Rmu_sc0003291.1_g000015

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003291.1
OG0000339
Physical Location & Seq
Forward (+)
72338 .. 73315
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003291.1_g000015.1.cds

Sequence Viewer

Length: 978 bp
ctgggaccaacatcaccggatctaatatctcgttacagtctaagaacacaacccgagcaactcactgtccctcctgaatggattcccttttcttcaaaagtagcttataggccttttgaggccaagaggttgttcaatattgctgccaagccaaaagcttctgctgtagaagctggaggcgttacggaaatgtttcgtatacaggcagctgttgaaggttgtcaaatttattttgttcgaacatgtaaagagatggaagcagagtggctcgatttgcttcaagaccttcatcagaaaactcttgtgattccggtaggtctattgccaccagaattacaacagagagatgaagatcaagaagatggcagcagctggtctagaattgctgaatggttggataaacaagagaaggagaccgtagtttacgttgcattgggaagtgaggctaatctaagtcaagaagagtttaatgaattggctcttggattagagctttctgggttgccattcttttgggcactgactaaactaccactaagtgaggatggtgaatcgttgaagttaccggacgggtttgtggaccgaacaaatggtcatgggattttctggacatcttgggctcctcagctcaaaatattgtcccacgagtcaatcggaggtttcttgactcactgtggttggagttcagtcatagaaggtctacattatggacgtccccttatcatgtttccagtcttgtgtgatcaagggctaaatgctaggttttgggacaagaaggttgggattgaggtaccaagagacgaagagactggatcgtttacgaggaacgcggtggctgagtcactgagtttggttgtcagagacggagaggggaaggcttacagagatggtgccaaagagtacagtaagttatttagggaccaagacctccatgacagatacatggacaaatgtgttgagtatttggaaattgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

325

Amino Acids

36.77

Weight (kDa)

4.84

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 715
Acc65I GGTACC 1 cut(s) 790
AccB1I GGYRCC 2 cut(s) 790, 890
AccI GTMKAC 2 cut(s) 199, 700
AccII CGCG 1 cut(s) 830
AciI CCGC 1 cut(s) 830
AclWI GGATC 2 cut(s) 27, 820
AcsI RAATTY 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 712
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 2 cut(s) 792, 902
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 5 cut(s) 96, 136, 215, 281, 559
AjuI GAANNNNNNNTTGG 4 cut(s) 116, 148, 465, 497
AluBI AGCT 7 cut(s) 104, 158, 173, 209, 372, 493, 628
AluI AGCT 7 cut(s) 104, 158, 173, 209, 372, 493, 628
Alw26I GTCTC 4 cut(s) 407, 792, 800, 855
AlwI GGATC 2 cut(s) 27, 820
AlwNI CAGNNNCTG 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 2 cut(s) 110, 120
ApeKI GCWGC 4 cut(s) 143, 206, 366, 369
ApoI RAATTY 1 cut(s) 225
ArsI GACNNNNNNTTYG 2 cut(s) 577, 609
Asp700I GAANNNNTTC 2 cut(s) 81, 192
Asp718I GGTACC 1 cut(s) 790
AspS9I GGNCC 3 cut(s) 5, 580, 919
AsuHPI GGTGA 2 cut(s) 6, 560
AsuII TTCGAA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 3 cut(s) 5, 580, 919
BaeGI GKGCMC 1 cut(s) 520
BanI GGYRCC 2 cut(s) 790, 890
BanII GRGCYC 1 cut(s) 622
BauI CACGAG 1 cut(s) 644
BbvCI CCTCAGC 1 cut(s) 624
BbvI GCAGC 4 cut(s) 130, 218, 378, 381
BccI CCATC 4 cut(s) 247, 356, 539, 881
BclI TGATCA 1 cut(s) 742
BcoDI GTCTC 4 cut(s) 407, 792, 800, 855
BfaI CTAG 2 cut(s) 378, 759
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 4 cut(s) 144, 207, 367, 370
BlsI GCNGC 4 cut(s) 145, 208, 368, 371
Bme18I GGWCC 3 cut(s) 5, 580, 919
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 3 cut(s) 5, 580, 919
BmiI GGNNCC 5 cut(s) 6, 621, 792, 892, 920
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 407
BsaWI WCCGGW 3 cut(s) 16, 310, 565
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bse1I ACTGG 2 cut(s) 731, 814
Bse8I GATNNNNATC 1 cut(s) 351
BseGI GGATG 1 cut(s) 550
BseJI GATNNNNATC 1 cut(s) 351
BseMII CTCAG 3 cut(s) 638, 828, 836
BseNI ACTGG 2 cut(s) 731, 814
BseRI GAGGAG 1 cut(s) 612
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 4 cut(s) 130, 218, 378, 381
Bsh1236I CGCG 1 cut(s) 830
BshFI GGCC 2 cut(s) 112, 122
BshNI GGYRCC 2 cut(s) 790, 890
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 3 cut(s) 17, 311, 566
BslFI GGGAC 6 cut(s) 18, 53, 625, 699, 782, 932
BsmAI GTCTC 4 cut(s) 407, 792, 800, 855
BsmBI CGTCTC 2 cut(s) 792, 855
BsmFI GGGAC 6 cut(s) 18, 53, 625, 699, 782, 932
BsnI GGCC 2 cut(s) 112, 122
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 520, 622
Bsp143I GATC 4 cut(s) 19, 352, 742, 812
BspACI CCGC 1 cut(s) 830
BspANI GGCC 2 cut(s) 112, 122
BspCNI CTCAG 3 cut(s) 637, 829, 837
BspFNI CGCG 1 cut(s) 830
BspLI GGNNCC 5 cut(s) 6, 621, 792, 892, 920
BspPI GGATC 2 cut(s) 27, 820
BspT104I TTCGAA 1 cut(s) 238
BspT107I GGYRCC 2 cut(s) 790, 890
BspTNI GGTCTC 1 cut(s) 407
BsrI ACTGG 2 cut(s) 731, 814
BssMI GATC 4 cut(s) 19, 352, 742, 812
BssNAI GTATAC 1 cut(s) 200
BssNI GRCGYC 1 cut(s) 712
BssSI CACGAG 1 cut(s) 644
Bst1107I GTATAC 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 644
Bst4CI ACNGT 5 cut(s) 38, 67, 418, 674, 905
Bst6I CTCTTC 2 cut(s) 456, 798
BstACI GRCGYC 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 238
BstDEI CTNAG 6 cut(s) 41, 452, 536, 624, 837, 845
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 1 cut(s) 830
BstKTI GATC 4 cut(s) 22, 355, 745, 815
BstMAI GTCTC 4 cut(s) 407, 792, 800, 855
BstMBI GATC 4 cut(s) 19, 352, 742, 812
BstMWI GCNNNNNNNGC 2 cut(s) 170, 274
BstNSI RCATGY 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 1 cut(s) 830
BstV1I GCAGC 4 cut(s) 130, 218, 378, 381
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 1 cut(s) 19
BstZ17I GTATAC 1 cut(s) 200
BsuRI GGCC 2 cut(s) 112, 122
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 4 cut(s) 63, 518, 670, 842
CaiI CAGNNNCTG 1 cut(s) 372
Cfr13I GGNCC 3 cut(s) 5, 580, 919
Csp6I GTAC 2 cut(s) 791, 901
CviAII CATG 5 cut(s) 243, 596, 724, 932, 943
CviQI GTAC 2 cut(s) 791, 901
DdeI CTNAG 6 cut(s) 41, 452, 536, 624, 837, 845
DpnI GATC 4 cut(s) 21, 354, 744, 814
DpnII GATC 4 cut(s) 19, 352, 742, 812
DraIII CACNNNGTG 1 cut(s) 539
Eam1104I CTCTTC 2 cut(s) 456, 798
EarI CTCTTC 2 cut(s) 456, 798
Eco147I AGGCCT 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 622
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 3 cut(s) 5, 580, 919
Eco88I CYCGRG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 622
Esp3I CGTCTC 2 cut(s) 792, 855
FaeI CATG 5 cut(s) 246, 599, 727, 935, 946
FaiI YATR 9 cut(s) 108, 200, 244, 597, 692, 708, 725, 933, 944
FaqI GGGAC 6 cut(s) 18, 53, 625, 699, 782, 932
FatI CATG 5 cut(s) 242, 595, 723, 931, 942
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 2 cut(s) 199, 700
Fnu4HI GCNGC 4 cut(s) 144, 207, 367, 370
FokI GGATG 1 cut(s) 557
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 4 cut(s) 144, 207, 367, 370
FspBI CTAG 2 cut(s) 378, 759
GluI GCNGC 4 cut(s) 144, 207, 367, 370
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 112, 122
HapII CCGG 3 cut(s) 17, 311, 566
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 5 cut(s) 246, 599, 727, 935, 946
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 6 cut(s) 82, 307, 551, 647, 667, 839
HpaII CCGG 3 cut(s) 17, 311, 566
HphI GGTGA 2 cut(s) 6, 560
Hpy166II GTNNAC 5 cut(s) 200, 424, 580, 701, 819
Hpy188I TCNGA 3 cut(s) 294, 656, 860
Hpy188III TCNNGA 7 cut(s) 74, 281, 356, 378, 458, 607, 664
Hpy8I GTNNAC 5 cut(s) 200, 424, 580, 701, 819
HpyAV CCTTC 6 cut(s) 209, 296, 403, 689, 769, 868
HpyCH4III ACNGT 5 cut(s) 38, 67, 418, 674, 905
HpyCH4IV ACGT 2 cut(s) 426, 712
HpyCH4V TGCA 1 cut(s) 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 274
HpyF3I CTNAG 6 cut(s) 41, 452, 536, 624, 837, 845
HpySE526I ACGT 2 cut(s) 426, 712
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 5 cut(s) 246, 599, 727, 935, 946
KpnI GGTACC 1 cut(s) 794
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 4 cut(s) 19, 352, 742, 812
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 4 cut(s) 130, 218, 378, 381
MaeI CTAG 2 cut(s) 378, 759
MaeII ACGT 2 cut(s) 426, 712
MaeIII GTNAC 4 cut(s) 32, 181, 561, 840
MalI GATC 4 cut(s) 21, 354, 744, 814
MboI GATC 4 cut(s) 19, 352, 742, 812
MboII GAAGA 5 cut(s) 84, 362, 371, 473, 815
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 520, 622
MluCI AATT 5 cut(s) 225, 332, 381, 473, 969
MlyI GAGTC 3 cut(s) 656, 661, 848
MmeI TCCRAC 2 cut(s) 375, 659
MroXI GAANNNNTTC 2 cut(s) 81, 192
MseI TTAA 2 cut(s) 468, 976
MspA1I CMGCKG 2 cut(s) 209, 372
MspI CCGG 3 cut(s) 17, 311, 566
MvnI CGCG 1 cut(s) 830
MwoI GCNNNNNNNGC 2 cut(s) 170, 274
NdeII GATC 4 cut(s) 19, 352, 742, 812
NlaIII CATG 5 cut(s) 246, 599, 727, 935, 946
NlaIV GGNNCC 5 cut(s) 6, 621, 792, 892, 920
NmuCI GTSAC 1 cut(s) 840
NspI RCATGY 1 cut(s) 246
NspV TTCGAA 1 cut(s) 238
PceI AGGCCT 1 cut(s) 112
PciI ACATGT 1 cut(s) 242
PdmI GAANNNNTTC 2 cut(s) 81, 192
PfeI GAWTC 3 cut(s) 82, 307, 551
PkrI GCNGC 4 cut(s) 145, 208, 368, 371
PleI GAGTC 3 cut(s) 655, 661, 847
PpsI GAGTC 3 cut(s) 655, 661, 847
PscI ACATGT 1 cut(s) 242
PspN4I GGNNCC 5 cut(s) 6, 621, 792, 892, 920
PspPI GGNCC 3 cut(s) 5, 580, 919
PstNI CAGNNNCTG 1 cut(s) 372
PsuI RGATCY 1 cut(s) 19
PvuII CAGCTG 2 cut(s) 209, 372
RsaI GTAC 2 cut(s) 792, 902
RsaNI GTAC 2 cut(s) 791, 901
SaqAI TTAA 2 cut(s) 468, 976
SatI GCNGC 4 cut(s) 144, 207, 367, 370
Sau3AI GATC 4 cut(s) 19, 352, 742, 812
Sau96I GGNCC 3 cut(s) 5, 580, 919
SchI GAGTC 3 cut(s) 656, 661, 848
SduI GDGCHC 2 cut(s) 520, 622
SfcI CTRYAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 3 cut(s) 5, 580, 919
Sse9I AATT 5 cut(s) 225, 332, 381, 473, 969
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 1 cut(s) 830
SspI AATATT 2 cut(s) 139, 636
SspMI CTAG 2 cut(s) 378, 759
StuI AGGCCT 1 cut(s) 112
TaaI ACNGT 5 cut(s) 38, 67, 418, 674, 905
TaiI ACGT 2 cut(s) 429, 715
TaqI TCGA 2 cut(s) 238, 270
TaqII GACCGA 1 cut(s) 597
TasI AATT 5 cut(s) 225, 332, 381, 473, 969
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 3 cut(s) 82, 307, 551
Tru1I TTAA 2 cut(s) 468, 976
Tru9I TTAA 2 cut(s) 468, 976
TscAI CASTG 4 cut(s) 70, 525, 677, 849
TseFI GTSAC 1 cut(s) 840
TseI GCWGC 4 cut(s) 143, 206, 366, 369
Tsp45I GTSAC 1 cut(s) 840
TspDTI ATGAA 3 cut(s) 278, 363, 486
TspGWI ACGGA 2 cut(s) 200, 879
TspRI CASTG 4 cut(s) 70, 525, 677, 849
VpaK11BI GGWCC 3 cut(s) 5, 580, 919
XapI RAATTY 1 cut(s) 225
XbaI TCTAGA 1 cut(s) 377
XceI RCATGY 1 cut(s) 246
XmiI GTMKAC 2 cut(s) 199, 700
XmnI GAANNNNTTC 2 cut(s) 81, 192
XspI CTAG 2 cut(s) 378, 759
ZraI GACGTC 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.