RLG00000017842

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000339
Physical Location & Seq
Forward (+)
22042009 .. 22043656
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017842

Sequence Viewer

Length: 1137 bp
ATGAGCTCTACCTCTGCAACTAAGCCTGAGAAGCTCCACATAGCTTTGTTCCCATGGCTTGCCTTCGGTCACATAATCCCATTTCTTGAAGTTGCCAAGCACATAGCTCGCAGAGGCCACAAGCTCCCCGAAAATGCAGAGGCCACCATGGACGTCCCATACGACGATATCCCATACCTCAAAATAGCTTATGATGGACTCGAACATGTTCCGCCACTGCACTCTCCCGATTGGATCATTTATGACTTTGCCCCATACTGGTTGCCTCCAATTGCTATCAAGCTCGGCATCAAACGAGCCATATTCTGTACCTTCAATGCGTCCACCTTATGTTTCATGGGATCAACGTCACCGGAGGTAGTGTCCCGCTATGCTCAGAGAACACGGTTGGAGCATTTCACTGTCCCTCCCGAATGGATTCGCTTCCCGTCCAAAGTCTTTTTTAGGCCTTTCGAGGCCAAGAGTTTGATAGATGGTAGTCTGATACAAAATGCCTCCGGCGTGACGGATTGGTCTCGTGCGGAATCAACTATCCAGGGTTGTCAAGTCTTCTTCATTCGAAGTTGTAGAGAGATCGAGGGAGAGTCGCTTGATTTACTTCCAGACCTTCACCAGAAACCTGTAGTACTTCCCACGGGATTGTTGCCACCATTGGTCCCAACAAGTGATGAAGACCAACCGGACAACAATTGGTCTAAAATTGCTGAGTGGTTGGACAAACAAAAGAAAGGGAAAGTAGTTTATGTTGCATTTGGGAGTGAGATTAATTTAAGCCAAGAAGAGTTCAATGAGTTGGCTCTTGGATTAGAGCTATGTGGGTTGCCTTTCTTTTGGGTGCTGAGGAAACCGAGTCATGGGTCCGGCGATGCTGATTCGGTTAGGCTACCAGATGGGTTTGAGGATCGAACCAAAGATCGTGGGCTTGTTTGGACCACTTGGGCTCCTCAGCCTAAAATTTTGGCCCACGAGTCTGTCGGGGGTTTCTTGACTCATTGCGGTTGGAGTTCCCTCATTGAGGCACTCCAATATGGGCGTCCACTAATCATGCTGCCAATAATGTATGATCAAGGACTAATTGCTAGGTTTTGGGACAAGAGGATCGGGATTGAGGTATCGAGAGACGAAGAGAGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

379

Amino Acids

42.74

Weight (kDa)

5.61

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 243 - 357 3.2e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AatII GACGTC 1 cut(s) 156
AciI CCGC 4 cut(s) 212, 367, 521, 996
AclWI GGATC 4 cut(s) 242, 349, 909, 1106
AcsI RAATTY 1 cut(s) 954
AcyI GRCGYC 2 cut(s) 153, 1033
AfaI GTAC 2 cut(s) 310, 627
AfiI CCNNNNNNNGG 3 cut(s) 258, 854, 1015
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 3 cut(s) 89, 316, 787
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 8 cut(s) 6, 34, 44, 107, 124, 188, 283, 811
AluI AGCT 8 cut(s) 6, 34, 44, 107, 124, 188, 283, 811
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 519, 1113
AlwI GGATC 4 cut(s) 242, 349, 909, 1106
AoxI GGCC 5 cut(s) 115, 141, 446, 456, 960
ApeKI GCWGC 1 cut(s) 1048
ApoI RAATTY 1 cut(s) 954
AseI ATTAAT 1 cut(s) 765
Asp700I GAANNNNTTC 2 cut(s) 207, 417
AspS9I GGNCC 4 cut(s) 655, 858, 930, 961
AsuHPI GGTGA 2 cut(s) 342, 602
AsuII TTCGAA 1 cut(s) 559
AvaII GGWCC 3 cut(s) 655, 858, 930
BanII GRGCYC 2 cut(s) 8, 943
BauI CACGAG 2 cut(s) 516, 965
BbsI GAAGAC 2 cut(s) 541, 678
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 2 cut(s) 839, 945
BbvI GCAGC 1 cut(s) 1035
BccI CCATC 3 cut(s) 188, 467, 884
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 1 cut(s) 536
BclI TGATCA 1 cut(s) 1063
BcoDI GTCTC 2 cut(s) 519, 1113
BfaI CTAG 1 cut(s) 1080
BfmI CTRYAG 1 cut(s) 621
BisI GCNGC 1 cut(s) 1049
BlsI GCNGC 1 cut(s) 1050
BmcAI AGTACT 1 cut(s) 627
Bme1390I CCNGG 1 cut(s) 536
Bme18I GGWCC 3 cut(s) 655, 858, 930
BmgT120I GGNCC 4 cut(s) 655, 858, 930, 961
BmiI GGNNCC 3 cut(s) 657, 859, 942
BmrFI CCNGG 1 cut(s) 536
BmsI GCATC 2 cut(s) 297, 856
BpiI GAAGAC 2 cut(s) 541, 678
Bpu10I CCTNAGC 2 cut(s) 839, 945
Bpu14I TTCGAA 1 cut(s) 559
BsaHI GRCGYC 2 cut(s) 153, 1033
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 4 cut(s) 53, 147, 535, 633
BsaWI WCCGGW 2 cut(s) 352, 679
BsaXI ACNNNNNCTCC 6 cut(s) 347, 377, 391, 421, 925, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 854, 1015
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 991
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 4 cut(s) 53, 147, 535, 633
BseLI CCNNNNNNNGG 3 cut(s) 258, 854, 1015
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 5 cut(s) 18, 389, 696, 830, 959
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 933
BseXI GCAGC 1 cut(s) 1035
BsgI GTGCAG 1 cut(s) 203
BshFI GGCC 5 cut(s) 117, 143, 448, 458, 962
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 4 cut(s) 353, 498, 680, 861
BslFI GGGAC 5 cut(s) 140, 349, 389, 641, 1103
BslI CCNNNNNNNGG 3 cut(s) 258, 854, 1015
BsmAI GTCTC 2 cut(s) 519, 1113
BsmBI CGTCTC 1 cut(s) 1113
BsmFI GGGAC 5 cut(s) 140, 349, 389, 641, 1103
BsnI GGCC 5 cut(s) 117, 143, 448, 458, 962
Bso31I GGTCTC 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 559
Bsp1286I GDGCHC 2 cut(s) 8, 943
Bsp143I GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
Bsp19I CCATGG 2 cut(s) 53, 147
BspACI CCGC 4 cut(s) 212, 367, 521, 996
BspANI GGCC 5 cut(s) 117, 143, 448, 458, 962
BspCNI CTCAG 5 cut(s) 19, 388, 697, 831, 958
BspLI GGNNCC 3 cut(s) 657, 859, 942
BspPI GGATC 4 cut(s) 242, 349, 909, 1106
BspT104I TTCGAA 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 991
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 53, 147, 535, 633
BssMI GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
BssNI GRCGYC 2 cut(s) 153, 1033
BssSI CACGAG 2 cut(s) 516, 965
BssT1I CCWWGG 2 cut(s) 53, 147
Bst2BI CACGAG 2 cut(s) 516, 965
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 387, 403
Bst6I CTCTTC 2 cut(s) 774, 1119
BstACI GRCGYC 2 cut(s) 153, 1033
BstBI TTCGAA 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 60, 109
BstDEI CTNAG 6 cut(s) 21, 27, 375, 705, 839, 945
BstDSI CCRYGG 3 cut(s) 53, 147, 633
BstENI CCTNNNNNAGG 1 cut(s) 1013
BstKTI GATC 7 cut(s) 237, 344, 576, 904, 916, 1066, 1101
BstMAI GTCTC 2 cut(s) 519, 1113
BstMBI GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 534
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 1035
BstV2I GAAGAC 2 cut(s) 541, 678
BsuRI GGCC 5 cut(s) 117, 143, 448, 458, 962
BtgI CCRYGG 3 cut(s) 53, 147, 633
BtgZI GCGATG 1 cut(s) 879
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 215, 399
Cac8I GCNNGC 2 cut(s) 60, 109
Cfr13I GGNCC 4 cut(s) 655, 858, 930, 961
CseI GACGC 2 cut(s) 309, 1022
Csp6I GTAC 2 cut(s) 309, 626
CspCI CAANNNNNGTGG 2 cut(s) 898, 933
CviAII CATG 6 cut(s) 54, 148, 206, 337, 854, 1045
CviQI GTAC 2 cut(s) 309, 626
DdeI CTNAG 6 cut(s) 21, 27, 375, 705, 839, 945
DpnI GATC 7 cut(s) 236, 343, 575, 903, 915, 1065, 1100
DpnII GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
Eam1104I CTCTTC 2 cut(s) 774, 1119
EarI CTCTTC 2 cut(s) 774, 1119
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 53, 147
Eco147I AGGCCT 1 cut(s) 448
Eco24I GRGCYC 2 cut(s) 8, 943
Eco31I GGTCTC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 3 cut(s) 655, 858, 930
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 1013
EcoRII CCWGG 1 cut(s) 534
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 53, 147
EcoT38I GRGCYC 2 cut(s) 8, 943
ErhI CCWWGG 2 cut(s) 53, 147
Esp3I CGTCTC 1 cut(s) 1113
FaeI CATG 6 cut(s) 57, 151, 209, 340, 857, 1048
FaqI GGGAC 5 cut(s) 140, 349, 389, 641, 1103
FatI CATG 6 cut(s) 53, 147, 205, 336, 853, 1044
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 1 cut(s) 1049
FriOI GRGCYC 2 cut(s) 8, 943
Fsp4HI GCNGC 1 cut(s) 1049
FspBI CTAG 1 cut(s) 1080
GluI GCNGC 1 cut(s) 1049
HaeIII GGCC 5 cut(s) 117, 143, 448, 458, 962
HapII CCGG 4 cut(s) 353, 498, 680, 861
HgaI GACGC 2 cut(s) 309, 1022
Hin1I GRCGYC 2 cut(s) 153, 1033
Hin1II CATG 6 cut(s) 57, 151, 209, 340, 857, 1048
HinfI GANTC 8 cut(s) 198, 418, 524, 584, 850, 872, 968, 988
HpaII CCGG 4 cut(s) 353, 498, 680, 861
HphI GGTGA 2 cut(s) 342, 602
Hpy166II GTNNAC 2 cut(s) 324, 1037
Hpy188I TCNGA 2 cut(s) 378, 483
Hpy188III TCNNGA 7 cut(s) 86, 227, 410, 602, 985, 1102, 1116
Hpy8I GTNNAC 2 cut(s) 324, 1037
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 73, 322, 617
HpyCH4III ACNGT 2 cut(s) 387, 403
HpyCH4IV ACGT 2 cut(s) 153, 347
HpyCH4V TGCA 4 cut(s) 17, 137, 220, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 6 cut(s) 21, 27, 375, 705, 839, 945
HpySE526I ACGT 2 cut(s) 153, 347
Hsp92I GRCGYC 2 cut(s) 153, 1033
Hsp92II CATG 6 cut(s) 57, 151, 209, 340, 857, 1048
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
LmnI GCTCC 4 cut(s) 39, 129, 391, 946
Lsp1109I GCAGC 1 cut(s) 1035
LweI GCATC 2 cut(s) 297, 856
MaeI CTAG 1 cut(s) 1080
MaeII ACGT 2 cut(s) 153, 347
MaeIII GTNAC 3 cut(s) 68, 348, 502
MalI GATC 7 cut(s) 236, 343, 575, 903, 915, 1065, 1100
MboI GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
MboII GAAGA 5 cut(s) 541, 544, 683, 791, 1136
MfeI CAATTG 2 cut(s) 270, 688
MhlI GDGCHC 2 cut(s) 8, 943
MluCI AATT 6 cut(s) 270, 688, 699, 766, 954, 1074
MlyI GAGTC 5 cut(s) 192, 593, 859, 977, 982
MmeI TCCRAC 3 cut(s) 369, 693, 980
MroXI GAANNNNTTC 2 cut(s) 207, 417
MseI TTAA 2 cut(s) 765, 770
MspI CCGG 4 cut(s) 353, 498, 680, 861
MspR9I CCNGG 1 cut(s) 536
MunI CAATTG 2 cut(s) 270, 688
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 1 cut(s) 31
NcoI CCATGG 2 cut(s) 53, 147
NdeII GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
NlaIII CATG 6 cut(s) 57, 151, 209, 340, 857, 1048
NlaIV GGNNCC 3 cut(s) 657, 859, 942
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 3 cut(s) 68, 348, 502
NspI RCATGY 1 cut(s) 209
NspV TTCGAA 1 cut(s) 559
PceI AGGCCT 1 cut(s) 448
PciI ACATGT 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 2 cut(s) 207, 417
PfeI GAWTC 3 cut(s) 418, 524, 872
PkrI GCNGC 1 cut(s) 1050
PleI GAGTC 5 cut(s) 192, 592, 858, 976, 982
PpsI GAGTC 5 cut(s) 192, 592, 858, 976, 982
PscI ACATGT 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 765
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 3 cut(s) 657, 859, 942
PspPI GGNCC 4 cut(s) 655, 858, 930, 961
RsaI GTAC 2 cut(s) 310, 627
RsaNI GTAC 2 cut(s) 309, 626
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 765, 770
SatI GCNGC 1 cut(s) 1049
Sau3AI GATC 7 cut(s) 234, 341, 573, 901, 913, 1063, 1098
Sau96I GGNCC 4 cut(s) 655, 858, 930, 961
ScaI AGTACT 1 cut(s) 627
SchI GAGTC 5 cut(s) 192, 593, 859, 977, 982
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 2 cut(s) 8, 943
SfaNI GCATC 2 cut(s) 297, 856
SfcI CTRYAG 1 cut(s) 621
SfuI TTCGAA 1 cut(s) 559
SinI GGWCC 3 cut(s) 655, 858, 930
Sse9I AATT 6 cut(s) 270, 688, 699, 766, 954, 1074
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 4 cut(s) 212, 367, 521, 996
SspMI CTAG 1 cut(s) 1080
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 534
StyI CCWWGG 2 cut(s) 53, 147
TaaI ACNGT 2 cut(s) 387, 403
TaiI ACGT 2 cut(s) 156, 350
TaqI TCGA 6 cut(s) 201, 453, 559, 576, 904, 1115
TaqII GACCGA 1 cut(s) 56
TasI AATT 6 cut(s) 270, 688, 699, 766, 954, 1074
TatI WGTACW 1 cut(s) 625
TfiI GAWTC 3 cut(s) 418, 524, 872
Tru1I TTAA 2 cut(s) 765, 770
Tru9I TTAA 2 cut(s) 765, 770
TscAI CASTG 2 cut(s) 222, 406
TseFI GTSAC 3 cut(s) 68, 348, 502
TseI GCWGC 1 cut(s) 1048
Tsp45I GTSAC 3 cut(s) 68, 348, 502
TspDTI ATGAA 3 cut(s) 325, 544, 684
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 222, 406
VpaK11BI GGWCC 3 cut(s) 655, 858, 930
VspI ATTAAT 1 cut(s) 765
XagI CCTNNNNNAGG 1 cut(s) 1013
XapI RAATTY 1 cut(s) 954
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 2 cut(s) 207, 417
XspI CTAG 1 cut(s) 1080
ZraI GACGTC 1 cut(s) 154
ZrmI AGTACT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.