Rroxscaffold_2G00132850

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000339
Physical Location & Seq
Forward (+)
69892343 .. 69893365
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132850.1

Sequence Viewer

Length: 1023 bp
ATGTGCGCGGCCAAACCACCCCAACTCATCACCATGAGCTCCACCACTGATCCCAAGAAACTTCACATAGCCTTGTTCCCATGGCTAGCCTTTGGTCACATAATACCATTTCTTGAGGTTGCAAAGTGCATAGCTCGAAGAGGGCATAAGGTTTCCTTCATCTCCACCCCAAGAAACATCCAACGCCTCCCCAAAATTCTTACAAACTTAACCCCTTTGATCAATTTAGTCCAAGTCCCACTTCCACAGGTCGAAAACCTCCCAGAAAACGCAGAAGCCAGCATGGATGTCCCATACCACATTATCCCATACCTCAAGCTAGCACATGATGGACTTGAAGCTGGTATTTCTGAATTCCTAGAATCTCATACTCCAGATTGGATTATTCATGATTATTCCCCTCACTGGTTGCCACCAATAGCTACTAAGCTAGGCATATCACGAGCCTATTTCAGCACCCTCAACGCTGCCACTGTATGCTTCTTGGGGCCAACAGCACCTGATGTAAAAGATCGCTATGCTCCTCGAACACGGCCAGAAGATTTCACTGTCCCACCCGAGTGGGTTCCTTTTCGTAATTCCAAATTGGCTTTTAAGCCTTTCGAATCCAAGAAAATTTTCGAGGCTACTGTACAATACCCTTCTGGCTTTTCGGATTCGTTACGCTTGGAGTTCACGACCAAAGATTGTGAACTCTATTTAGTTCGAAGTTGCAAAGAGATCGAGGGTGAGTGGCTGGATTTAGCTCAGGATATTCTTCCAGCACCTTTAGTGCTTCCGGTGGGGTTGTTGCCGCCAGTAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGCTGGTCTATAATTGATGACTGGTTGAACAAGCAAGAGAAGGGGACTGCTGTCTATGTTGCGTTAGGAACTGAGGTGAATCCAAGTCAAGAGGACTTCACAGAATTGGCTCTGGGATTGAAACTTTCTGGGTTGCCTTTCTTTTGGGTATTGATCGAGGAAATTACCAAGTGGTTCAGGGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

340

Amino Acids

38.49

Weight (kDa)

5.36

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22590
fragaria_vesca FvH4_1g12660 FvH4_1g19380 FvH4_1g19390 FvH4_1g19400 FvH4_1g19402 FvH4_1g19420 FvH4_1g19450 FvH4_1g19460 FvH4_1g19464 FvH4_1g19480
malus_domestica MD01G1041000.v1.1 MD15G1310300.v1.1
prunus_persica Prupe.6G203500_v2.0.a1 Prupe.6G203700_v2.0.a1 Prupe.6G203800_v2.0.a1 Prupe.6G203900_v2.0.a1 Prupe.6G204000_v2.0.a1
pyrus_communis pycom01g06860
rosa_chinensis RchiOBHm_Chr2g0110741 RchiOBHm_Chr2g0110761 RchiOBHm_Chr2g0110781 RchiOBHm_Chr2g0110791 RchiOBHm_Chr2g0110831 RchiOBHm_Chr2g0110841 RchiOBHm_Chr2g0110861 RchiOBHm_Chr2g0110881 RchiOBHm_Chr2g0110901 RchiOBHm_Chr2g0110931 RchiOBHm_Chr2g0111531
rosa_laevigata RLG00000017837 RLG00000017838 RLG00000017839 RLG00000017840 RLG00000017842 RLG00000017843 RLG00000017844 RLG00000017845 RLG00000017846 RLG00000017848 RLG00000017850 RLG00000017854 RLG00000017897
rosa_multiflora Rmu_co8508665.1_g000001 Rmu_sc0003291.1_g000004 Rmu_sc0003291.1_g000015 Rmu_sc0003291.1_g000016 Rmu_sc0003291.1_g000023 Rmu_sc0003291.1_g000029 Rmu_sc0003291.1_g000032 Rmu_sc0003994.1_g000017 Rmu_sc0003994.1_g000019
rosa_roxburghii Rroxscaffold_2G00132240 Rroxscaffold_2G00132800 Rroxscaffold_2G00132810 Rroxscaffold_2G00132830 Rroxscaffold_2G00132850 Rroxscaffold_2G00132900 Rroxscaffold_2G00132930 Rroxscaffold_2G00132940 Rroxscaffold_2G00132950 Rroxscaffold_2G00132970
rosa_rugosa Rorug02G0169400.1 Rorug02G0169500 Rorug02G0169500 Rorug02G0169500 Rorug02G0169600 Rorug02G0169700 Rorug02G0169800 Rorug02G0169900 Rorug02G0170000 Rorug02G0170100 Rorug02G0170200 Rorug02G0174900
rosa_samantha Rh2BG231600 Rh2BG231800 Rh2BG232100 Rh2BG232400 Rh2BG232600 Rh2BG232800 Rh2BG233200 Rh2BG233400 Rh2BG233700 Rh2BG239500 Rh2CG224000 Rh2CG224300 Rh2CG224400 Rh2CG224700 Rh2CG224800 Rh2CG225000 Rh2CG225200 Rh2CG225300 Rh2DG227900 Rh2DG228000 Rh2DG228100 Rh2DG228800 Rh2DG228900 Rh2DG229200 Rh2DG229400 Rh2DG229600 Rh2DG229800 Rh2DG229900 Rh2DG230200
rosa_wichuraiana Rw2G017100 Rw2G017110 Rw2G017130 Rw2G017140 Rw2G017150 Rw2G017170 Rw2G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AciI CCGC 2 cut(s) 8, 794
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 2 cut(s) 9, 533
AcsI RAATTY 3 cut(s) 195, 353, 615
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 1 cut(s) 405
AgsI TTSAA 3 cut(s) 338, 862, 955
AjuI GAANNNNNNNTTGG 4 cut(s) 225, 257, 602, 634
AleI CACNNNNGTG 1 cut(s) 559
AluBI AGCT 8 cut(s) 39, 134, 319, 341, 422, 430, 746, 837
AluI AGCT 8 cut(s) 39, 134, 319, 341, 422, 430, 746, 837
Alw21I GWGCWC 1 cut(s) 41
AlwI GGATC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 3 cut(s) 9, 488, 533
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 3 cut(s) 195, 353, 615
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 22, 740, 922
AsuII TTCGAA 2 cut(s) 603, 706
AsuNHI GCTAGC 2 cut(s) 85, 319
AvaI CYCGRG 1 cut(s) 557
BanII GRGCYC 1 cut(s) 41
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 454
BccI CCATC 2 cut(s) 323, 1011
BceAI ACGGC 1 cut(s) 548
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BclI TGATCA 1 cut(s) 219
BfaI CTAG 4 cut(s) 86, 320, 359, 431
BisI GCNGC 3 cut(s) 9, 468, 794
BlsI GCNGC 3 cut(s) 10, 469, 795
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 489, 567
BmtI GCTAGC 2 cut(s) 89, 323
BoxI GACNNNNGTC 1 cut(s) 884
BpiI GAAGAC 1 cut(s) 825
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 747
Bpu14I TTCGAA 2 cut(s) 603, 706
BpuEI CTTGAG 2 cut(s) 134, 299
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 778
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 410, 797, 860
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 3 cut(s) 177, 292, 1022
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 761, 897
BseNI ACTGG 3 cut(s) 410, 797, 860
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 3 cut(s) 11, 490, 535
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 4 cut(s) 221, 275, 536, 892
BslI CCNNNNNNNGG 1 cut(s) 405
BsmFI GGGAC 4 cut(s) 221, 275, 536, 892
BsnI GGCC 3 cut(s) 11, 490, 535
BsoBI CYCGRG 1 cut(s) 557
Bsp119I TTCGAA 2 cut(s) 603, 706
Bsp1286I GDGCHC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 631
Bsp143I GATC 5 cut(s) 49, 219, 511, 720, 987
Bsp19I CCATGG 1 cut(s) 80
BspACI CCGC 2 cut(s) 8, 794
BspANI GGCC 3 cut(s) 11, 490, 535
BspCNI CTCAG 2 cut(s) 760, 898
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 489, 567
BspOI GCTAGC 2 cut(s) 89, 323
BspPI GGATC 1 cut(s) 44
BspT104I TTCGAA 2 cut(s) 603, 706
BsrGI TGTACA 1 cut(s) 631
BsrI ACTGG 3 cut(s) 410, 797, 860
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 5 cut(s) 49, 219, 511, 720, 987
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 475, 550, 631
Bst6I CTCTTC 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 631
BstBI TTCGAA 2 cut(s) 603, 706
BstC8I GCNNGC 3 cut(s) 87, 280, 321
BstDEI CTNAG 3 cut(s) 426, 747, 906
BstDSI CCRYGG 1 cut(s) 80
BstF5I GGATG 3 cut(s) 177, 292, 1022
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 5 cut(s) 52, 222, 514, 723, 990
BstMBI GATC 5 cut(s) 49, 219, 511, 720, 987
BstPAI GACNNNNGTC 1 cut(s) 884
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 825
BstXI CCANNNNNNTGG 1 cut(s) 561
BsuRI GGCC 3 cut(s) 11, 490, 535
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 3 cut(s) 177, 292, 1022
BtsIMutI CAGTG 4 cut(s) 45, 403, 471, 546
Cac8I GCNNGC 3 cut(s) 87, 280, 321
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 632
CviAII CATG 5 cut(s) 34, 81, 283, 326, 389
CviQI GTAC 1 cut(s) 632
DdeI CTNAG 3 cut(s) 426, 747, 906
DpnI GATC 5 cut(s) 51, 221, 513, 722, 989
DpnII GATC 5 cut(s) 49, 219, 511, 720, 987
EaeI YGGCCR 2 cut(s) 9, 533
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 557
EcoICRI GAGCTC 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 5 cut(s) 37, 84, 286, 329, 392
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 225, 257
FaqI GGGAC 4 cut(s) 221, 275, 536, 892
FatI CATG 5 cut(s) 33, 80, 282, 325, 388
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 9, 468, 794
FokI GGATG 2 cut(s) 164, 299
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 9, 468, 794
FspBI CTAG 4 cut(s) 86, 320, 359, 431
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 9, 468, 794
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 3 cut(s) 11, 490, 535
HapII CCGG 1 cut(s) 779
HhaI GCGC 1 cut(s) 8
Hin1II CATG 5 cut(s) 37, 84, 286, 329, 392
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 4 cut(s) 362, 605, 656, 913
HpaII CCGG 1 cut(s) 779
HphI GGTGA 3 cut(s) 22, 740, 922
Hpy166II GTNNAC 2 cut(s) 675, 692
Hpy188I TCNGA 3 cut(s) 352, 655, 814
Hpy188III TCNNGA 7 cut(s) 113, 374, 389, 441, 676, 749, 923
Hpy8I GTNNAC 2 cut(s) 675, 692
HpyAV CCTTC 3 cut(s) 166, 651, 868
HpyCH4III ACNGT 3 cut(s) 475, 550, 631
HpyCH4V TGCA 3 cut(s) 122, 129, 714
HpyF3I CTNAG 3 cut(s) 426, 747, 906
Hsp92II CATG 5 cut(s) 37, 84, 286, 329, 392
HspAI GCGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 5 cut(s) 49, 219, 511, 720, 987
LmnI GCTCC 2 cut(s) 44, 526
Lsp1109I GCAGC 1 cut(s) 454
MaeI CTAG 4 cut(s) 86, 320, 359, 431
MaeIII GTNAC 2 cut(s) 95, 660
MalI GATC 5 cut(s) 51, 221, 513, 722, 989
MboI GATC 5 cut(s) 49, 219, 511, 720, 987
MboII GAAGA 4 cut(s) 150, 551, 749, 830
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 9 cut(s) 195, 223, 353, 577, 584, 615, 846, 938, 996
MmeI TCCRAC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 2 cut(s) 209, 594
MslI CAYNNNNRTG 2 cut(s) 32, 559
MspI CCGG 1 cut(s) 779
MvnI CGCG 1 cut(s) 8
NcoI CCATGG 1 cut(s) 80
NdeII GATC 5 cut(s) 49, 219, 511, 720, 987
NheI GCTAGC 2 cut(s) 85, 319
NlaIII CATG 5 cut(s) 37, 84, 286, 329, 392
NlaIV GGNNCC 2 cut(s) 489, 567
NmuCI GTSAC 1 cut(s) 95
NspV TTCGAA 2 cut(s) 603, 706
OliI CACNNNNGTG 1 cut(s) 559
PagI TCATGA 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 4 cut(s) 362, 605, 656, 913
PkrI GCNGC 3 cut(s) 10, 469, 795
PshAI GACNNNNGTC 1 cut(s) 884
Psp124BI GAGCTC 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 489, 567
PspPI GGNCC 1 cut(s) 488
PstNI CAGNNNCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
RseI CAYNNNNRTG 2 cut(s) 32, 559
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 209, 594
SatI GCNGC 3 cut(s) 9, 468, 794
Sau3AI GATC 5 cut(s) 49, 219, 511, 720, 987
Sau96I GGNCC 1 cut(s) 488
SduI GDGCHC 1 cut(s) 41
SfuI TTCGAA 2 cut(s) 603, 706
SmiMI CAYNNNNRTG 2 cut(s) 32, 559
SmlI CTYRAG 2 cut(s) 113, 314
SmoI CTYRAG 2 cut(s) 113, 314
Sse9I AATT 9 cut(s) 195, 223, 353, 577, 584, 615, 846, 938, 996
SsiI CCGC 2 cut(s) 8, 794
SspMI CTAG 4 cut(s) 86, 320, 359, 431
SstI GAGCTC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 3 cut(s) 475, 550, 631
TaqI TCGA 8 cut(s) 136, 252, 526, 603, 621, 706, 723, 990
TasI AATT 9 cut(s) 195, 223, 353, 577, 584, 615, 846, 938, 996
TatI WGTACW 1 cut(s) 631
TauI GCSGC 2 cut(s) 11, 796
TfiI GAWTC 4 cut(s) 362, 605, 656, 913
Tru1I TTAA 2 cut(s) 209, 594
Tru9I TTAA 2 cut(s) 209, 594
TscAI CASTG 4 cut(s) 52, 410, 478, 553
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 148, 377, 831
TspRI CASTG 4 cut(s) 52, 410, 478, 553
XapI RAATTY 3 cut(s) 195, 353, 615
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 4 cut(s) 86, 320, 359, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.