Rmu_sc0003291.1_g000016

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003291.1
OG0000339
Physical Location & Seq
Forward (+)
75304 .. 77105
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003291.1_g000016.1.cds

Sequence Viewer

Length: 837 bp
atgagctctactactgagcctaagaagcttcacatagccttgttcccatggcagctggcatttggtcacataattccatttcttgagaacctcccagaaaatgcagaggctaccacagatatcccatcccgcatgataccatatctcaaaagagctcaagatgaactcgaagagggcatttctgaattcctacggactcaaattccggattggattatttacgatttcgcttcttactggctatcaccctcggcatctcgcgaagagatcgaaggggagtggctcgatttgcttcaagaccttcatccaaaacctatggtgcttccggtgggtctactgccaccacaaattcaacagacaaatgaagatcaagaaaatggaagcagctggtctataattgctgaatggttggataaacaagagaaggagaccgtagtttatgttgcgttcggaagtgaggttaaaagtcaagaagagtttactgaattggctcttggattagatctttctggtttgccaatcttttgggcattaaggaacctaccaccaagtgaggaaggagagtcgctaaaactaccggatgactttgagcagcgaactaaaggtcgtgggcttatttggacaacttgggctcctcagctcaaaatcttggcccacaagtcaattggcggtttcttgactcactgtggttggagttcagtcatggaaggttgggattgtgccaagagacgaagagacgaagagactggatcttttacgaggaacacggtggctgagtcactaagtttggttgtcaaggatgaagaggggaaggcttacagagatggtgccaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

278

Amino Acids

31.6

Weight (kDa)

4.64

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 827
AccI GTMKAC 1 cut(s) 334
AccII CGCG 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 2 cut(s) 130, 669
AclWI GGATC 1 cut(s) 757
AcsI RAATTY 3 cut(s) 185, 201, 348
AdeI CACNNNGTG 1 cut(s) 551
AgsI TTSAA 2 cut(s) 296, 353
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
AluBI AGCT 6 cut(s) 6, 28, 55, 155, 387, 640
AluI AGCT 6 cut(s) 6, 28, 55, 155, 387, 640
Alw21I GWGCWC 2 cut(s) 8, 157
Alw26I GTCTC 4 cut(s) 422, 721, 729, 737
AlwI GGATC 1 cut(s) 757
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 1 cut(s) 651
ApeKI GCWGC 3 cut(s) 52, 384, 592
ApoI RAATTY 3 cut(s) 185, 201, 348
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AspS9I GGNCC 1 cut(s) 652
AsuHPI GGTGA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 827
BanII GRGCYC 3 cut(s) 8, 157, 634
Bbv12I GWGCWC 2 cut(s) 8, 157
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 64, 396, 604
BccI CCATC 2 cut(s) 133, 818
BcoDI GTCTC 4 cut(s) 422, 721, 729, 737
BglII AGATCT 1 cut(s) 502
BisI GCNGC 3 cut(s) 53, 385, 593
BlsI GCNGC 3 cut(s) 54, 386, 594
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 3 cut(s) 539, 633, 829
BmsI GCATC 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 2 cut(s) 104, 141
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 47, 249
BsaWI WCCGGW 3 cut(s) 205, 325, 577
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bse1I ACTGG 2 cut(s) 242, 751
BseAI TCCGGA 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 47, 249
BseGI GGATG 4 cut(s) 125, 304, 586, 805
BseMII CTCAG 3 cut(s) 6, 650, 765
BseNI ACTGG 2 cut(s) 242, 751
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 3 cut(s) 64, 396, 604
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 653
BshNI GGYRCC 1 cut(s) 827
BsiHKAI GWGCWC 2 cut(s) 8, 157
BsiSI CCGG 3 cut(s) 206, 326, 578
BsmAI GTCTC 4 cut(s) 422, 721, 729, 737
BsmBI CGTCTC 2 cut(s) 721, 729
BsnI GGCC 1 cut(s) 653
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 3 cut(s) 8, 157, 634
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 4 cut(s) 267, 367, 502, 749
Bsp19I CCATGG 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 261
BspACI CCGC 2 cut(s) 130, 669
BspANI GGCC 1 cut(s) 653
BspCNI CTCAG 3 cut(s) 7, 649, 766
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 539, 633, 829
BspPI GGATC 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 422
BsrI ACTGG 2 cut(s) 242, 751
BssECI CCNNGG 2 cut(s) 47, 249
BssMI GATC 4 cut(s) 267, 367, 502, 749
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 433, 686, 769
Bst6I CTCTTC 6 cut(s) 165, 258, 468, 727, 735, 798
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 5 cut(s) 15, 21, 636, 774, 782
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 125, 304, 586, 805
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 4 cut(s) 270, 370, 505, 752
BstMAI GTCTC 4 cut(s) 422, 721, 729, 737
BstMBI GATC 4 cut(s) 267, 367, 502, 749
BstMWI GCNNNNNNNGC 2 cut(s) 25, 289
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 64, 396, 604
BstX2I RGATCY 2 cut(s) 502, 749
BstXI CCANNNNNNTGG 1 cut(s) 525
BstYI RGATCY 2 cut(s) 502, 749
BsuRI GGCC 1 cut(s) 653
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 4 cut(s) 125, 304, 586, 805
BtsIMutI CAGTG 1 cut(s) 682
BtuMI TCGCGA 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 652
CviAII CATG 3 cut(s) 48, 133, 703
DdeI CTNAG 5 cut(s) 15, 21, 636, 774, 782
DpnI GATC 4 cut(s) 269, 369, 504, 751
DpnII GATC 4 cut(s) 267, 367, 502, 749
DraIII CACNNNGTG 1 cut(s) 551
Eam1104I CTCTTC 6 cut(s) 165, 258, 468, 727, 735, 798
EarI CTCTTC 6 cut(s) 165, 258, 468, 727, 735, 798
Ecl136II GAGCTC 2 cut(s) 6, 155
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 3 cut(s) 8, 157, 634
Eco31I GGTCTC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 121
Eco53kI GAGCTC 2 cut(s) 6, 155
EcoICRI GAGCTC 2 cut(s) 6, 155
EcoRI GAATTC 1 cut(s) 185
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 3 cut(s) 8, 157, 634
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 2 cut(s) 721, 729
FaeI CATG 3 cut(s) 51, 136, 706
FaiI YATR 9 cut(s) 35, 49, 71, 134, 142, 317, 395, 441, 704
FatI CATG 3 cut(s) 47, 132, 702
FauI CCCGC 1 cut(s) 137
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 53, 385, 593
FokI GGATG 4 cut(s) 112, 291, 593, 812
FriOI GRGCYC 3 cut(s) 8, 157, 634
Fsp4HI GCNGC 3 cut(s) 53, 385, 593
GluI GCNGC 3 cut(s) 53, 385, 593
HaeIII GGCC 1 cut(s) 653
HapII CCGG 3 cut(s) 206, 326, 578
Hin1II CATG 3 cut(s) 51, 136, 706
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 4 cut(s) 196, 563, 679, 776
HpaII CCGG 3 cut(s) 206, 326, 578
HphI GGTGA 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 335, 480
Hpy188I TCNGA 2 cut(s) 184, 452
Hpy188III TCNNGA 8 cut(s) 83, 158, 206, 260, 296, 371, 470, 676
Hpy8I GTNNAC 2 cut(s) 335, 480
HpyAV CCTTC 6 cut(s) 266, 311, 418, 551, 701, 805
HpyCH4III ACNGT 3 cut(s) 433, 686, 769
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 289
HpyF3I CTNAG 5 cut(s) 15, 21, 636, 774, 782
Hsp92II CATG 3 cut(s) 51, 136, 706
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 267, 367, 502, 749
LmnI GCTCC 1 cut(s) 637
LpnPI CCDG 9 cut(s) 41, 108, 219, 223, 339, 373, 495, 591, 732
Lsp1109I GCAGC 3 cut(s) 64, 396, 604
LweI GCATC 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 65, 777
MalI GATC 4 cut(s) 269, 369, 504, 751
MboI GATC 4 cut(s) 267, 367, 502, 749
MboII GAAGA 7 cut(s) 182, 275, 377, 485, 744, 752, 815
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 2 cut(s) 502, 749
MhlI GDGCHC 3 cut(s) 8, 157, 634
MluCI AATT 8 cut(s) 72, 185, 201, 348, 396, 485, 663, 832
MlyI GAGTC 4 cut(s) 190, 572, 673, 785
MmeI TCCRAC 2 cut(s) 390, 671
MnlI CCTC 9 cut(s) 100, 101, 166, 259, 451, 547, 645, 753, 799
MroI TCCGGA 1 cut(s) 205
MseI TTAA 3 cut(s) 462, 533, 835
MspA1I CMGCKG 2 cut(s) 55, 387
MspI CCGG 3 cut(s) 206, 326, 578
MunI CAATTG 1 cut(s) 663
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 25, 289
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 267, 367, 502, 749
NlaIII CATG 3 cut(s) 51, 136, 706
NlaIV GGNNCC 3 cut(s) 539, 633, 829
NmeAIII GCCGAG 1 cut(s) 230
NmuCI GTSAC 2 cut(s) 65, 777
NruI TCGCGA 1 cut(s) 261
PkrI GCNGC 3 cut(s) 54, 386, 594
PleI GAGTC 4 cut(s) 190, 571, 673, 784
PpsI GAGTC 4 cut(s) 190, 571, 673, 784
Psp124BI GAGCTC 2 cut(s) 8, 157
PspN4I GGNNCC 3 cut(s) 539, 633, 829
PspPI GGNCC 1 cut(s) 652
PsuI RGATCY 2 cut(s) 502, 749
PvuII CAGCTG 2 cut(s) 55, 387
RruI TCGCGA 1 cut(s) 261
SacI GAGCTC 2 cut(s) 8, 157
SaqAI TTAA 3 cut(s) 462, 533, 835
SatI GCNGC 3 cut(s) 53, 385, 593
Sau3AI GATC 4 cut(s) 267, 367, 502, 749
Sau96I GGNCC 1 cut(s) 652
SchI GAGTC 4 cut(s) 190, 572, 673, 785
SduI GDGCHC 3 cut(s) 8, 157, 634
SfaNI GCATC 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 83, 156
SmoI CTYRAG 2 cut(s) 83, 156
Sse9I AATT 8 cut(s) 72, 185, 201, 348, 396, 485, 663, 832
SsiI CCGC 2 cut(s) 130, 669
SstI GAGCTC 2 cut(s) 8, 157
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 433, 686, 769
TaqI TCGA 3 cut(s) 168, 270, 285
TasI AATT 8 cut(s) 72, 185, 201, 348, 396, 485, 663, 832
Tru1I TTAA 3 cut(s) 462, 533, 835
Tru9I TTAA 3 cut(s) 462, 533, 835
TscAI CASTG 1 cut(s) 689
TseFI GTSAC 2 cut(s) 65, 777
TseI GCWGC 3 cut(s) 52, 384, 592
Tsp45I GTSAC 2 cut(s) 65, 777
TspDTI ATGAA 4 cut(s) 177, 293, 378, 816
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 689
XapI RAATTY 3 cut(s) 185, 201, 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.