Rh2DG227900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000339
Physical Location & Seq
Forward (+)
22522419 .. 22522676
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG227900.1

Sequence Viewer

Length: 258 bp
ATGTATGATCAAGGGCTAATTGCTAGGTTTTGGGACAAGAAGATCGGGATAGAGGTACCGAGAGACGAAGAGAGTGGACGGTTTACAAGGAACGAGTTGGCGAATTCATTGAATTTGGTTGTGGTGGATGAGGAGGGGAAGCCATACAGAGATGGGGCTAATGAATATAGTGAGTTGTTTAGGGACAAGGAACTCCATGATAAATACATGGACAAATGCGTGGAGTATCTGGAAATGCATGCGCATCATGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

85

Amino Acids

10.12

Weight (kDa)

4.88

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AcsI RAATTY 2 cut(s) 103, 112
AfaI GTAC 1 cut(s) 57
AgsI TTSAA 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 103, 112
Asp718I GGTACC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 55
BccI CCATC 1 cut(s) 146
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 253
BseGI GGATG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 55
BslFI GGGAC 2 cut(s) 47, 197
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 47, 197
Bsp143I GATC 2 cut(s) 7, 42
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BssMI GATC 2 cut(s) 7, 42
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 240
BstF5I GGATG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 10, 45
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 7, 42
BstNSI RCATGY 1 cut(s) 242
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 247
CfoI GCGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 56
CviAII CATG 4 cut(s) 197, 208, 239, 248
CviJI RGCY 3 cut(s) 16, 142, 158
CviKI_1 RGCY 3 cut(s) 16, 142, 158
CviQI GTAC 1 cut(s) 56
DpnI GATC 2 cut(s) 9, 44
DpnII GATC 2 cut(s) 7, 42
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 4 cut(s) 200, 211, 242, 251
FaiI YATR 7 cut(s) 6, 145, 168, 198, 209, 240, 249
FaqI GGGAC 2 cut(s) 47, 197
FatI CATG 4 cut(s) 196, 207, 238, 247
FbaI TGATCA 1 cut(s) 7
FokI GGATG 1 cut(s) 140
FspAI RTGCGCAY 1 cut(s) 243
FspBI CTAG 1 cut(s) 24
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 244
Hin1II CATG 4 cut(s) 200, 211, 242, 251
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 77, 84
Hpy188III TCNNGA 3 cut(s) 46, 230, 248
Hpy8I GTNNAC 2 cut(s) 77, 84
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 238
Hsp92II CATG 4 cut(s) 200, 211, 242, 251
HspAI GCGC 1 cut(s) 242
KpnI GGTACC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 42
LpnPI CCDG 1 cut(s) 215
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 24
MalI GATC 2 cut(s) 9, 44
MboI GATC 2 cut(s) 7, 42
MboII GAAGA 2 cut(s) 52, 80
MluCI AATT 3 cut(s) 18, 103, 112
MnlI CCTC 4 cut(s) 46, 124, 127, 244
Mph1103I ATGCAT 1 cut(s) 240
NdeII GATC 2 cut(s) 7, 42
NlaIII CATG 4 cut(s) 200, 211, 242, 251
NlaIV GGNNCC 1 cut(s) 57
NsbI TGCGCA 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 1 cut(s) 242
PaeI GCATGC 1 cut(s) 242
PagI TCATGA 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 57
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 7, 42
SetI ASST 3 cut(s) 29, 57, 255
SfaNI GCATC 1 cut(s) 253
SphI GCATGC 1 cut(s) 242
Sse9I AATT 3 cut(s) 18, 103, 112
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 81
TasI AATT 3 cut(s) 18, 103, 112
TspDTI ATGAA 2 cut(s) 96, 177
XapI RAATTY 2 cut(s) 103, 112
XceI RCATGY 1 cut(s) 242
XspI CTAG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.