pycom01g06860

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000339
Physical Location & Seq
Reverse (-)
7412349 .. 7413705
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06860.2

Sequence Viewer

Length: 1095 bp
ATGAGCTCCTTAATTGAACCTAAGAAGCTTCTTCACATAGCCTTATTTCCATGGCTGGTATTAGGTCACATAATACCATTTCTTGAGGTTGCCAAGCACATAGCTCGGAGGGGTCACAAAGTTTCCTTCATATCCACCCCAAGAAACATCCAACGCCTTCCCAAAATCCCACCAGACTTAATTCCTTCGATCACCTTAGTCCAAATCCCGCCACCGTGCATCGAAAGCCTCCCGGAGAATGTAGAGGCCACCATGAACGTGCCATATGACCTAATCCCATTCCTAAAATTGGCTCGTGACAGACTTGAACAAGGTATTTTTGATTTCCTCCAAACTCACTCGCCCGATTGGATTATTCATGATTACACCCCTCACTGGTTACACACTATAGCTTCCAATCTTGGCATTCGTCGAGCTCATCTTAGTCTTTTCAATGCGTTTTCAGTATGTTTTTTTGGACCAACGGCCAAGAAAATGTTCGACAGAAAGCAAGAAAATGCATCTGGAATCACAGATTGGGATCGTATGGCGTCAACAATACAAGGTTGTCAAGTCTATCTTGTTCGAAGTTGTAGAGAGATCGTAGGGGATTGGCTCGATTTGCTTCCAGAGCTTCATGGGAGACCCGTGATTCCACTAGGGCCCGGTTGGTCAAAAGATGCTGATTCTGTCGAGCTGCCGGAGAGGTTTGAGGACCAGGCCAAGGGTCATGGGATTGTTTGGACAACTTGGGCACCTCAACACAAAATCTTGGCTCACAAGGCAACCGGGGGATTCTTGACACACTGCAGTTGGAGTTCACTCATAGAAGGACTACACTACGGTCAAGCTCTTATCATGTTGCCCTTCTTATATGACCAAGGGTTAAACGCCAGGTTTGGGGACAAGAAGATTGGAATTGAGGTGCCAAGAAACGAAGACGATGGATCGTTTATTAAGGACTGGGTGGCTGAGTCACTAAATTTGGCTGTGGTGGATGAGGAAGGGAAGGCTTACAGGGATGGAGCCAAAGAATACAGTGCATTATTTGGAGATAAGGACCTCCATGACAGATACATGGACAAATGCGTGGAGCATTTAGAAAAGCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

365

Amino Acids

41.39

Weight (kDa)

6.31

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 733, 904
AciI CCGC 1 cut(s) 209
AclWI GGATC 2 cut(s) 528, 934
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 961
AcyI GRCGYC 1 cut(s) 530
AfiI CCNNNNNNNGG 4 cut(s) 289, 375, 703, 879
AgsI TTSAA 3 cut(s) 17, 308, 433
AjnI CCWGG 2 cut(s) 696, 872
AjuI GAANNNNNNNTTGG 4 cut(s) 461, 493, 499, 531
AluBI AGCT 8 cut(s) 6, 28, 104, 392, 416, 613, 676, 830
AluI AGCT 8 cut(s) 6, 28, 104, 392, 416, 613, 676, 830
Alw21I GWGCWC 2 cut(s) 8, 418
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 2 cut(s) 528, 934
AoxI GGCC 4 cut(s) 246, 465, 641, 699
ApaI GGGCCC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 676
ApoI RAATTY 1 cut(s) 961
Asp700I GAANNNNTTC 1 cut(s) 476
AspS9I GGNCC 5 cut(s) 458, 641, 642, 694, 1039
AsuC2I CCSGG 3 cut(s) 233, 645, 769
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 565
AvaII GGWCC 3 cut(s) 458, 694, 1039
BaeGI GKGCMC 2 cut(s) 645, 736
BanI GGYRCC 2 cut(s) 733, 904
BanII GRGCYC 3 cut(s) 8, 418, 645
BauI CACGAG 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 924
Bbv12I GWGCWC 2 cut(s) 8, 418
BbvI GCAGC 1 cut(s) 663
BccI CCATC 2 cut(s) 917, 995
BceAI ACGGC 1 cut(s) 480
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 2 cut(s) 698, 874
BcnI CCSGG 3 cut(s) 233, 645, 769
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 2 cut(s) 387, 787
BisI GCNGC 1 cut(s) 677
BlsI GCNGC 1 cut(s) 678
Bme1390I CCNGG 5 cut(s) 233, 645, 698, 769, 874
Bme18I GGWCC 3 cut(s) 458, 694, 1039
BmgT120I GGNCC 5 cut(s) 458, 641, 642, 694, 1039
BmiI GGNNCC 4 cut(s) 643, 735, 906, 1006
BmrFI CCNGG 5 cut(s) 233, 645, 698, 769, 874
BmrI ACTGGG 1 cut(s) 952
BmsI GCATC 3 cut(s) 228, 509, 649
BmuI ACTGGG 1 cut(s) 952
BpiI GAAGAC 1 cut(s) 924
Bpu14I TTCGAA 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 3 cut(s) 233, 645, 769
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 4 cut(s) 50, 702, 768, 859
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 375, 703, 879
Bse1I ACTGG 2 cut(s) 380, 947
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 698, 874
BseDI CCNNGG 4 cut(s) 50, 702, 768, 859
BseGI GGATG 3 cut(s) 147, 982, 1006
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 4 cut(s) 289, 375, 703, 879
BseMII CTCAG 1 cut(s) 942
BseNI ACTGG 2 cut(s) 380, 947
BseSI GKGCMC 2 cut(s) 645, 736
BseXI GCAGC 1 cut(s) 663
BshFI GGCC 4 cut(s) 248, 467, 643, 701
BshNI GGYRCC 2 cut(s) 733, 904
BsiHKAI GWGCWC 2 cut(s) 8, 418
BsiSI CCGG 4 cut(s) 233, 645, 680, 768
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 4 cut(s) 289, 375, 703, 879
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 4 cut(s) 248, 467, 643, 701
Bso31I GGTCTC 1 cut(s) 616
Bsp119I TTCGAA 1 cut(s) 565
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 4 cut(s) 8, 418, 645, 736
Bsp143I GATC 4 cut(s) 189, 520, 579, 926
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 1 cut(s) 209
BspANI GGCC 4 cut(s) 248, 467, 643, 701
BspCNI CTCAG 1 cut(s) 943
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 4 cut(s) 643, 735, 906, 1006
BspMAI CTGCAG 1 cut(s) 791
BspPI GGATC 2 cut(s) 528, 934
BspT104I TTCGAA 1 cut(s) 565
BspT107I GGYRCC 2 cut(s) 733, 904
BspTNI GGTCTC 1 cut(s) 616
BsrI ACTGG 2 cut(s) 380, 947
BssECI CCNNGG 4 cut(s) 50, 702, 768, 859
BssMI GATC 4 cut(s) 189, 520, 579, 926
BssNI GRCGYC 1 cut(s) 530
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 3 cut(s) 50, 702, 859
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 698, 874
Bst4CI ACNGT 3 cut(s) 216, 824, 1019
BstACI GRCGYC 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 565
BstDEI CTNAG 4 cut(s) 21, 196, 422, 951
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 3 cut(s) 147, 982, 1006
BstKTI GATC 4 cut(s) 192, 523, 582, 929
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 4 cut(s) 189, 520, 579, 926
BstMWI GCNNNNNNNGC 4 cut(s) 225, 601, 610, 761
BstNI CCWGG 2 cut(s) 698, 874
BstSCI CCNGG 5 cut(s) 231, 643, 696, 767, 872
BstSFI CTRYAG 2 cut(s) 387, 787
BstSLI GKGCMC 2 cut(s) 645, 736
BstV1I GCAGC 1 cut(s) 663
BstV2I GAAGAC 1 cut(s) 924
BsuRI GGCC 4 cut(s) 248, 467, 643, 701
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 3 cut(s) 147, 982, 1006
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 3 cut(s) 373, 784, 1024
CciI TCATGA 1 cut(s) 358
Cfr13I GGNCC 5 cut(s) 458, 641, 642, 694, 1039
CseI GACGC 1 cut(s) 519
CviAII CATG 8 cut(s) 51, 253, 359, 617, 710, 838, 1046, 1057
DdeI CTNAG 4 cut(s) 21, 196, 422, 951
DpnI GATC 4 cut(s) 191, 522, 581, 928
DpnII GATC 4 cut(s) 189, 520, 579, 926
EaeI YGGCCR 1 cut(s) 465
Ecl136II GAGCTC 2 cut(s) 6, 416
Eco130I CCWWGG 3 cut(s) 50, 702, 859
Eco24I GRGCYC 3 cut(s) 8, 418, 645
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 3 cut(s) 458, 694, 1039
Eco53kI GAGCTC 2 cut(s) 6, 416
EcoICRI GAGCTC 2 cut(s) 6, 416
EcoO109I RGGNCCY 2 cut(s) 641, 1039
EcoRII CCWGG 2 cut(s) 696, 872
EcoT14I CCWWGG 3 cut(s) 50, 702, 859
EcoT22I ATGCAT 1 cut(s) 502
EcoT38I GRGCYC 3 cut(s) 8, 418, 645
ErhI CCWWGG 3 cut(s) 50, 702, 859
FaeI CATG 8 cut(s) 54, 256, 362, 620, 713, 841, 1049, 1060
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 1 cut(s) 896
FatI CATG 8 cut(s) 50, 252, 358, 616, 709, 837, 1045, 1056
FauI CCCGC 1 cut(s) 216
FauNDI CATATG 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 677
FokI GGATG 3 cut(s) 134, 989, 1013
FriOI GRGCYC 3 cut(s) 8, 418, 645
Fsp4HI GCNGC 1 cut(s) 677
FspBI CTAG 1 cut(s) 638
GluI GCNGC 1 cut(s) 677
HaeIII GGCC 4 cut(s) 248, 467, 643, 701
HapII CCGG 4 cut(s) 233, 645, 680, 768
HgaI GACGC 1 cut(s) 519
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 8 cut(s) 54, 256, 362, 620, 713, 841, 1049, 1060
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 5 cut(s) 507, 631, 665, 774, 953
HpaII CCGG 4 cut(s) 233, 645, 680, 768
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 534, 800
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 6 cut(s) 83, 296, 359, 504, 608, 778
Hpy8I GTNNAC 2 cut(s) 534, 800
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 7 cut(s) 136, 167, 195, 803, 856, 977, 982
HpyCH4III ACNGT 3 cut(s) 216, 824, 1019
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 219, 500, 789, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 601, 610, 761
HpyF3I CTNAG 4 cut(s) 21, 196, 422, 951
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 8 cut(s) 54, 256, 362, 620, 713, 841, 1049, 1060
Kzo9I GATC 4 cut(s) 189, 520, 579, 926
LmnI GCTCC 3 cut(s) 11, 1004, 1072
Lsp1109I GCAGC 1 cut(s) 663
LweI GCATC 3 cut(s) 228, 509, 649
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 5 cut(s) 65, 113, 296, 378, 954
MalI GATC 4 cut(s) 191, 522, 581, 928
MboI GATC 4 cut(s) 189, 520, 579, 926
MboII GAAGA 3 cut(s) 23, 901, 929
MhlI GDGCHC 4 cut(s) 8, 418, 645, 736
MluCI AATT 5 cut(s) 12, 180, 287, 897, 961
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 2 cut(s) 175, 773
Mph1103I ATGCAT 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 4 cut(s) 11, 179, 866, 936
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 4 cut(s) 233, 645, 680, 768
MspR9I CCNGG 5 cut(s) 233, 645, 698, 769, 874
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 2 cut(s) 698, 874
MwoI GCNNNNNNNGC 4 cut(s) 225, 601, 610, 761
NciI CCSGG 3 cut(s) 233, 645, 769
NcoI CCATGG 1 cut(s) 50
NdeI CATATG 1 cut(s) 265
NdeII GATC 4 cut(s) 189, 520, 579, 926
NlaIII CATG 8 cut(s) 54, 256, 362, 620, 713, 841, 1049, 1060
NlaIV GGNNCC 4 cut(s) 643, 735, 906, 1006
NmuCI GTSAC 4 cut(s) 65, 113, 296, 954
NsiI ATGCAT 1 cut(s) 502
NspV TTCGAA 1 cut(s) 565
PagI TCATGA 1 cut(s) 358
PctI GAATGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 4 cut(s) 507, 631, 665, 774
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 1 cut(s) 678
PleI GAGTC 1 cut(s) 961
PpsI GAGTC 1 cut(s) 961
PpuMI RGGWCCY 1 cut(s) 1039
Psp124BI GAGCTC 2 cut(s) 8, 418
Psp5II RGGWCCY 1 cut(s) 1039
Psp6I CCWGG 2 cut(s) 696, 872
PspGI CCWGG 2 cut(s) 696, 872
PspN4I GGNNCC 4 cut(s) 643, 735, 906, 1006
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 5 cut(s) 458, 641, 642, 694, 1039
PspPPI RGGWCCY 1 cut(s) 1039
PstI CTGCAG 1 cut(s) 791
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 2 cut(s) 8, 418
SaqAI TTAA 4 cut(s) 11, 179, 866, 936
SatI GCNGC 1 cut(s) 677
Sau3AI GATC 4 cut(s) 189, 520, 579, 926
Sau96I GGNCC 5 cut(s) 458, 641, 642, 694, 1039
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 5 cut(s) 233, 645, 698, 769, 874
SduI GDGCHC 4 cut(s) 8, 418, 645, 736
SfaNI GCATC 3 cut(s) 228, 509, 649
SfcI CTRYAG 2 cut(s) 387, 787
SfuI TTCGAA 1 cut(s) 565
SinI GGWCC 3 cut(s) 458, 694, 1039
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 5 cut(s) 12, 180, 287, 897, 961
SsiI CCGC 1 cut(s) 209
SspMI CTAG 1 cut(s) 638
SstI GAGCTC 2 cut(s) 8, 418
StyD4I CCNGG 5 cut(s) 231, 643, 696, 767, 872
StyI CCWWGG 3 cut(s) 50, 702, 859
TaaI ACNGT 3 cut(s) 216, 824, 1019
TaiI ACGT 1 cut(s) 261
TaqI TCGA 7 cut(s) 188, 222, 412, 480, 565, 597, 672
TasI AATT 5 cut(s) 12, 180, 287, 897, 961
TfiI GAWTC 4 cut(s) 507, 631, 665, 774
Tru1I TTAA 4 cut(s) 11, 179, 866, 936
Tru9I TTAA 4 cut(s) 11, 179, 866, 936
TscAI CASTG 3 cut(s) 380, 791, 1024
TseFI GTSAC 4 cut(s) 65, 113, 296, 954
TseI GCWGC 1 cut(s) 676
Tsp45I GTSAC 4 cut(s) 65, 113, 296, 954
TspDTI ATGAA 4 cut(s) 118, 269, 347, 605
TspRI CASTG 3 cut(s) 380, 791, 1024
VpaK11BI GGWCC 3 cut(s) 458, 694, 1039
XapI RAATTY 1 cut(s) 961
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.