Rorug02G0169600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000339
Physical Location & Seq
Forward (+)
15220470 .. 15222750
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0169600.1

Sequence Viewer

Length: 759 bp
ATGGTCAGGTGGTGGCGCTCAGCCGGCGGAGGCCTCCGGTCGCTTCTCTCAAACCCTCCTCCCTCCGCCTCACACCCCTCTCTCCAATCCCAAGCTTCTCTCTACCACACCATCCAAGCCATCCCCAGAGAGTTCACCGGAAACCGAATCTCAGCCAAAGACAGAGCCCAGGGTCGAATCCCCGCCGTCGTCTTCGCTCAGCCTCCACCGGAAAACAGCCCCAAGCCCACTGGCCGGTCCATCGCCAGAAAACACTTGCTGACCACCGAGTGGAAGCAGATTCAGGCCATTCTCAAGTCCATTGAGCTCCCGTATTTCTGCTCCACCACATTTCCGCTCCAGATCCGAGCCGGGTCCGGGTCGTCGGTTCTGCTTGAATCCGGAAACGTCCTACCTGTCAAGATTCATAGGGACGAAGAGAGTGGGAAGATACTGAATTTGGTGTTTGTTTGGGCCGATGAGGGCTCCGAGTTGAAGGTGGATGTTCCGGTTACTTTTAAAGGTGAAGATGTTTGCCCAGGTCTCAAAAAAGGGGGCCACCTGAACAAAATTAGAACAAGTCTAAAGTACCTTTGCCCAGCCGAACATATTCCTCCCAAAATTGAGGTGGATATCAGCAATCTAGATATAGGAGATAGGGTGTGCCTTCCAGATGTTAAGGTTCATCCATCCCTGAAGCTTCTAAGCAAGAACGATGTCATGCCTATATGTAAGATAGTTGCAACTAAGTTGGAAACCCCAGAACCGGCAGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

252

Amino Acids

27.58

Weight (kDa)

9.3

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_TL5_C PF14693 158 - 242 3.7e-22 Ribosomal protein TL5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 270
AccBSI CCGCTC 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 380
AciI CCGC 4 cut(s) 27, 66, 183, 335
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 695
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 4 cut(s) 234, 270, 357, 745
AgsI TTSAA 2 cut(s) 377, 475
AjnI CCWGG 2 cut(s) 168, 517
AluBI AGCT 3 cut(s) 95, 307, 679
AluI AGCT 3 cut(s) 95, 307, 679
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 1 cut(s) 337
Aor13HI TCCGGA 1 cut(s) 380
AoxI GGCC 5 cut(s) 31, 232, 285, 453, 535
ApoI RAATTY 1 cut(s) 436
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 4 cut(s) 237, 354, 453, 535
AsuC2I CCSGG 2 cut(s) 352, 358
AsuHPI GGTGA 2 cut(s) 127, 515
AvaII GGWCC 2 cut(s) 237, 354
BanII GRGCYC 3 cut(s) 169, 309, 467
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 309
BccI CCATC 4 cut(s) 119, 128, 248, 676
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 170, 519
BcnI CCSGG 2 cut(s) 352, 358
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 1 cut(s) 623
BfoI RGCGCY 1 cut(s) 19
BlpI GCTNAGC 2 cut(s) 19, 198
Bme1390I CCNGG 4 cut(s) 170, 352, 358, 519
Bme18I GGWCC 2 cut(s) 237, 354
BmgT120I GGNCC 4 cut(s) 237, 354, 453, 535
BmiI GGNNCC 3 cut(s) 355, 466, 536
BmrFI CCNGG 4 cut(s) 170, 352, 358, 519
BpiI GAAGAC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 323
Bpu1102I GCTNAGC 2 cut(s) 19, 198
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 2 cut(s) 352, 358
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 168, 169, 517
BsaWI WCCGGW 5 cut(s) 36, 137, 208, 380, 487
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 270, 357, 745
Bse118I RCCGGY 3 cut(s) 23, 234, 745
Bse1I ACTGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 380
BseBI CCWGG 2 cut(s) 170, 519
BseDI CCNNGG 3 cut(s) 168, 169, 517
BseGI GGATG 5 cut(s) 111, 120, 487, 664, 668
BseLI CCNNNNNNNGG 4 cut(s) 234, 270, 357, 745
BseMII CTCAG 3 cut(s) 33, 165, 212
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 5 cut(s) 33, 234, 287, 455, 537
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 309
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 4 cut(s) 234, 270, 357, 745
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 5 cut(s) 33, 234, 287, 455, 537
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 169, 309, 467
Bsp13I TCCGGA 1 cut(s) 380
Bsp143I GATC 1 cut(s) 342
Bsp1720I GCTNAGC 2 cut(s) 19, 198
BspACI CCGC 4 cut(s) 27, 66, 183, 335
BspANI GGCC 5 cut(s) 33, 234, 287, 455, 537
BspCNI CTCAG 3 cut(s) 32, 164, 211
BspEI TCCGGA 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 355, 466, 536
BspPI GGATC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 337
BsrFI RCCGGY 3 cut(s) 23, 234, 745
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 3 cut(s) 23, 234, 745
BssECI CCNNGG 3 cut(s) 168, 169, 517
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 170, 519
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 5 cut(s) 19, 151, 198, 683, 726
BstF5I GGATG 5 cut(s) 111, 120, 487, 664, 668
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 1 cut(s) 342
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 170, 519
BstSCI CCNGG 4 cut(s) 168, 350, 356, 517
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BsuRI GGCC 5 cut(s) 33, 234, 287, 455, 537
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 5 cut(s) 111, 120, 487, 664, 668
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 25
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 3 cut(s) 23, 234, 745
Cfr13I GGNCC 4 cut(s) 237, 354, 453, 535
Csp6I GTAC 1 cut(s) 568
CviAII CATG 1 cut(s) 700
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 5 cut(s) 19, 151, 198, 683, 726
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
DraI TTTAAA 1 cut(s) 499
DraIII CACNNNGTG 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 2 cut(s) 42, 55
Ecl136II GAGCTC 1 cut(s) 307
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 3 cut(s) 169, 309, 467
Eco31I GGTCTC 1 cut(s) 527
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 2 cut(s) 237, 354
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 168, 517
EcoRV GATATC 1 cut(s) 613
EcoT38I GRGCYC 3 cut(s) 169, 309, 467
FaeI CATG 1 cut(s) 703
FaiI YATR 6 cut(s) 408, 588, 629, 701, 707, 709
FaqI GGGAC 1 cut(s) 425
FatI CATG 1 cut(s) 699
FauI CCCGC 1 cut(s) 190
FokI GGATG 5 cut(s) 98, 107, 494, 651, 655
FriOI GRGCYC 3 cut(s) 169, 309, 467
FspBI CTAG 1 cut(s) 623
GlaI GCGC 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 581
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 5 cut(s) 33, 234, 287, 455, 537
HhaI GCGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 703
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 93, 677
HinfI GANTC 5 cut(s) 147, 177, 280, 377, 403
HphI GGTGA 2 cut(s) 127, 515
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 347, 469
Hpy188III TCNNGA 5 cut(s) 340, 381, 400, 623, 650
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 2 cut(s) 191, 367
HpyAV CCTTC 2 cut(s) 469, 656
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 5 cut(s) 19, 151, 198, 683, 726
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 1 cut(s) 703
HspAI GCGC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 380
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 4 cut(s) 312, 326, 342, 470
MaeI CTAG 1 cut(s) 623
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 490
MalI GATC 1 cut(s) 344
MbiI CCGCTC 1 cut(s) 337
MboI GATC 1 cut(s) 342
MboII GAAGA 4 cut(s) 184, 428, 439, 518
MflI RGATCY 1 cut(s) 342
MhlI GDGCHC 3 cut(s) 169, 309, 467
MluCI AATT 3 cut(s) 436, 549, 600
MmeI TCCRAC 1 cut(s) 711
MroI TCCGGA 1 cut(s) 380
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 2 cut(s) 498, 657
MspR9I CCNGG 4 cut(s) 170, 352, 358, 519
MvaI CCWGG 2 cut(s) 170, 519
MwoI GCNNNNNNNGC 1 cut(s) 24
NaeI GCCGGC 1 cut(s) 25
NciI CCSGG 2 cut(s) 352, 358
NdeII GATC 1 cut(s) 342
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 703
NlaIV GGNNCC 3 cut(s) 355, 466, 536
PasI CCCWGGG 1 cut(s) 169
PceI AGGCCT 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 5 cut(s) 147, 177, 280, 377, 403
PflMI CCANNNNNTGG 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 168, 517
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 2 cut(s) 168, 517
PspN4I GGNNCC 3 cut(s) 355, 466, 536
PspPI GGNCC 4 cut(s) 237, 354, 453, 535
PsuI RGATCY 1 cut(s) 342
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 498, 657
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 4 cut(s) 237, 354, 453, 535
ScrFI CCNGG 4 cut(s) 170, 352, 358, 519
SduI GDGCHC 3 cut(s) 169, 309, 467
SinI GGWCC 2 cut(s) 237, 354
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 3 cut(s) 436, 549, 600
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 4 cut(s) 27, 66, 183, 335
SspMI CTAG 1 cut(s) 623
SstI GAGCTC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 4 cut(s) 168, 350, 356, 517
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 175
TasI AATT 3 cut(s) 436, 549, 600
TfiI GAWTC 5 cut(s) 147, 177, 280, 377, 403
Tru1I TTAA 2 cut(s) 498, 657
Tru9I TTAA 2 cut(s) 498, 657
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 395, 653
TspRI CASTG 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 237, 354
XapI RAATTY 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.