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 41, 86
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 3 cut(s) 6, 18, 794
HpyCH4V TGCA 3 cut(s) 388, 572, 617
HpyF3I CTNAG 2 cut(s) 144, 966
HpySE526I ACGT 3 cut(s) 6, 18, 794
Hsp92I GRCGYC 2 cut(s) 6, 892
Hsp92II CATG 7 cut(s) 47, 716, 907, 1115, 1126, 1157, 1166
HspAI GCGC 1 cut(s) 1157
Kpn2I TCCGGA 1 cut(s) 674
KpnI GGTACC 1 cut(s) 974
Kzo9I GATC 6 cut(s) 99, 206, 373, 438, 922, 957
LmnI GCTCC 4 cut(s) 244, 667, 962, 1070
Lsp1109I GCAGC 1 cut(s) 894
LweI GCATC 2 cut(s) 162, 1168
MaeI CTAG 4 cut(s) 231, 243, 254, 939
MaeII ACGT 3 cut(s) 6, 18, 794
MaeIII GTNAC 3 cut(s) 367, 728, 876
MalI GATC 6 cut(s) 101, 208, 375, 440, 924, 959
MboI GATC 6 cut(s) 99, 206, 373, 438, 922, 957
MboII GAAGA 3 cut(s) 479, 548, 995
MluCI AATT 6 cut(s) 71, 556, 567, 634, 813, 1018
MlyI GAGTC 6 cut(s) 45, 718, 725, 836, 841, 884
MmeI TCCRAC 2 cut(s) 521, 839
MroI TCCGGA 1 cut(s) 674
MroXI GAANNNNTTC 2 cut(s) 75, 282
MseI TTAA 4 cut(s) 633, 638, 698, 738
MspI CCGG 1 cut(s) 675
Mva1269I GAATGC 1 cut(s) 1136
NdeII GATC 6 cut(s) 99, 206, 373, 438, 922, 957
NlaIII CATG 7 cut(s) 47, 716, 907, 1115, 1126, 1157, 1166
NlaIV GGNNCC 2 cut(s) 801, 972
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 3 cut(s) 367, 728, 876
NsbI TGCGCA 1 cut(s) 1158
NspI RCATGY 1 cut(s) 1157
NspV TTCGAA 1 cut(s) 424
PaeI GCATGC 1 cut(s) 1157
PagI TCATGA 2 cut(s) 43, 1162
PceI AGGCCT 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 1136
PdmI GAANNNNTTC 2 cut(s) 75, 282
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 1 cut(s) 909
PleI GAGTC 6 cut(s) 45, 717, 725, 835, 841, 883
PpsI GAGTC 6 cut(s) 45, 717, 725, 835, 841, 883
Ppu21I YACGTR 1 cut(s) 795
PspFI CCCAGC 1 cut(s) 804
PspN4I GGNNCC 2 cut(s) 801, 972
PspPI GGNCC 2 cut(s) 561, 760
RsaI GTAC 6 cut(s) 343, 887, 920, 972, 1061, 1121
RsaNI GTAC 6 cut(s) 342, 886, 919, 971, 1060, 1120
SaqAI TTAA 4 cut(s) 633, 638, 698, 738
SatI GCNGC 1 cut(s) 908
Sau3AI GATC 6 cut(s) 99, 206, 373, 438, 922, 957
Sau96I GGNCC 2 cut(s) 561, 760
SchI GAGTC 6 cut(s) 45, 718, 725, 836, 841, 884
SfaNI GCATC 2 cut(s) 162, 1168
SfcI CTRYAG 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 424
SinI GGWCC 2 cut(s) 561, 760
SphI GCATGC 1 cut(s) 1157
Sse9I AATT 6 cut(s) 71, 556, 567, 634, 813, 1018
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 1 cut(s) 855
SspMI CTAG 4 cut(s) 231, 243, 254, 939
StuI AGGCCT 1 cut(s) 313
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 3 cut(s) 9, 21, 797
TaqI TCGA 6 cut(s) 54, 223, 318, 424, 441, 456
TaqII GACCGA 2 cut(s) 777, 820
TasI AATT 6 cut(s) 71, 556, 567, 634, 813, 1018
TatI WGTACW 1 cut(s) 1059
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 4 cut(s) 633, 638, 698, 738
Tru9I TTAA 4 cut(s) 633, 638, 698, 738
TscAI CASTG 2 cut(s) 128, 579
TseFI GTSAC 3 cut(s) 367, 728, 876
TseI GCWGC 1 cut(s) 907
Tsp45I GTSAC 3 cut(s) 367, 728, 876
TspDTI ATGAA 4 cut(s) 60, 409, 549, 1011
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 2 cut(s) 128, 579
VpaK11BI GGWCC 2 cut(s) 561, 760
XapI RAATTY 3 cut(s) 71, 813, 1018
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 1 cut(s) 1157
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 414
XmnI GAANNNNTTC 2 cut(s) 75, 282
XspI CTAG 4 cut(s) 231, 243, 254, 939
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.