FvH4_1g19402

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000339
Physical Location & Seq
Forward (+)
11637872 .. 11639670
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19402.t1

Sequence Viewer

Length: 411 bp
ATGGCTCTTCATAACTACATAAGAAAGTATGCTCACCAAGATCATGATTTTGATGAAAGTGATGATTTCCAAAGTGAAGAGATTAGTGAAGATATGGAGGACAATGAACATGAAGAAGATGGGATGGGAAGACAAGAAATGGAGGTGTTAAGAAACACCATTGCACAAATCTTGTATGATCAAGGGCTAAATGCCAGGTTTTGGGACAAGAAGGTTGGGATTGAGCTACAAAGAGATGAAGAGACTGGATCGTTTACGAGGGTCACCATGGCTGAGGCATTGAGTTTGGTCGTCACGGATGAAGAGGGGAAGGCATACATAGATGGTGCCAAGGAGTACAGTAAGTTATTTAGAGACAGAAACCTCCATGACAGATACATGGACAAATGTATTTCGAAATTCATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

137

Amino Acids

16.07

Weight (kDa)

4.57

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 201
AclWI GGATC 1 cut(s) 256
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 201
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 2 cut(s) 236, 348
AlwI GGATC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 26, 256
AsuII TTCGAA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 273
BccI CCATC 3 cut(s) 113, 118, 317
BciT130I CCWGG 1 cut(s) 196
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 236, 348
Bme1390I CCNGG 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 267, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 267, 330
BseGI GGATG 2 cut(s) 129, 304
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 326
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 2 cut(s) 236, 348
BsmFI GGGAC 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 395
Bsp143I GATC 3 cut(s) 40, 178, 248
Bsp19I CCATGG 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 267, 330
BssMI GATC 3 cut(s) 40, 178, 248
BssT1I CCWWGG 2 cut(s) 267, 330
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 4 cut(s) 12, 72, 234, 297
BstBI TTCGAA 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 2 cut(s) 129, 304
BstKTI GATC 3 cut(s) 43, 181, 251
BstMAI GTCTC 2 cut(s) 236, 348
BstMBI GATC 3 cut(s) 40, 178, 248
BstNI CCWGG 1 cut(s) 196
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 129, 304
CciI TCATGA 1 cut(s) 43
Csp6I GTAC 1 cut(s) 337
CviAII CATG 5 cut(s) 44, 110, 268, 368, 379
CviJI RGCY 4 cut(s) 5, 187, 226, 272
CviKI_1 RGCY 4 cut(s) 5, 187, 226, 272
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 42, 180, 250
DpnII GATC 3 cut(s) 40, 178, 248
Eam1104I CTCTTC 4 cut(s) 12, 72, 234, 297
EarI CTCTTC 4 cut(s) 12, 72, 234, 297
Eco130I CCWWGG 2 cut(s) 267, 330
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 267, 330
ErhI CCWWGG 2 cut(s) 267, 330
FaeI CATG 5 cut(s) 47, 113, 271, 371, 382
FaqI GGGAC 1 cut(s) 218
FatI CATG 5 cut(s) 43, 109, 267, 367, 378
FbaI TGATCA 1 cut(s) 178
FokI GGATG 2 cut(s) 136, 311
Hin1II CATG 5 cut(s) 47, 113, 271, 371, 382
HphI GGTGA 2 cut(s) 26, 256
Hpy166II GTNNAC 1 cut(s) 255
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 205, 304
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 5 cut(s) 47, 113, 271, 371, 382
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 40, 178, 248
LguI GCTCTTC 1 cut(s) 12
LpnPI CCDG 3 cut(s) 181, 208, 231
MaeIII GTNAC 2 cut(s) 262, 292
MalI GATC 3 cut(s) 42, 180, 250
MboI GATC 3 cut(s) 40, 178, 248
MboII GAAGA 7 cut(s) 89, 101, 125, 128, 141, 251, 314
MluCI AATT 1 cut(s) 398
MnlI CCTC 6 cut(s) 91, 136, 252, 268, 298, 374
MseI TTAA 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 267
NdeII GATC 3 cut(s) 40, 178, 248
NlaIII CATG 5 cut(s) 47, 113, 271, 371, 382
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 2 cut(s) 262, 292
NspV TTCGAA 1 cut(s) 395
PagI TCATGA 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 194
PspEI GGTNACC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 328
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 3 cut(s) 40, 178, 248
ScrFI CCNGG 1 cut(s) 196
SetI ASST 5 cut(s) 147, 200, 216, 228, 366
SfuI TTCGAA 1 cut(s) 395
Sse9I AATT 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 2 cut(s) 267, 330
TaaI ACNGT 1 cut(s) 341
TaqI TCGA 1 cut(s) 395
TasI AATT 1 cut(s) 398
TatI WGTACW 1 cut(s) 336
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseFI GTSAC 2 cut(s) 262, 292
Tsp45I GTSAC 2 cut(s) 262, 292
TspDTI ATGAA 6 cut(s) 69, 120, 126, 252, 315, 391
TspGWI ACGGA 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 201
XapI RAATTY 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.