RchiOBHm_Chr2g0111531

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000339
Physical Location & Seq
Reverse (-)
23180515 .. 23180796
282 bp
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UTR
Exon/CDS
Intron
PRQ48512

Sequence Viewer

Length: 282 bp
ATGATGCTTCCTTTCTTCATTGACCAAGGGCTAAATGCTAGGCTTTGGGGCAAGAAGGTTGGAATTGAGGTACCGAGAGATGAGCAGAGTGGATCGTTTATGAGGGATTCGGTGGCCAAGTCACTGAAATTGGTTATGGTGGAGGAGGATGGAAAGGCTTATAGGGATGGGGCTAAGGAATTTAGTGCAACATTCAGAGACAGAGAGCTTCAAGATAGATACATGGACACATTCTTGGACTATTTAGAAAAGCATAAGAAAGGGAACGAGTTTGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

93

Amino Acids

10.9

Weight (kDa)

5.41

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AclWI GGATC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 70
BccI CCATC 2 cut(s) 143, 161
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 2 cut(s) 154, 172
BseRI GAGGAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 92, 274
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 2 cut(s) 92, 274
BssT1I CCWWGG 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 154, 172
BstKTI GATC 2 cut(s) 95, 277
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 92, 274
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 154, 172
BtsIMutI CAGTG 1 cut(s) 122
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 223
CviJI RGCY 6 cut(s) 31, 43, 116, 158, 173, 208
CviKI_1 RGCY 6 cut(s) 31, 43, 116, 158, 173, 208
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 94, 276
DpnII GATC 2 cut(s) 92, 274
EaeI YGGCCR 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 226
FaiI YATR 5 cut(s) 101, 137, 162, 224, 255
FatI CATG 1 cut(s) 222
FbaI TGATCA 1 cut(s) 274
FokI GGATG 2 cut(s) 161, 179
FspBI CTAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 1 cut(s) 226
HinfI GANTC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 226
KpnI GGTACC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 92, 274
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 120
MalI GATC 2 cut(s) 94, 276
MboI GATC 2 cut(s) 92, 274
MboII GAAGA 1 cut(s) 7
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 63, 128, 179
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 4 cut(s) 61, 96, 136, 139
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 116
NdeII GATC 2 cut(s) 92, 274
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 72
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 92, 274
SetI ASST 3 cut(s) 60, 72, 210
SgeI CNNG 8 cut(s) 38, 51, 64, 87, 130, 224, 235, 247
Sse9I AATT 3 cut(s) 63, 128, 179
SspMI CTAG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 25
TasI AATT 3 cut(s) 63, 128, 179
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 129
XapI RAATTY 1 cut(s) 179
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.