MD01G1041000.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000339
Physical Location & Seq
Reverse (-)
13785020 .. 13785975
956 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1041000.v1.1.491

Sequence Viewer

Length: 843 bp
ATGGCTGGCATTAGGTCAGATATACCATTTCTTGAGGTTGCCAAGCACATAGCTCGGAGGGGTCACAAAGTTTCCTTCATATCCACCCCAAGAAACATCCAACGCCTCCCCAAAATCCCACCAGACTTAATTCCTTGGATCAACTTAGTCCAAATCCCGCTACGGTGCGTCGAAAGCCTCCCGGAGAATGCAGAGGCCACCACGGACGTGCCATACCTAAAATTAGCTCATGACGGACTTGACCAAGTGGTTGGACAACCAAGAGAAACAGAATGTAGTTTATACACTGCACTCGGAAGGGAGTTTAATTTAAGTCAACAAGACTTCACTGAGTCGGCTCTTGGACTAGAGCTATCCGGGTTGCCCCTTTTTTTTGGGGTCCTTGGGAGGCCCGGTTGGTCAAAAGTTGCTGATTCCGTCAAGCTGCCGGAGGAGTTCGAGGACCGGGTCAAGGGTCGTGGGATTGTTTGGACAACTTGGGCAGCTCAACACAAAATCTTGGCTCACAAGGCAACCGGGGGATTCCTGACACACTGCGGTTGGAGTTCGCTCATAGAAGGACTACACTATGGTCGACCTCTTATCATGTTGCCCTTCTTATATGACCAAGGGTTAAACGCCAGGTTTTGGGACAAGAAGATTGGAATTGAGGTGCCAAGAAACGAAGACGATGGATCGTTTACGAAGAACTGGGTGGCTAAGTCACTGAATTTGGTTGTGGTGGATGAGGAAGGGAAGGCTTACAGGGATGGAGCCAAAGAATACAGTGCATTATTTGGAGATAAGGACCTCCATGATAGATACATGGACAAATGCGTGGAGCATTTGGAAAAGCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

281

Amino Acids

31.57

Weight (kDa)

6.21

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 158 - 263 7.7e-12 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 652
AccB7I CCANNNNNTGG 1 cut(s) 627
AccI GTMKAC 1 cut(s) 574
AciI CCGC 2 cut(s) 158, 537
AclWI GGATC 2 cut(s) 146, 682
AcsI RAATTY 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 451, 627
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 620
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 5 cut(s) 53, 227, 352, 424, 485
AluI AGCT 5 cut(s) 53, 227, 352, 424, 485
AlwI GGATC 2 cut(s) 146, 682
AoxI GGCC 2 cut(s) 195, 389
ApeKI GCWGC 2 cut(s) 424, 482
ApoI RAATTY 1 cut(s) 709
AspS9I GGNCC 4 cut(s) 379, 390, 442, 787
AsuC2I CCSGG 5 cut(s) 182, 358, 393, 446, 517
AvaII GGWCC 3 cut(s) 379, 442, 787
BanI GGYRCC 1 cut(s) 652
BbsI GAAGAC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 411, 494
BccI CCATC 2 cut(s) 665, 743
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 622
BcnI CCSGG 5 cut(s) 182, 358, 393, 446, 517
BfaI CTAG 1 cut(s) 347
BisI GCNGC 2 cut(s) 425, 483
BlsI GCNGC 2 cut(s) 426, 484
Bme1390I CCNGG 6 cut(s) 182, 358, 393, 446, 517, 622
Bme18I GGWCC 3 cut(s) 379, 442, 787
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 4 cut(s) 379, 390, 442, 787
BmiI GGNNCC 3 cut(s) 380, 654, 754
BmrFI CCNGG 6 cut(s) 182, 358, 393, 446, 517, 622
BmrI ACTGGG 1 cut(s) 700
BmuI ACTGGG 1 cut(s) 700
BpiI GAAGAC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 5 cut(s) 182, 358, 393, 446, 517
BsaJI CCNNGG 5 cut(s) 134, 201, 382, 516, 607
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 627
Bse1I ACTGG 1 cut(s) 695
BseBI CCWGG 1 cut(s) 622
BseDI CCNNGG 5 cut(s) 134, 201, 382, 516, 607
BseGI GGATG 3 cut(s) 96, 730, 754
BseLI CCNNNNNNNGG 2 cut(s) 451, 627
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 411, 494
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 197, 391
BshNI GGYRCC 1 cut(s) 652
BsiSI CCGG 6 cut(s) 182, 357, 393, 428, 445, 516
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 451, 627
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 2 cut(s) 197, 391
Bsp143I GATC 2 cut(s) 138, 674
BspACI CCGC 2 cut(s) 158, 537
BspANI GGCC 2 cut(s) 197, 391
BspCNI CTCAG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 380, 654, 754
BspPI GGATC 2 cut(s) 146, 682
BspT107I GGYRCC 1 cut(s) 652
BsrI ACTGG 1 cut(s) 695
BssECI CCNNGG 5 cut(s) 134, 201, 382, 516, 607
BssMI GATC 2 cut(s) 138, 674
BssT1I CCWWGG 3 cut(s) 134, 382, 607
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 2 cut(s) 165, 767
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 145, 330, 699
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 3 cut(s) 96, 730, 754
BstKTI GATC 2 cut(s) 141, 677
BstMBI GATC 2 cut(s) 138, 674
BstMWI GCNNNNNNNGC 2 cut(s) 174, 509
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 6 cut(s) 180, 356, 391, 444, 515, 620
BstV1I GCAGC 2 cut(s) 411, 494
BstV2I GAAGAC 1 cut(s) 672
BstXI CCANNNNNNTGG 1 cut(s) 251
BsuRI GGCC 2 cut(s) 197, 391
BtgI CCRYGG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 3 cut(s) 96, 730, 754
BtsI GCAGTG 2 cut(s) 285, 532
BtsIMutI CAGTG 5 cut(s) 285, 327, 532, 704, 772
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 4 cut(s) 379, 390, 442, 787
CseI GACGC 1 cut(s) 157
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 5 cut(s) 230, 586, 794, 805, 840
DdeI CTNAG 3 cut(s) 145, 330, 699
DpnI GATC 2 cut(s) 140, 676
DpnII GATC 2 cut(s) 138, 674
Eco130I CCWWGG 3 cut(s) 134, 382, 607
Eco47I GGWCC 3 cut(s) 379, 442, 787
EcoO109I RGGNCCY 2 cut(s) 379, 787
EcoRII CCWGG 1 cut(s) 620
EcoT14I CCWWGG 3 cut(s) 134, 382, 607
ErhI CCWWGG 3 cut(s) 134, 382, 607
FaeI CATG 5 cut(s) 233, 589, 797, 808, 843
FaqI GGGAC 1 cut(s) 644
FatI CATG 5 cut(s) 229, 585, 793, 804, 839
FauI CCCGC 1 cut(s) 165
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 425, 483
FokI GGATG 3 cut(s) 83, 737, 761
Fsp4HI GCNGC 2 cut(s) 425, 483
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 425, 483
HaeIII GGCC 2 cut(s) 197, 391
HapII CCGG 6 cut(s) 182, 357, 393, 428, 445, 516
HgaI GACGC 1 cut(s) 157
Hin1II CATG 5 cut(s) 233, 589, 797, 808, 843
HincII GTYRAC 2 cut(s) 317, 575
HindII GTYRAC 2 cut(s) 317, 575
HinfI GANTC 3 cut(s) 332, 413, 522
HpaII CCGG 6 cut(s) 182, 357, 393, 428, 445, 516
Hpy166II GTNNAC 3 cut(s) 317, 575, 681
Hpy188I TCNGA 3 cut(s) 19, 57, 296
Hpy188III TCNNGA 3 cut(s) 32, 230, 526
Hpy8I GTNNAC 3 cut(s) 317, 575, 681
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 6 cut(s) 85, 291, 551, 604, 725, 730
HpyCH4III ACNGT 2 cut(s) 165, 767
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 191, 290, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 509
HpyF3I CTNAG 3 cut(s) 145, 330, 699
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 5 cut(s) 233, 589, 797, 808, 843
Kzo9I GATC 2 cut(s) 138, 674
LmnI GCTCC 2 cut(s) 752, 820
Lsp1109I GCAGC 2 cut(s) 411, 494
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 62, 702
MalI GATC 2 cut(s) 140, 676
MboI GATC 2 cut(s) 138, 674
MboII GAAGA 3 cut(s) 649, 677, 697
MluCI AATT 5 cut(s) 129, 221, 307, 645, 709
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 3 cut(s) 124, 232, 521
MseI TTAA 4 cut(s) 128, 306, 311, 614
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 6 cut(s) 182, 357, 393, 428, 445, 516
MspR9I CCNGG 6 cut(s) 182, 358, 393, 446, 517, 622
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 622
MwoI GCNNNNNNNGC 2 cut(s) 174, 509
NciI CCSGG 5 cut(s) 182, 358, 393, 446, 517
NdeII GATC 2 cut(s) 138, 674
NlaIII CATG 5 cut(s) 233, 589, 797, 808, 843
NlaIV GGNNCC 3 cut(s) 380, 654, 754
NmuCI GTSAC 2 cut(s) 62, 702
OliI CACNNNNGTG 1 cut(s) 206
PagI TCATGA 1 cut(s) 229
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 413, 522
PflFI GACNNNGTC 1 cut(s) 446
PflMI CCANNNNNTGG 1 cut(s) 627
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 2 cut(s) 426, 484
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PpuMI RGGWCCY 2 cut(s) 379, 787
Psp5II RGGWCCY 2 cut(s) 379, 787
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 3 cut(s) 380, 654, 754
PspPI GGNCC 4 cut(s) 379, 390, 442, 787
PspPPI RGGWCCY 2 cut(s) 379, 787
PsyI GACNNNGTC 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 206
SalI GTCGAC 1 cut(s) 573
SaqAI TTAA 4 cut(s) 128, 306, 311, 614
SatI GCNGC 2 cut(s) 425, 483
Sau3AI GATC 2 cut(s) 138, 674
Sau96I GGNCC 4 cut(s) 379, 390, 442, 787
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 6 cut(s) 182, 358, 393, 446, 517, 622
SinI GGWCC 3 cut(s) 379, 442, 787
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 5 cut(s) 129, 221, 307, 645, 709
SsiI CCGC 2 cut(s) 158, 537
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 6 cut(s) 180, 356, 391, 444, 515, 620
StyI CCWWGG 3 cut(s) 134, 382, 607
TaaI ACNGT 2 cut(s) 165, 767
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 171, 438, 574
TasI AATT 5 cut(s) 129, 221, 307, 645, 709
TfiI GAWTC 2 cut(s) 413, 522
Tru1I TTAA 4 cut(s) 128, 306, 311, 614
Tru9I TTAA 4 cut(s) 128, 306, 311, 614
TscAI CASTG 5 cut(s) 292, 334, 539, 711, 772
TseFI GTSAC 2 cut(s) 62, 702
TseI GCWGC 2 cut(s) 424, 482
Tsp45I GTSAC 2 cut(s) 62, 702
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 3 cut(s) 218, 249, 406
TspRI CASTG 5 cut(s) 292, 334, 539, 711, 772
Tth111I GACNNNGTC 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 627
VpaK11BI GGWCC 3 cut(s) 379, 442, 787
XapI RAATTY 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.