Rroxscaffold_2G00132240

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000339
Physical Location & Seq
Forward (+)
69276201 .. 69278250
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132240.1

Sequence Viewer

Length: 825 bp
ATGATAAGGCAACGAGGCGTCCAAGGCGACGAGGCTTCGAGGCGTCGTAGGGCGTACGTGCCGGTTTGGTTTCCGAGACGACATCCCTTCGAGTTCGATTTGGATTTGGATTTGGATTTTGGAGTTCGATTTTGGAGACTTGGAGTTCAATTTGGAGTTCGATTTGCAAACTTGAAGAGGTACAAGATTTCAAGATTGTTGCTCCGTATCATTGATGAATATGTTGCTCGTATCATTGCTTTGTATATGTTGGCTTACGCCTTATGCGCCTTATGCCTCAAGGCTGCAAGGCTCTCCGAAACGCCTCGGTTCGAAGTTGCAAAAGAGATCGAGGGTGAGTGGCTGGATTTGGCTCAGGATATAATTCATCCAACACCTTTAGTGCTTCCAGTGGGGTTACTGCCACCGATAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGCTGGACTATAATTGTCGACTGGTTGAACAAGCAAGAGAAGGGGACTGTTGTTTATGTTGCGTTAGGAACTGAAGTGAATCCAAGCCGAGAAGACTTCACAGAATTGGCTCTGGGATTGGAACTTTGGCTAAATGCTAGGCTTTGGGACAAGAAGGTTGGAATTGAGGTACCGAGAGATGAGCAGAGTGGATCGTTTATGAGGGATTCGGTGGCCAAGTCACTGAAATTGGTTATGGTGGAGGAGGATGGAAAGGCTTATAGGGATGGGGCTAAGGAATTTAGTGCAACATTCAGAGACAGAGAGCTTCAAGATAGATACATGGACACATTCTTGGACTATTTAGAAAAGCATAAGAAAGGGAATGAGTTTGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

274

Amino Acids

32.01

Weight (kDa)

5.5

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 613
AccI GTMKAC 1 cut(s) 462
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 722
AcuI CTGAAG 1 cut(s) 537
AcyI GRCGYC 2 cut(s) 18, 43
AfaI GTAC 3 cut(s) 56, 182, 615
AgsI TTSAA 5 cut(s) 149, 175, 192, 472, 755
AluBI AGCT 2 cut(s) 447, 751
AluI AGCT 2 cut(s) 447, 751
Alw26I GTCTC 3 cut(s) 70, 130, 735
AlwI GGATC 1 cut(s) 643
AoxI GGCC 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 722
Asp718I GGTACC 1 cut(s) 613
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 312
BalI TGGCCA 1 cut(s) 659
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 435, 543
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 686, 704
BclI TGATCA 1 cut(s) 817
BcoDI GTCTC 3 cut(s) 70, 130, 735
BfaI CTAG 1 cut(s) 582
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 435, 543
Bpu10I CCTNAGC 2 cut(s) 354, 717
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 58
BsaHI GRCGYC 2 cut(s) 18, 43
BsaJI CCNNGG 2 cut(s) 22, 305
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 389, 470
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 22, 305
BseGI GGATG 4 cut(s) 82, 367, 697, 715
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 2 cut(s) 389, 470
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 659
BshNI GGYRCC 1 cut(s) 613
BsiSI CCGG 1 cut(s) 62
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 2 cut(s) 502, 605
BsmAI GTCTC 3 cut(s) 70, 130, 735
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 2 cut(s) 502, 605
BsnI GGCC 1 cut(s) 659
Bsp119I TTCGAA 1 cut(s) 312
Bsp143I GATC 3 cut(s) 327, 635, 817
BspANI GGCC 1 cut(s) 659
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 615
BspPI GGATC 1 cut(s) 643
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 389, 470
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 22, 305
BssMI GATC 3 cut(s) 327, 635, 817
BssNI GRCGYC 2 cut(s) 18, 43
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 2 cut(s) 18, 43
BstBAI YACGTR 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 354, 717
BstF5I GGATG 4 cut(s) 82, 367, 697, 715
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 330, 638, 820
BstMAI GTCTC 3 cut(s) 70, 130, 735
BstMBI GATC 3 cut(s) 327, 635, 817
BstMWI GCNNNNNNNGC 3 cut(s) 24, 266, 273
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 2 cut(s) 435, 543
BsuRI GGCC 1 cut(s) 659
BtsCI GGATG 4 cut(s) 82, 367, 697, 715
BtsIMutI CAGTG 2 cut(s) 396, 665
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 61
CseI GACGC 2 cut(s) 7, 32
Csp6I GTAC 3 cut(s) 55, 181, 614
CviAII CATG 1 cut(s) 766
CviQI GTAC 3 cut(s) 55, 181, 614
DdeI CTNAG 2 cut(s) 354, 717
DpnI GATC 3 cut(s) 329, 637, 819
DpnII GATC 3 cut(s) 327, 635, 817
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 1 cut(s) 769
FaqI GGGAC 2 cut(s) 502, 605
FatI CATG 1 cut(s) 765
FbaI TGATCA 1 cut(s) 817
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 4 cut(s) 69, 354, 704, 722
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 659
HapII CCGG 1 cut(s) 62
HgaI GACGC 2 cut(s) 7, 32
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 2 cut(s) 18, 43
Hin1II CATG 1 cut(s) 769
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 2 cut(s) 523, 650
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 4 cut(s) 75, 298, 424, 740
Hpy188III TCNNGA 3 cut(s) 192, 356, 755
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 2 cut(s) 32, 48
HpyAV CCTTC 3 cut(s) 97, 478, 592
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 167, 287, 320, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 266, 273
HpyF3I CTNAG 2 cut(s) 354, 717
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 2 cut(s) 18, 43
Hsp92II CATG 1 cut(s) 769
HspAI GCGC 1 cut(s) 267
KpnI GGTACC 1 cut(s) 617
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 3 cut(s) 327, 635, 817
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 75, 329, 341, 402, 433, 451, 542
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 396, 663
MalI GATC 3 cut(s) 329, 637, 819
MboI GATC 3 cut(s) 327, 635, 817
MboII GAAGA 3 cut(s) 187, 440, 548
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 7 cut(s) 149, 363, 456, 548, 606, 671, 722
MluNI TGGCCA 1 cut(s) 659
MmeI TCCRAC 2 cut(s) 395, 583
Mox20I TGGCCA 1 cut(s) 659
MscI TGGCCA 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 659
MspI CCGG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 24, 266, 273
NdeII GATC 3 cut(s) 327, 635, 817
NlaIII CATG 1 cut(s) 769
NlaIV GGNNCC 1 cut(s) 615
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 1 cut(s) 663
NspV TTCGAA 1 cut(s) 312
PfeI GAWTC 2 cut(s) 523, 650
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 58
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 615
RsaI GTAC 3 cut(s) 56, 182, 615
RsaNI GTAC 3 cut(s) 55, 181, 614
SalI GTCGAC 1 cut(s) 461
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 3 cut(s) 327, 635, 817
SetI ASST 7 cut(s) 60, 182, 379, 449, 603, 615, 753
SfuI TTCGAA 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 7 cut(s) 149, 363, 456, 548, 606, 671, 722
SspMI CTAG 1 cut(s) 582
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 1 cut(s) 60
TaqI TCGA 8 cut(s) 38, 90, 96, 127, 160, 312, 330, 462
TasI AATT 7 cut(s) 149, 363, 456, 548, 606, 671, 722
TfiI GAWTC 2 cut(s) 523, 650
TscAI CASTG 2 cut(s) 396, 672
TseFI GTSAC 1 cut(s) 663
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 663
TspDTI ATGAA 3 cut(s) 231, 356, 441
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 396, 672
XapI RAATTY 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.