Rorug02G0169500

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000339
Physical Location & Seq
Reverse (-)
15206466 .. 15212520
6055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0169500.1

Sequence Viewer

Length: 933 bp
ATGTCGTCGTCAAATTCTCCGTGCGCAGCCTGCAAATTTCTCAGGCGCAAGTGCACCCAGGAGTGCGTGTTTGCGCCGTACTTCCCGCCGGACCAGCCGCAGAAATTTGCCAACGTTCACAAGGTGTTTGGGGCCAGCAATGTTGCCAAGATTCTAAACGAGCTGAGCGCCACGCAGCGCGAGGACGCGGTGAACTCCTTGGCCTACGAGGCCGAGGCCCGTCTCCGCGACCCCGTTTACGGCTGCGTCGGCCTCATTTCTATTCTTCAGCAGAGATTGAAGCAAGTCCAGCTCGATCTATACAATGCCAGAAAGGAGCTGGCTACTTACATGGGCCCGCAGGCCATGCTCTCGATTCTTCAGCCGACATCTTACATGCCGCAGCAGATTCAGGGCGGGAATGCCTCCTCTTCCTCGGTGGTTGTGCCGTACAACATGTCGTCTATGATGGGTATTCCGACCGGGGCAGCCTCCGGCAGCGGTGGGCAGTTAATGGTGAGAGAACAACAGCAGCAGCAGCAGCAGCAGATTTTCGAGGCTCAGCAATTGTTGGCAGCGAGAGAGCAGCAGGAGATGTTGAGAAGCTTTGAGCAGAACAAACAGGGAGCATTGCAGGGTCAAGAACCGCCGCATCATCTGAGGTTTAACAGTGGGTTCGACTCGGTCAGTCAGATGAGTCCTACTTCAGCAGCAGCTAATAATGCTAATATCTCACCTGCTTTGGCTCTGGGCTTTGATCCTAACCCTTATCAGATTCAGCAACAACAAGAACCTCACCACCACCACCACCATCTCCAGCTTCAGGCTTTGCTTCAATCCCAACAGCAACCGCAGCAGCAGCAGCAATCGCAGCAACAACAACCACCGCAGCTGCTGCCGCAGAAGGTCGAAGGCGAGGATGGCAGAAGTAGGAGTGTGGGCCCATCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

310

Amino Acids

34.31

Weight (kDa)

7.11

Isoelectric Point (pI)

87.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 103 1.6e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 724
Acc16I TGCGCA 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 724
AccII CGCG 3 cut(s) 180, 188, 228
AclI AACGTT 1 cut(s) 114
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 3 cut(s) 13, 35, 104
AcuI CTGAAG 4 cut(s) 251, 344, 669, 785
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 2 cut(s) 80, 431
AfiI CCNNNNNNNGG 2 cut(s) 239, 802
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 280, 815
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 7 cut(s) 163, 292, 319, 585, 695, 799, 871
AluI AGCT 7 cut(s) 163, 292, 319, 585, 695, 799, 871
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 227
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 1 cut(s) 731
AlwNI CAGNNNCTG 1 cut(s) 874
AoxI GGCC 8 cut(s) 132, 201, 210, 216, 250, 334, 342, 919
ApaI GGGCCC 2 cut(s) 338, 923
ApaLI GTGCAC 1 cut(s) 52
ApoI RAATTY 3 cut(s) 13, 35, 104
AspLEI GCGC 5 cut(s) 26, 48, 76, 170, 180
AspS9I GGNCC 7 cut(s) 91, 132, 217, 334, 335, 919, 920
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 4 cut(s) 202, 508, 705, 767
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 3 cut(s) 56, 338, 923
BanII GRGCYC 2 cut(s) 338, 923
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 4 cut(s) 442, 798, 893, 931
BceAI ACGGC 3 cut(s) 61, 256, 412
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 724
BglI GCCNNNNNGGC 1 cut(s) 209
BlpI GCTNAGC 2 cut(s) 164, 540
Bme1390I CCNGG 2 cut(s) 59, 463
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 7 cut(s) 91, 132, 217, 334, 335, 919, 920
BmiI GGNNCC 3 cut(s) 133, 336, 921
BmrFI CCNGG 2 cut(s) 59, 463
BmsI GCATC 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 779
Bpu1102I GCTNAGC 2 cut(s) 164, 540
BpuMI CCSGG 1 cut(s) 463
BsaJI CCNNGG 5 cut(s) 57, 198, 213, 414, 462
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 802
Bse3DI GCAATG 2 cut(s) 145, 608
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 5 cut(s) 57, 198, 213, 414, 462
BseGI GGATG 1 cut(s) 904
BseLI CCNNNNNNNGG 2 cut(s) 239, 802
BseMI GCAATG 2 cut(s) 145, 608
BseMII CTCAG 4 cut(s) 55, 155, 554, 629
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 3 cut(s) 56, 338, 923
Bsh1236I CGCG 3 cut(s) 180, 188, 228
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 8 cut(s) 134, 203, 212, 218, 252, 336, 344, 921
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 3 cut(s) 89, 462, 474
BslI CCNNNNNNNGG 2 cut(s) 239, 802
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 8 cut(s) 134, 203, 212, 218, 252, 336, 344, 921
Bsp120I GGGCCC 2 cut(s) 334, 919
Bsp1286I GDGCHC 3 cut(s) 56, 338, 923
Bsp143I GATC 2 cut(s) 295, 736
Bsp1720I GCTNAGC 2 cut(s) 164, 540
BspANI GGCC 8 cut(s) 134, 203, 212, 218, 252, 336, 344, 921
BspCNI CTCAG 4 cut(s) 54, 156, 553, 630
BspFNI CGCG 3 cut(s) 180, 188, 228
BspLI GGNNCC 3 cut(s) 133, 336, 921
BspMI ACCTGC 1 cut(s) 724
BspPI GGATC 1 cut(s) 731
BsrDI GCAATG 2 cut(s) 145, 608
BssECI CCNNGG 5 cut(s) 57, 198, 213, 414, 462
BssMI GATC 2 cut(s) 295, 736
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 1 cut(s) 415
BstAPI GCANNNNNTGC 2 cut(s) 346, 874
BstC8I GCNNGC 5 cut(s) 31, 136, 321, 338, 342
BstDEI CTNAG 4 cut(s) 41, 164, 540, 638
BstF5I GGATG 1 cut(s) 904
BstFNI CGCG 3 cut(s) 180, 188, 228
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 5 cut(s) 26, 48, 76, 170, 180
BstKTI GATC 2 cut(s) 298, 739
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 295, 736
BstMCI CGRYCG 1 cut(s) 462
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 2 cut(s) 379, 439
BstSCI CCNGG 2 cut(s) 57, 461
BstSLI GKGCMC 3 cut(s) 56, 338, 923
BstUI CGCG 3 cut(s) 180, 188, 228
BsuRI GGCC 8 cut(s) 134, 203, 212, 218, 252, 336, 344, 921
BtsCI GGATG 1 cut(s) 904
BtsIMutI CAGTG 1 cut(s) 655
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 5 cut(s) 31, 136, 321, 338, 342
CaiI CAGNNNCTG 1 cut(s) 874
CfoI GCGC 5 cut(s) 26, 48, 76, 170, 180
Cfr13I GGNCC 7 cut(s) 91, 132, 217, 334, 335, 919, 920
CseI GACGC 2 cut(s) 194, 235
Csp6I GTAC 2 cut(s) 79, 430
CviAII CATG 4 cut(s) 331, 346, 376, 436
CviQI GTAC 2 cut(s) 79, 430
DdeI CTNAG 4 cut(s) 41, 164, 540, 638
DpnI GATC 2 cut(s) 297, 738
DpnII GATC 2 cut(s) 295, 736
DraIII CACNNNGTG 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 338, 923
Eco47I GGWCC 1 cut(s) 91
Eco57I CTGAAG 4 cut(s) 251, 344, 669, 785
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 2 cut(s) 338, 923
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 4 cut(s) 334, 349, 379, 439
FaiI YATR 6 cut(s) 301, 332, 347, 377, 437, 446
FatI CATG 4 cut(s) 330, 345, 375, 435
FauI CCCGC 3 cut(s) 93, 345, 389
FokI GGATG 1 cut(s) 911
FriOI GRGCYC 2 cut(s) 338, 923
FspI TGCGCA 1 cut(s) 25
GlaI GCGC 5 cut(s) 25, 47, 75, 169, 179
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 8 cut(s) 134, 203, 212, 218, 252, 336, 344, 921
HapII CCGG 3 cut(s) 89, 462, 474
HgaI GACGC 2 cut(s) 194, 235
HhaI GCGC 5 cut(s) 26, 48, 76, 170, 180
Hin1II CATG 4 cut(s) 334, 349, 379, 439
Hin6I GCGC 5 cut(s) 24, 46, 74, 168, 178
HinP1I GCGC 5 cut(s) 24, 46, 74, 168, 178
HindIII AAGCTT 1 cut(s) 583
HinfI GANTC 6 cut(s) 151, 355, 388, 659, 676, 754
HpaII CCGG 3 cut(s) 89, 462, 474
HphI GGTGA 4 cut(s) 202, 508, 705, 767
Hpy166II GTNNAC 4 cut(s) 54, 118, 193, 238
Hpy188I TCNGA 4 cut(s) 459, 639, 672, 753
Hpy188III TCNNGA 2 cut(s) 352, 620
Hpy8I GTNNAC 4 cut(s) 54, 118, 193, 238
Hpy99I CGWCG 2 cut(s) 10, 251
HpyAV CCTTC 2 cut(s) 877, 884
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 33, 54, 613
HpyF3I CTNAG 4 cut(s) 41, 164, 540, 638
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 4 cut(s) 334, 349, 379, 439
HspAI GCGC 5 cut(s) 24, 46, 74, 168, 178
Kzo9I GATC 2 cut(s) 295, 736
LmnI GCTCC 2 cut(s) 316, 605
LweI GCATC 1 cut(s) 640
MaeII ACGT 1 cut(s) 114
MalI GATC 2 cut(s) 297, 738
MboI GATC 2 cut(s) 295, 736
MboII GAAGA 3 cut(s) 257, 350, 402
MfeI CAATTG 1 cut(s) 545
MhlI GDGCHC 3 cut(s) 56, 338, 923
MluCI AATT 4 cut(s) 13, 35, 104, 545
MlyI GAGTC 2 cut(s) 653, 685
MmeI TCCRAC 1 cut(s) 482
MseI TTAA 2 cut(s) 491, 645
MspA1I CMGCKG 2 cut(s) 480, 871
MspI CCGG 3 cut(s) 89, 462, 474
MspR9I CCNGG 2 cut(s) 59, 463
MunI CAATTG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 3 cut(s) 180, 188, 228
NciI CCSGG 1 cut(s) 463
NdeII GATC 2 cut(s) 295, 736
NlaIII CATG 4 cut(s) 334, 349, 379, 439
NlaIV GGNNCC 3 cut(s) 133, 336, 921
NmeAIII GCCGAG 1 cut(s) 238
NsbI TGCGCA 1 cut(s) 25
NspI RCATGY 2 cut(s) 379, 439
PaqCI CACCTGC 1 cut(s) 724
PciI ACATGT 1 cut(s) 435
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 4 cut(s) 151, 355, 388, 754
PflFI GACNNNGTC 1 cut(s) 662
PleI GAGTC 2 cut(s) 653, 684
PpsI GAGTC 2 cut(s) 653, 684
PscI ACATGT 1 cut(s) 435
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 133, 336, 921
PspOMI GGGCCC 2 cut(s) 334, 919
PspPI GGNCC 7 cut(s) 91, 132, 217, 334, 335, 919, 920
PstNI CAGNNNCTG 1 cut(s) 874
PsyI GACNNNGTC 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 871
RsaI GTAC 2 cut(s) 80, 431
RsaNI GTAC 2 cut(s) 79, 430
SaqAI TTAA 2 cut(s) 491, 645
Sau3AI GATC 2 cut(s) 295, 736
Sau96I GGNCC 7 cut(s) 91, 132, 217, 334, 335, 919, 920
SchI GAGTC 2 cut(s) 653, 685
ScrFI CCNGG 2 cut(s) 59, 463
SduI GDGCHC 3 cut(s) 56, 338, 923
SfaNI GCATC 1 cut(s) 640
SfiI GGCCNNNNNGGCC 1 cut(s) 209
SinI GGWCC 1 cut(s) 91
Sse9I AATT 4 cut(s) 13, 35, 104, 545
StyD4I CCNGG 2 cut(s) 57, 461
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 1 cut(s) 117
TaqI TCGA 5 cut(s) 294, 353, 534, 657, 888
TaqII GACCGA 1 cut(s) 652
TasI AATT 4 cut(s) 13, 35, 104, 545
TauI GCSGC 4 cut(s) 100, 382, 631, 880
TfiI GAWTC 4 cut(s) 151, 355, 388, 754
Tru1I TTAA 2 cut(s) 491, 645
Tru9I TTAA 2 cut(s) 491, 645
TscAI CASTG 1 cut(s) 655
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 655
Tth111I GACNNNGTC 1 cut(s) 662
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 3 cut(s) 13, 35, 104
XceI RCATGY 2 cut(s) 379, 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.