Rh2DG229200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000339
Physical Location & Seq
Reverse (-)
22669342 .. 22671347
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG229200.1

Sequence Viewer

Length: 1416 bp
ATGAGCTCCACCACTGATCCCAAGAAACTTCACATAACCTTGTTTCCATGGCTAGCCTTTGGTCACATAATACCATTTCTTGAGGTTGCAAAGTGCATAGCTCGAAGAGGGCATAAGGTTTCCTTCATCTCCACCCCAAGAAACATCCAACGCCTCCCCAAAATTCCTACAAACTTAACCCCTTTGATAAATTTAGTCCAACTCCCACTTCCACAGGTCGAAAACCTCCCAGAAAACGCAGAAGCCAGCATGGATGTCCCATACCACATTATCCCATACCTCAAGCTAGCACATGATGGACTTGAAGCTGGTATTTCTGAATTCCTAGAATCTCATACTCCAGATTGGATTATTCATGATTATTCCCCTCACTGGTTGCCCCCAATAGCTACTAAGCTAGGCATATCACGAGCCTATTTCAGCACCCTCAACGCTGCCACTGTATGCTTCTTGGGGCCAACAGCACCTGATGTAAAAGATCGCTATGCTCCTCGAACACGGCCAGAAGATTTCACTGTCCCGCCCGAGTGGGTTCCTTTTCGTAATTCCAAATTGGCTTTTAAGCCTTTCGAATCCAAGAAAATTTTCGAGGCTACTGTACAAAACCCTTCTGGCTTTTCGGATTCGTTACGCTTGGAGTTCACGACCAAAGATTGTGAACTCTATTTAGTTCGAAGTTGCAAAGAGATCGAGGGTGAGTGGCTGGATTTGGCTCAGGATATTCTTCCAGCACCTTTAGTGCTTCCGGTGGGGTTGTTGCCACCAATAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGCTGGTCTATAATTGATGACTGGTTGAACAAGCAAGAGAAGGGGACTGCTGTCTATGTTGCGTTAGGAACTGAAGTGAATCCAAGTCAAGAAGACTTCACAGAATTGGCTCTGGGATTGGAACTTTCTGGGTTGCCTTTCTTTTGGGTATTGAGGAAATTACCAAGTGGTTCAGGGGATGGTAACTTGGAGATCAAGCTACCAGATGGCCTTGAAGATCGAACCGAGGGACGGGGGCTTGTTTGGAGAACTTGGGCACCTCAGCCCAAAATCTTGGCTCACAAGTCAATTGGCGGTTTCTTGACTCACTGCGGTTGGAGTTCACTCATAGAGGGACTCTATTATGGACATCCTCTTGTGATGTTTCCATTCTTATATGACCAAGGGCTAAATGCTAGGCTTTGGGACAAGAAGGTTGGAATTGAGGTACCAAGAGACGAACAGAGTGGATCGTTTACGAGGGATTCGGTGGCCAACTCACTGAAATTAGTTATGGTGGATAAGGATGGGAAGGCTTATAGGGATGGGGCTAAGGAATTTAGTGCAACATTCAGAGACAGAGAGCTTCAAGAAAGATACTTGGACACATGCTTAGACTATTTAGAAAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

471

Amino Acids

53.25

Weight (kDa)

5.42

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 280 - 456 5.2e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1228
AccB1I GGYRCC 2 cut(s) 1057, 1228
AciI CCGC 3 cut(s) 521, 1095, 1113
AclWI GGATC 2 cut(s) 11, 1258
AcoI YGGCCR 2 cut(s) 500, 1272
AcsI RAATTY 5 cut(s) 162, 190, 320, 582, 1337
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 2 cut(s) 600, 1230
AfiI CCNNNNNNNGG 2 cut(s) 372, 1032
AgsI TTSAA 4 cut(s) 305, 829, 1016, 1370
AjuI GAANNNNNNNTTGG 4 cut(s) 192, 224, 569, 601
AluBI AGCT 9 cut(s) 6, 101, 286, 308, 389, 397, 804, 1000, 1366
AluI AGCT 9 cut(s) 6, 101, 286, 308, 389, 397, 804, 1000, 1366
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 1230, 1350
AlwI GGATC 2 cut(s) 11, 1258
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 4 cut(s) 455, 500, 1009, 1272
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 5 cut(s) 162, 190, 320, 582, 1337
Asp700I GAANNNNTTC 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 1228
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 707
AsuII TTCGAA 2 cut(s) 570, 673
AsuNHI GCTAGC 2 cut(s) 52, 286
AvaI CYCGRG 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 1060
BalI TGGCCA 1 cut(s) 1274
BanI GGYRCC 2 cut(s) 1057, 1228
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 2 cut(s) 792, 900
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 1062
BbvI GCAGC 1 cut(s) 421
BccI CCATC 5 cut(s) 290, 974, 1001, 1301, 1319
BceAI ACGGC 1 cut(s) 515
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BcoDI GTCTC 2 cut(s) 1230, 1350
BfaI CTAG 6 cut(s) 53, 287, 326, 398, 1197, 1414
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 4 cut(s) 456, 534, 1059, 1230
BmtI GCTAGC 2 cut(s) 56, 290
BoxI GACNNNNGTC 1 cut(s) 851
BpiI GAAGAC 2 cut(s) 792, 900
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 3 cut(s) 714, 1062, 1332
Bpu14I TTCGAA 2 cut(s) 570, 673
BpuEI CTTGAG 2 cut(s) 101, 266
BsaJI CCNNGG 3 cut(s) 47, 1026, 1183
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 1032
Bse1I ACTGG 2 cut(s) 377, 827
BseDI CCNNGG 3 cut(s) 47, 1026, 1183
BseGI GGATG 6 cut(s) 144, 259, 985, 1150, 1312, 1330
BseLI CCNNNNNNNGG 2 cut(s) 372, 1032
BseMII CTCAG 2 cut(s) 728, 1076
BseNI ACTGG 2 cut(s) 377, 827
BseRI GAGGAG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 1060
BseXI GCAGC 1 cut(s) 421
BshFI GGCC 4 cut(s) 457, 502, 1011, 1274
BshNI GGYRCC 2 cut(s) 1057, 1228
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 1 cut(s) 746
BslFI GGGAC 6 cut(s) 242, 503, 859, 1044, 1149, 1220
BslI CCNNNNNNNGG 2 cut(s) 372, 1032
BsmAI GTCTC 2 cut(s) 1230, 1350
BsmBI CGTCTC 1 cut(s) 1230
BsmFI GGGAC 6 cut(s) 242, 503, 859, 1044, 1149, 1220
BsnI GGCC 4 cut(s) 457, 502, 1011, 1274
BsoBI CYCGRG 1 cut(s) 524
Bsp119I TTCGAA 2 cut(s) 570, 673
Bsp1286I GDGCHC 2 cut(s) 8, 1060
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 521, 1095, 1113
BspANI GGCC 4 cut(s) 457, 502, 1011, 1274
BspCNI CTCAG 2 cut(s) 727, 1075
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 4 cut(s) 456, 534, 1059, 1230
BspOI GCTAGC 2 cut(s) 56, 290
BspPI GGATC 2 cut(s) 11, 1258
BspT104I TTCGAA 2 cut(s) 570, 673
BspT107I GGYRCC 2 cut(s) 1057, 1228
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 2 cut(s) 377, 827
BssECI CCNNGG 3 cut(s) 47, 1026, 1183
BssMI GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
BssSI CACGAG 1 cut(s) 408
BssT1I CCWWGG 2 cut(s) 47, 1183
Bst2BI CACGAG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 442, 517, 598
Bst6I CTCTTC 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 598
BstBI TTCGAA 2 cut(s) 570, 673
BstC8I GCNNGC 3 cut(s) 54, 247, 288
BstDEI CTNAG 5 cut(s) 393, 714, 1062, 1332, 1393
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 6 cut(s) 144, 259, 985, 1150, 1312, 1330
BstKTI GATC 6 cut(s) 19, 481, 690, 996, 1021, 1253
BstMAI GTCTC 2 cut(s) 1230, 1350
BstMBI GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
BstNSI RCATGY 1 cut(s) 1392
BstPAI GACNNNNGTC 1 cut(s) 851
BstSLI GKGCMC 1 cut(s) 1060
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 2 cut(s) 792, 900
BstXI CCANNNNNNTGG 1 cut(s) 1075
BsuRI GGCC 4 cut(s) 457, 502, 1011, 1274
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 6 cut(s) 144, 259, 985, 1150, 1312, 1330
BtsI GCAGTG 1 cut(s) 1108
BtsIMutI CAGTG 6 cut(s) 12, 370, 438, 513, 1108, 1280
Cac8I GCNNGC 3 cut(s) 54, 247, 288
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 599, 1229
CviAII CATG 5 cut(s) 48, 250, 293, 356, 1389
CviQI GTAC 2 cut(s) 599, 1229
DdeI CTNAG 5 cut(s) 393, 714, 1062, 1332, 1393
DpnI GATC 6 cut(s) 18, 480, 689, 995, 1020, 1252
DpnII GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
EaeI YGGCCR 2 cut(s) 500, 1272
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 47, 1183
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 47, 1183
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 47, 1183
Esp3I CGTCTC 1 cut(s) 1230
FaeI CATG 5 cut(s) 51, 253, 296, 359, 1392
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 6 cut(s) 242, 503, 859, 1044, 1149, 1220
FatI CATG 5 cut(s) 47, 249, 292, 355, 1388
FauI CCCGC 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 6 cut(s) 131, 266, 992, 1137, 1319, 1337
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 6 cut(s) 53, 287, 326, 398, 1197, 1414
GluI GCNGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 4 cut(s) 457, 502, 1011, 1274
HapII CCGG 1 cut(s) 746
Hin1II CATG 5 cut(s) 51, 253, 296, 359, 1392
HinfI GANTC 7 cut(s) 329, 572, 623, 880, 1105, 1137, 1265
HpaII CCGG 1 cut(s) 746
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 4 cut(s) 642, 659, 1124, 1257
Hpy188I TCNGA 4 cut(s) 319, 622, 781, 1355
Hpy188III TCNNGA 9 cut(s) 80, 341, 356, 408, 643, 716, 890, 1102, 1370
Hpy8I GTNNAC 4 cut(s) 642, 659, 1124, 1257
HpyAV CCTTC 5 cut(s) 133, 618, 835, 1207, 1306
HpyCH4III ACNGT 3 cut(s) 442, 517, 598
HpyCH4V TGCA 4 cut(s) 89, 96, 681, 1346
HpyF3I CTNAG 5 cut(s) 393, 714, 1062, 1332, 1393
Hsp92II CATG 5 cut(s) 51, 253, 296, 359, 1392
KpnI GGTACC 1 cut(s) 1232
Kzo9I GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
LmnI GCTCC 2 cut(s) 11, 493
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 6 cut(s) 53, 287, 326, 398, 1197, 1414
MaeIII GTNAC 3 cut(s) 62, 627, 983
MalI GATC 6 cut(s) 18, 480, 689, 995, 1020, 1252
MboI GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
MboII GAAGA 6 cut(s) 117, 518, 716, 797, 905, 1028
MfeI CAATTG 1 cut(s) 1089
MhlI GDGCHC 2 cut(s) 8, 1060
MlsI TGGCCA 1 cut(s) 1274
MluNI TGGCCA 1 cut(s) 1274
MlyI GAGTC 2 cut(s) 1099, 1131
MmeI TCCRAC 4 cut(s) 172, 223, 1097, 1198
Mox20I TGGCCA 1 cut(s) 1274
MroXI GAANNNNTTC 1 cut(s) 584
MscI TGGCCA 1 cut(s) 1274
MseI TTAA 2 cut(s) 176, 561
Msp20I TGGCCA 1 cut(s) 1274
MspI CCGG 1 cut(s) 746
MunI CAATTG 1 cut(s) 1089
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
NheI GCTAGC 2 cut(s) 52, 286
NlaIII CATG 5 cut(s) 51, 253, 296, 359, 1392
NlaIV GGNNCC 4 cut(s) 456, 534, 1059, 1230
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 1392
NspV TTCGAA 2 cut(s) 570, 673
PagI TCATGA 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 5 cut(s) 329, 572, 623, 880, 1265
PkrI GCNGC 1 cut(s) 436
PleI GAGTC 2 cut(s) 1099, 1131
PpsI GAGTC 2 cut(s) 1099, 1131
PshAI GACNNNNGTC 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 4 cut(s) 456, 534, 1059, 1230
PspPI GGNCC 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 600, 1230
RsaNI GTAC 2 cut(s) 599, 1229
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 176, 561
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 6 cut(s) 16, 478, 687, 993, 1018, 1250
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 2 cut(s) 1099, 1131
SduI GDGCHC 2 cut(s) 8, 1060
SfuI TTCGAA 2 cut(s) 570, 673
SmlI CTYRAG 2 cut(s) 80, 281
SmoI CTYRAG 2 cut(s) 80, 281
SsiI CCGC 3 cut(s) 521, 1095, 1113
SspMI CTAG 6 cut(s) 53, 287, 326, 398, 1197, 1414
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 2 cut(s) 47, 1183
TaaI ACNGT 3 cut(s) 442, 517, 598
TaqI TCGA 8 cut(s) 103, 219, 493, 570, 588, 673, 690, 1021
TatI WGTACW 1 cut(s) 598
TfiI GAWTC 5 cut(s) 329, 572, 623, 880, 1265
Tru1I TTAA 2 cut(s) 176, 561
Tru9I TTAA 2 cut(s) 176, 561
TscAI CASTG 6 cut(s) 19, 377, 445, 520, 1115, 1287
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 115, 344, 798
TspRI CASTG 6 cut(s) 19, 377, 445, 520, 1115, 1287
XapI RAATTY 5 cut(s) 162, 190, 320, 582, 1337
XceI RCATGY 1 cut(s) 1392
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 6 cut(s) 53, 287, 326, 398, 1197, 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.