Rw2G017580

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000339
Physical Location & Seq
Reverse (-)
21773842 .. 21774855
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017580.1

Sequence Viewer

Length: 1014 bp
ATGGATGTCCCATACCACATTATTCCATACCTCAAATTAGCTCACGATGGACTTGAAGCCGGTATTTATGAATTTCTAGAAGCTCATACTCCGGATTGGATTATTCATGATTTTTCCCCTCATTGGTTGCCACCAATAGCTACAAAGCTAGGCATATCACGAGCCTATTTCAGCATCCTCAATGCTTGCCTTTGCAAAGAGATCGAGGGTGAGTGGTTGGATTTAGCTCAGGATATAATTCATCCAACACCTTTAGTGCTTCCAGTGGGGTTACTGCCACCGATAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGTTGGACTTTAATTGTCGACTGGTTGAACAAGCAAGAGAAGGGGACTGTTGTTTATGTTGCGTTAGGAACTAAAGTGAATCCAAGCCGAGAAGACTTCACAGAATTGTCTCTGGGATTGGAACTTTCTGGGTTGCCTTTCTTTTGGGTACTGAGGAAATTACCAAGTGGTTCAGGGGATGGTAACTTGGAGATCAAGTTACTAGACGGGTTTGAGCATCGAACCGAGGGCCGGGGGCTTGTTTGGAGAACTTGGGCACCTCGGCCCAAAATCTTGGCTCACAAGTCTATTGGCGGTTTCTTGACTCATTGCGGTTGGAGTTCAATCATAGAGGGACTCCATTATGGACGTCCTCTTATGATGCTTCCTTTCTTAATTGACCAAGGGCTAAATGCTAGGCTTTGGGACAAGAAGGTTGGAATTGAGGTACCGAGAGATGAGCAGAGTGGATCGTTTATGAGGGATTCGGTGGCCAAGTCACTGAAATTGGTTATGGTGGAGGAGGATGGAAAGGCTTATAGGGATGGGGCTAAGGAATTTAGTGCAACATTCAGAGACAGAGAGCTTCAAGATAGATACATGGACACATTCTTGGACTATTTAGAAAAGCATAAGAAAGGGAACGAGTTTGATCAATGTTGGTGCCAATTTCGGCATCAACGAGTCAACGGAGGTTCCGTTGAAATCCAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

337

Amino Acids

38.51

Weight (kDa)

5.5

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 114 - 297 4.3e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 670
Acc65I GGTACC 1 cut(s) 745
AccB1I GGYRCC 3 cut(s) 574, 745, 960
AccI GTMKAC 1 cut(s) 336
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 2 cut(s) 612, 630
AclWI GGATC 1 cut(s) 775
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 2 cut(s) 71, 854
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 2 cut(s) 468, 747
AfiI CCNNNNNNNGG 2 cut(s) 123, 549
AgsI TTSAA 5 cut(s) 56, 346, 642, 887, 1001
AluBI AGCT 6 cut(s) 41, 83, 140, 148, 227, 883
AluI AGCT 6 cut(s) 41, 83, 140, 148, 227, 883
Alw26I GTCTC 2 cut(s) 432, 867
AlwI GGATC 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 3 cut(s) 547, 581, 789
ApoI RAATTY 2 cut(s) 71, 854
Asp718I GGTACC 1 cut(s) 745
AspS9I GGNCC 2 cut(s) 547, 582
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 791
BanI GGYRCC 3 cut(s) 574, 745, 960
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 309, 417
BccI CCATC 4 cut(s) 41, 491, 818, 836
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BclI TGATCA 1 cut(s) 949
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 432, 867
BfaI CTAG 4 cut(s) 77, 149, 521, 714
Bme1390I CCNGG 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 547, 582
BmiI GGNNCC 4 cut(s) 576, 747, 962, 994
BmrFI CCNGG 1 cut(s) 551
BmsI GCATC 4 cut(s) 183, 544, 669, 982
BpiI GAAGAC 2 cut(s) 309, 417
Bpu10I CCTNAGC 2 cut(s) 228, 849
BpuMI CCSGG 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 667
BsaJI CCNNGG 4 cut(s) 543, 550, 578, 700
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 500, 530, 981, 1011
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 549
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 263, 344
Bse3DI GCAATG 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 91
BseDI CCNNGG 4 cut(s) 543, 550, 578, 700
BseGI GGATG 6 cut(s) 10, 174, 241, 502, 829, 847
BseLI CCNNNNNNNGG 2 cut(s) 123, 549
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 2 cut(s) 242, 461
BseNI ACTGG 2 cut(s) 263, 344
BseRI GAGGAG 1 cut(s) 833
BseSI GKGCMC 1 cut(s) 577
BshFI GGCC 3 cut(s) 549, 583, 791
BshNI GGYRCC 3 cut(s) 574, 745, 960
BsiSI CCGG 3 cut(s) 60, 92, 550
BslFI GGGAC 3 cut(s) 376, 666, 737
BslI CCNNNNNNNGG 2 cut(s) 123, 549
BsmAI GTCTC 2 cut(s) 432, 867
BsmFI GGGAC 3 cut(s) 376, 666, 737
BsnI GGCC 3 cut(s) 549, 583, 791
Bsp1286I GDGCHC 1 cut(s) 577
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 4 cut(s) 201, 510, 767, 949
BspACI CCGC 2 cut(s) 612, 630
BspANI GGCC 3 cut(s) 549, 583, 791
BspCNI CTCAG 2 cut(s) 241, 462
BspEI TCCGGA 1 cut(s) 91
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 4 cut(s) 576, 747, 962, 994
BspPI GGATC 1 cut(s) 775
BspT107I GGYRCC 3 cut(s) 574, 745, 960
BsrDI GCAATG 1 cut(s) 625
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 263, 344
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 543, 550, 578, 700
BssMI GATC 4 cut(s) 201, 510, 767, 949
BssNI GRCGYC 1 cut(s) 667
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 700
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 367
BstACI GRCGYC 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 228, 470, 849
BstF5I GGATG 6 cut(s) 10, 174, 241, 502, 829, 847
BstKTI GATC 4 cut(s) 204, 513, 770, 952
BstMAI GTCTC 2 cut(s) 432, 867
BstMBI GATC 4 cut(s) 201, 510, 767, 949
BstSCI CCNGG 1 cut(s) 549
BstSLI GKGCMC 1 cut(s) 577
BstV2I GAAGAC 2 cut(s) 309, 417
BstXI CCANNNNNNTGG 1 cut(s) 592
BsuRI GGCC 3 cut(s) 549, 583, 791
BtsCI GGATG 6 cut(s) 10, 174, 241, 502, 829, 847
BtsIMutI CAGTG 2 cut(s) 270, 797
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 547, 582
Csp6I GTAC 2 cut(s) 467, 746
CviAII CATG 2 cut(s) 107, 898
CviQI GTAC 2 cut(s) 467, 746
DdeI CTNAG 3 cut(s) 228, 470, 849
DpnI GATC 4 cut(s) 203, 512, 769, 951
DpnII GATC 4 cut(s) 201, 510, 767, 949
EaeI YGGCCR 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 2 cut(s) 110, 901
FaqI GGGAC 3 cut(s) 376, 666, 737
FatI CATG 2 cut(s) 106, 897
FbaI TGATCA 1 cut(s) 949
FblI GTMKAC 1 cut(s) 336
FokI GGATG 6 cut(s) 17, 161, 228, 509, 836, 854
FspBI CTAG 4 cut(s) 77, 149, 521, 714
HaeIII GGCC 3 cut(s) 549, 583, 791
HapII CCGG 3 cut(s) 60, 92, 550
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 2 cut(s) 110, 901
HincII GTYRAC 2 cut(s) 337, 985
HindII GTYRAC 2 cut(s) 337, 985
HinfI GANTC 5 cut(s) 397, 622, 654, 782, 981
HpaII CCGG 3 cut(s) 60, 92, 550
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 337, 985
Hpy188I TCNGA 2 cut(s) 298, 872
Hpy188III TCNNGA 8 cut(s) 44, 77, 92, 107, 159, 230, 619, 887
Hpy8I GTNNAC 2 cut(s) 337, 985
HpyAV CCTTC 2 cut(s) 352, 724
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 2 cut(s) 195, 863
HpyF3I CTNAG 3 cut(s) 228, 470, 849
HpySE526I ACGT 1 cut(s) 667
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 2 cut(s) 110, 901
Kpn2I TCCGGA 1 cut(s) 91
KpnI GGTACC 1 cut(s) 749
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 4 cut(s) 201, 510, 767, 949
LpnPI CCDG 9 cut(s) 73, 105, 215, 276, 325, 416, 432, 477, 563
LweI GCATC 4 cut(s) 183, 544, 669, 982
MaeI CTAG 4 cut(s) 77, 149, 521, 714
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 4 cut(s) 270, 500, 516, 795
MalI GATC 4 cut(s) 203, 512, 769, 951
MboI GATC 4 cut(s) 201, 510, 767, 949
MboII GAAGA 2 cut(s) 314, 422
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 791
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 3 cut(s) 616, 648, 990
MmeI TCCRAC 5 cut(s) 198, 269, 302, 614, 715
Mox20I TGGCCA 1 cut(s) 791
MroI TCCGGA 1 cut(s) 91
MscI TGGCCA 1 cut(s) 791
MseI TTAA 2 cut(s) 329, 692
Msp20I TGGCCA 1 cut(s) 791
MspI CCGG 3 cut(s) 60, 92, 550
MspR9I CCNGG 1 cut(s) 551
NciI CCSGG 1 cut(s) 551
NdeII GATC 4 cut(s) 201, 510, 767, 949
NlaIII CATG 2 cut(s) 110, 901
NlaIV GGNNCC 4 cut(s) 576, 747, 962, 994
NmeAIII GCCGAG 2 cut(s) 431, 559
NmuCI GTSAC 1 cut(s) 795
PagI TCATGA 1 cut(s) 106
PcsI WCGNNNNNNNCGW 2 cut(s) 976, 993
PfeI GAWTC 2 cut(s) 397, 782
PleI GAGTC 3 cut(s) 616, 648, 989
PpsI GAGTC 3 cut(s) 616, 648, 989
PspN4I GGNNCC 4 cut(s) 576, 747, 962, 994
PspPI GGNCC 2 cut(s) 547, 582
RsaI GTAC 2 cut(s) 468, 747
RsaNI GTAC 2 cut(s) 467, 746
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 2 cut(s) 329, 692
Sau3AI GATC 4 cut(s) 201, 510, 767, 949
Sau96I GGNCC 2 cut(s) 547, 582
SchI GAGTC 3 cut(s) 616, 648, 990
ScrFI CCNGG 1 cut(s) 551
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 4 cut(s) 183, 544, 669, 982
SsiI CCGC 2 cut(s) 612, 630
SspMI CTAG 4 cut(s) 77, 149, 521, 714
StyD4I CCNGG 1 cut(s) 549
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 670
TaqI TCGA 3 cut(s) 204, 336, 538
TfiI GAWTC 2 cut(s) 397, 782
Tru1I TTAA 2 cut(s) 329, 692
Tru9I TTAA 2 cut(s) 329, 692
TscAI CASTG 2 cut(s) 270, 804
TseFI GTSAC 1 cut(s) 795
Tsp45I GTSAC 1 cut(s) 795
TspDTI ATGAA 4 cut(s) 84, 95, 230, 315
TspGWI ACGGA 2 cut(s) 985, 1002
TspRI CASTG 2 cut(s) 270, 804
XapI RAATTY 2 cut(s) 71, 854
XbaI TCTAGA 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 4 cut(s) 77, 149, 521, 714
ZraI GACGTC 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.