Rw2G017140

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000339
Physical Location & Seq
Reverse (-)
21008502 .. 21009917
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017140.1

Sequence Viewer

Length: 1380 bp
ATGAGCTCCACCACTGATCCCAAGAAACTTCACATAGCCTTGTTCCCATGGCTAGCCTTTGGTCACATAATACCATTTCTTGAGGTTGCAAAGTGCATAGCTCGAAGAGGGCATAAGGTTTCCTTCATCTCCACCCCAAGAAACATCCAACGCCTCCCCAAAATTCCTACAAACTTAACCCCTTTGATCAATTTAGTCCAAGTCCCACTTCCACAGGTCGAAAACCTCCCAGAAAACGCAGAAGCTAGCATGGATGTCCCATACCACATTATCCCATACCTCAAGCTAGCACATGATGGACTTGAAGCTGGTATTTCTGAATTCCTAGAATCTCATACTCCAGATTGGATTATTCATGATTATTCCCCTCACTGGTTGCCACCAATAGCTACTAAGCTAGGCATATCACGAGCTTATTTCAGCACCCTCAACGCTGCCACTGTATGCTTCTTGGGGCCAACAGCACCTGATGTAAAAGATCGCTATGCTCCTCGAACACGGCCAGAAGATTTCACTGTCCCACTCGAGTGGGTTCCTTTTCGTAATTCCAAATTGGCTTTTAAGCCTTTCGAATGCAAGAAAATTTTCGAGGCTACTGTACAAAACCCTTCTGGCTTTTCGGATTCGTTACGCTTGGAGTTCACGACCAAAGATTGTGAACTCTATTTAGTTCGAAGTTGCAAAGAGATCGAGGCACCTTTAGTGCTTCCGGTGGGGTTGTTGCCACCAATAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGCTGGTCTATAATTGATGTCTGGTTGAACAAGCACGAGAAGGGGACTGCTGTCTATGTTGCGTTAGGAACTGAAGTGAATCCAAGTCAAGAAGACTTCACAGAATTGGCTCTGGGATTGGAACTTTCTGGGTTGCCTTTCTTTTGGGTATTGAGGAAATTACCAAGTGGTTCAGGGGATGGTAACTTGGAGTTCAAGCTACCAGATGGTTTTGAAGATCGAACCGAGGGACGGGGGCTTGTTTGGAGAACTTGGGCACCTCAGCCCAAAATCTTGGCTCACAAGTCTATTGGCGGTTTCTTGACTCACTGCGGTTGGAGTTCACTCATAGAGGGACTCTATTATGGACATCCTCTTATGATGTTTCCATTCTTATATGACCAAGGGCTAAATGCTAGGCTTTGGGACAAGAAGGTTGGAATTGAGGTACCAAGAGACGAACAGAGTGGATCGTTTACGAGGGATTCGGTGGCCAACTCACTGAAATTGGTTATGGTGGATAAGGATGGGAAGGCTTATAGGGATGGGGCTAAGGAATTTAGTGTAACATTCAGAGACAGAGAGCTTCAAGAAAGATACATGGACACATGCTTAGACTATTTAGAAAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

459

Amino Acids

52.03

Weight (kDa)

5.77

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 264 - 443 1e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1192
AccB1I GGYRCC 3 cut(s) 694, 1021, 1192
AciI CCGC 2 cut(s) 1059, 1077
AclWI GGATC 2 cut(s) 11, 1222
AcoI YGGCCR 2 cut(s) 500, 1236
AcsI RAATTY 4 cut(s) 162, 320, 582, 1301
AcuI CTGAAG 1 cut(s) 858
AfaI GTAC 2 cut(s) 600, 1194
AfiI CCNNNNNNNGG 2 cut(s) 372, 996
AgsI TTSAA 5 cut(s) 305, 793, 961, 980, 1334
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AleI CACNNNNGTG 1 cut(s) 526
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 1194, 1314
AlwI GGATC 2 cut(s) 11, 1222
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 3 cut(s) 455, 500, 1236
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 4 cut(s) 162, 320, 582, 1301
Asp700I GAANNNNTTC 1 cut(s) 584
Asp718I GGTACC 1 cut(s) 1192
AspS9I GGNCC 1 cut(s) 455
AsuII TTCGAA 2 cut(s) 570, 673
AsuNHI GCTAGC 3 cut(s) 52, 245, 286
AvaI CYCGRG 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 1024
BalI TGGCCA 1 cut(s) 1238
BanI GGYRCC 3 cut(s) 694, 1021, 1192
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 2 cut(s) 408, 800
BbsI GAAGAC 2 cut(s) 756, 864
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 1026
BbvI GCAGC 1 cut(s) 421
BccI CCATC 5 cut(s) 290, 938, 965, 1265, 1283
BceAI ACGGC 1 cut(s) 515
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 1194, 1314
BfaI CTAG 7 cut(s) 53, 246, 287, 326, 398, 1161, 1378
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 5 cut(s) 456, 534, 696, 1023, 1194
BmtI GCTAGC 3 cut(s) 56, 249, 290
BoxI GACNNNNGTC 1 cut(s) 815
BpiI GAAGAC 2 cut(s) 756, 864
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 2 cut(s) 1026, 1296
Bpu14I TTCGAA 2 cut(s) 570, 673
BpuEI CTTGAG 2 cut(s) 101, 266
BsaJI CCNNGG 3 cut(s) 47, 990, 1147
BsaWI WCCGGW 1 cut(s) 709
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 996
Bse1I ACTGG 1 cut(s) 377
BseDI CCNNGG 3 cut(s) 47, 990, 1147
BseGI GGATG 6 cut(s) 144, 259, 949, 1114, 1276, 1294
BseLI CCNNNNNNNGG 2 cut(s) 372, 996
BseMII CTCAG 1 cut(s) 1040
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 1 cut(s) 421
BshFI GGCC 3 cut(s) 457, 502, 1238
BshNI GGYRCC 3 cut(s) 694, 1021, 1192
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 1 cut(s) 710
BslFI GGGAC 7 cut(s) 188, 242, 503, 823, 1008, 1113, 1184
BslI CCNNNNNNNGG 2 cut(s) 372, 996
BsmAI GTCTC 2 cut(s) 1194, 1314
BsmBI CGTCTC 1 cut(s) 1194
BsmFI GGGAC 7 cut(s) 188, 242, 503, 823, 1008, 1113, 1184
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 3 cut(s) 457, 502, 1238
BsoBI CYCGRG 1 cut(s) 524
Bsp119I TTCGAA 2 cut(s) 570, 673
Bsp1286I GDGCHC 2 cut(s) 8, 1024
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 1059, 1077
BspANI GGCC 3 cut(s) 457, 502, 1238
BspCNI CTCAG 1 cut(s) 1039
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 5 cut(s) 456, 534, 696, 1023, 1194
BspOI GCTAGC 3 cut(s) 56, 249, 290
BspPI GGATC 2 cut(s) 11, 1222
BspT104I TTCGAA 2 cut(s) 570, 673
BspT107I GGYRCC 3 cut(s) 694, 1021, 1192
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 47, 990, 1147
BssMI GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
BssSI CACGAG 2 cut(s) 408, 800
BssT1I CCWWGG 2 cut(s) 47, 1147
Bst2BI CACGAG 2 cut(s) 408, 800
Bst4CI ACNGT 3 cut(s) 442, 517, 598
Bst6I CTCTTC 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 598
BstBI TTCGAA 2 cut(s) 570, 673
BstC8I GCNNGC 3 cut(s) 54, 247, 288
BstDEI CTNAG 4 cut(s) 393, 1026, 1296, 1357
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 6 cut(s) 144, 259, 949, 1114, 1276, 1294
BstKTI GATC 6 cut(s) 19, 189, 481, 690, 985, 1217
BstMAI GTCTC 2 cut(s) 1194, 1314
BstMBI GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
BstNSI RCATGY 1 cut(s) 1356
BstPAI GACNNNNGTC 1 cut(s) 815
BstSLI GKGCMC 1 cut(s) 1024
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 2 cut(s) 756, 864
BstXI CCANNNNNNTGG 2 cut(s) 528, 1039
BsuRI GGCC 3 cut(s) 457, 502, 1238
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 6 cut(s) 144, 259, 949, 1114, 1276, 1294
BtsI GCAGTG 1 cut(s) 1072
BtsIMutI CAGTG 6 cut(s) 12, 370, 438, 513, 1072, 1244
Cac8I GCNNGC 3 cut(s) 54, 247, 288
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 599, 1193
CviAII CATG 6 cut(s) 48, 250, 293, 356, 1345, 1353
CviQI GTAC 2 cut(s) 599, 1193
DdeI CTNAG 4 cut(s) 393, 1026, 1296, 1357
DpnI GATC 6 cut(s) 18, 188, 480, 689, 984, 1216
DpnII GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
EaeI YGGCCR 2 cut(s) 500, 1236
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 47, 1147
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 47, 1147
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 47, 1147
Esp3I CGTCTC 1 cut(s) 1194
FaeI CATG 6 cut(s) 51, 253, 296, 359, 1348, 1356
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 192, 224
FaqI GGGAC 7 cut(s) 188, 242, 503, 823, 1008, 1113, 1184
FatI CATG 6 cut(s) 47, 249, 292, 355, 1344, 1352
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 6 cut(s) 131, 266, 956, 1101, 1283, 1301
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 7 cut(s) 53, 246, 287, 326, 398, 1161, 1378
GluI GCNGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 3 cut(s) 457, 502, 1238
HapII CCGG 1 cut(s) 710
Hin1II CATG 6 cut(s) 51, 253, 296, 359, 1348, 1356
HinfI GANTC 6 cut(s) 329, 623, 844, 1069, 1101, 1229
HpaII CCGG 1 cut(s) 710
Hpy166II GTNNAC 4 cut(s) 642, 659, 1088, 1221
Hpy188I TCNGA 4 cut(s) 319, 622, 745, 1319
Hpy188III TCNNGA 8 cut(s) 80, 341, 356, 408, 643, 854, 1066, 1334
Hpy8I GTNNAC 4 cut(s) 642, 659, 1088, 1221
HpyAV CCTTC 5 cut(s) 133, 618, 799, 1171, 1270
HpyCH4III ACNGT 3 cut(s) 442, 517, 598
HpyCH4V TGCA 4 cut(s) 89, 96, 576, 681
HpyF3I CTNAG 4 cut(s) 393, 1026, 1296, 1357
Hsp92II CATG 6 cut(s) 51, 253, 296, 359, 1348, 1356
KpnI GGTACC 1 cut(s) 1196
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
LmnI GCTCC 2 cut(s) 11, 493
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 7 cut(s) 53, 246, 287, 326, 398, 1161, 1378
MaeIII GTNAC 4 cut(s) 62, 627, 947, 1309
MalI GATC 6 cut(s) 18, 188, 480, 689, 984, 1216
MboI GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
MboII GAAGA 5 cut(s) 117, 518, 761, 869, 992
MhlI GDGCHC 2 cut(s) 8, 1024
MlsI TGGCCA 1 cut(s) 1238
MluNI TGGCCA 1 cut(s) 1238
MlyI GAGTC 2 cut(s) 1063, 1095
MmeI TCCRAC 3 cut(s) 172, 1061, 1162
Mox20I TGGCCA 1 cut(s) 1238
MroXI GAANNNNTTC 1 cut(s) 584
MscI TGGCCA 1 cut(s) 1238
MseI TTAA 2 cut(s) 176, 561
MslI CAYNNNNRTG 1 cut(s) 526
Msp20I TGGCCA 1 cut(s) 1238
MspI CCGG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 578
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
NheI GCTAGC 3 cut(s) 52, 245, 286
NlaIII CATG 6 cut(s) 51, 253, 296, 359, 1348, 1356
NlaIV GGNNCC 5 cut(s) 456, 534, 696, 1023, 1194
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 1356
NspV TTCGAA 2 cut(s) 570, 673
OliI CACNNNNGTG 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 524
PagI TCATGA 1 cut(s) 355
PctI GAATGC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 329, 623, 844, 1229
PkrI GCNGC 1 cut(s) 436
PleI GAGTC 2 cut(s) 1063, 1095
PpsI GAGTC 2 cut(s) 1063, 1095
PshAI GACNNNNGTC 1 cut(s) 815
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 5 cut(s) 456, 534, 696, 1023, 1194
PspPI GGNCC 1 cut(s) 455
PspXI VCTCGAGB 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 600, 1194
RsaNI GTAC 2 cut(s) 599, 1193
RseI CAYNNNNRTG 1 cut(s) 526
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 176, 561
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 6 cut(s) 16, 186, 478, 687, 982, 1214
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 2 cut(s) 1063, 1095
SduI GDGCHC 2 cut(s) 8, 1024
Sfr274I CTCGAG 1 cut(s) 524
SfuI TTCGAA 2 cut(s) 570, 673
SlaI CTCGAG 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 526
SmlI CTYRAG 3 cut(s) 80, 281, 524
SmoI CTYRAG 3 cut(s) 80, 281, 524
SsiI CCGC 2 cut(s) 1059, 1077
SspMI CTAG 7 cut(s) 53, 246, 287, 326, 398, 1161, 1378
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 2 cut(s) 47, 1147
TaaI ACNGT 3 cut(s) 442, 517, 598
TaqI TCGA 9 cut(s) 103, 219, 493, 525, 570, 588, 673, 690, 985
TatI WGTACW 1 cut(s) 598
TfiI GAWTC 4 cut(s) 329, 623, 844, 1229
Tru1I TTAA 2 cut(s) 176, 561
Tru9I TTAA 2 cut(s) 176, 561
TscAI CASTG 6 cut(s) 19, 377, 445, 520, 1079, 1251
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 115, 344, 762
TspRI CASTG 6 cut(s) 19, 377, 445, 520, 1079, 1251
XapI RAATTY 4 cut(s) 162, 320, 582, 1301
XceI RCATGY 1 cut(s) 1356
XhoI CTCGAG 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 7 cut(s) 53, 246, 287, 326, 398, 1161, 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.